Pseudoliparis swirei (Mariana hadal snailfish): 130196186
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Entry
130196186 CDS
T09868
Name
(RefSeq) dmX-like protein 1 isoform X1
KO
K24155
rabconnectin-3a
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
130196186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130196186
Membrane trafficking [BR:
pswi04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
130196186
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
130196186
RAVE complex
130196186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR5
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
EIF3I
PEP5_VPS11_N
WD40_Gbeta
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_CAF1B_HIR1
NBCH_WD40
Beta-prop_VPS8
Beta-prop_WDR19_2nd
Beta-prop_DCAF12
SSTK-IP
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
130196186
NCBI-ProteinID:
XP_056274050
LinkDB
All DBs
Position
7:25545201..25599870
Genome browser
AA seq
3094 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFSVGSVNNVPFTAYASGCDVVILGSDFERLQIIPGAKHGNIQV
CCVDCSLQGGQIAASYGSIVCVFEPVQHPDQKDTSLTKLNCQWQKTGQFVLKSMVRNLAW
HPTGCTLLTGSSSLQLWSNVAGEEDEAEEVGTQTGMTIGETHSAWRCIWQSKMASQVSLM
KFSPDGEFFATAGQDDCLVKVWYNTSKWKLGVSRLFTPPEPSECFQGELAFSFVYLAHPR
SVTGFSWRKTSKYMPRGAVCNVLLTCCKDSVCRLWAETLLPGDGLLSGYHNNHASSQHGD
TPGCAGPPGTTCNGKLRGRTAQELNFQRYLRGSFHRDVPQPSLTCGLPHHQSRHYSHKRS
GSNRPHANALCHFHIAASINPATDIPLLPSISSLSSVDDEEPGGLFTVHWLNNKELHFTL
AMDVFLQQLRGSLEQQDDGANEVPEDDSDEDNSSRPSDSQATEAAELPLAAVKHQVDVLL
EEWNKGADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQAQVSFVSRIPVAFPTGDAISLS
HSVVMYACNKNVDLAIQHGRKRPPGSALPQTKSALISYGGQGKAAPSSSLRFSIFTPSVL
MISKHADGSLNQWAVGFAEDSAFSTVLSVSHKSRYCGHRFHLNDLACHSLLPLLLTTSHH
NALRTPEADSLLAPADAYSSGFSRPAFLPRGLRSSRASLGAVSQDPNAIYSELILWRVDP
VGPLSLSGGVSELARINSLHASAFAQVAWLPTFIPSSCLGVYCNSPSACFVASDGHSLRM
YQAVIEAKKLLSELSNPEISKYVGEVFNIISQQSTAKPGCIIELDTITDFQGKETQLLHV
FEEDLILGSERRESPQQTPDAPHTASSKVAFSARFFLVVVELTPSGRSLLHMWHLHLAAR
PIIMEETTMEANVTSASPLNSSTFSYDEFTSPVGQKSKPCTSNLQSACRLSLTTHRLYSQ
EMALPEGVEAISVTPSAGHLSASCSLPADRVPYLLATSCSDGKVRFWRCVVIATEPSGVD
RLVYQWEEWPLLVEARLPNSSAVEVQGRPIEVSCCHSGRIAVAYKRIPTTSLISTPYLNS
LQLLTSPPTLSSSPYMHNNNNNNTRLTPTLTVQHSPNLSLSPNAANSQEPLVHIGIFQCE
STGGSQWHLEQTLVLDSTDLPVHEDCPGSTSKNLVHLDWVSQEDGSHVLTVGIGTKIYMY
GRLAGKPPELGLTSDASRDQSSSRLVLIQSVDLVSSVEGSLPIPVSLSWVRDGILVVGMD
CEMHVYSQWQPPAPIKPNSPIAQDTDISSSVSSIISAIRQCQEDGPGSGAPVSSLAPPKK
SLTRSMMSLAQKLSGKRTAYDLPVEMEDSGLFEAAHQLFPTLPQYHPVQLLELMDLGKVH
RAKAILSHLVKCIAGEVVALKDSTTNPEKRVRSRTISAGGSAARDRKMFSKAENATPDYT
EISSIPPLPLYALLAADEDTLPKPDKVISVSGDSGHGSIHTDVYEELFHTPTVADLDPLE
DDQEETGNKVIDLSQYSPTQFGPEHAQVLSSHLLHSSLPGLTRMEQMSLMALADTIATSS
TDLKDSQSTSKGGETLDECGLKFLLAVQLHTFLSTSLPPAHRAQLLRQGLSTCHYAWAFH
SEAEEELLNMLPSLHKGEPTWPELRSMGVGWWLRSSNKLRRCIEKVAKTALQRNNDPLDA
AIFYLALKKKAVVWGLYRSQKNAKMTEFFRNNFSEDRWRKAALKNAFSLLGKQRFQHSAA
FFLLAGSLKDAVEVCIEKLQDLQLALVISRLYESEFETASTYKKILQRHVLGQDKQIQAH
QDPFLRSMAHWVLEDYSGALDTLLEQPATGFSSGCTESKCDAGSSSVSTCNPEVFNFYTY
LRTHPLLLRRHFGSSDKAKVGLTAEGRRPDSISLEERRLFFTAAYAHLQAGCPMLALEVL
SKMPKVRKHSELPNQAADLSVGSVNGQTSNPDWSQTTLNGYESDGHSLSNSHSDSVLSFD
WSHQSPAHTDEPLELRWDSDKDGEDEEEDEEGEATNVDGSSVFQDTRDATSPLMETDTGE
DSENCHDFIAPCHDILAAQLKFTACLKIMTNELRTLSNGYELDGGKLRCQLYQWLEREVV
ALQRCCSYKPCLPELSVQGDAPDSGLVEEEQPGSPPGHRQRSRRHWLQSNQPLLRMFLSY
CSLHGSHGGGLASVRMELILLLQESHQDDSTQPAVTPCCQPTSIPLLMACTSNVKTVVAN
PIVYLTNLAQDILRTINSLDSPPHPDVVNNEIYVLHTLAASLSACIYQCLCDGHTHSHVN
HFTGIVYQSVLLSQKPPLRTVSMDESVQPNTSPAQWPGIASLIRLLSSAGEESQPGLTVL
LCEILTAVFLSLFVHGLATHSSNELFRIVAHPLDSKLWVAVFGGGARTPVIDKLNSPSRT
PPPASPSSSDRKSRRFRLLTPRSGSKDDAGNERESPSSAKHGPVVEQEAASIFKERFVPP
ELSIWDYFIAKPSLPPSEDRIEYDSEESQDSQDKEEEDDYEYEDVFDPSSPQREHSNHNS
YSWCLMRLSMVQLVLVNLKSFYPMAGYDLLDLPVVSPLCHAVLKTLQRWEQVLQKRLEIF
GGPPSKYISTLLKDETAAPGPALLRHKALFEPSNTPFRTSHHSALPVKRLWQFLVKQEEV
QETFIRNIFTKKRDPNESGEDQTDDMKCSGMEERGNNQTEADLGFPGGKARIIHKESDII
TAFAINKANRNCLVMASTHDIQELDVSSILATQILTWIDDEDAEVKGVGGDDFLVVHARD
DFAALHGTTPYTHSSPGTPINMPWLGGVQTGRGAAVVSARPGLMIKRNINNVRRMTSHPT
LPYYLTGAQDGSVRMFEWGHSQQIICFRSPGNSRVTRIRFNHQGNKFGIVDADGGLSLWQ
TNTSGIAPKPYLTLQCHNKTAHDFVFVGSSSLIATAGLSTDNRNVCLWDTLVTPANSLVH
AFCCHESGATVLLMASRQQLLIIGGRKGWISILELAHRHQRQSFQAHDSSVKALAVDPTE
DCFISGSAEGNIKIWSLATMTALYAFPNEHARQSLFRNLGTGVMQIEVGPTNHIFSCGAD
GTMKMRVLPDRFGVVHNNNNNNHGDLKNDVKLII
NT seq
9285 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccatcaggtccttacaggagctgtcaaccctggagacaattgtttctctgta
gggagcgtcaacaatgtgccattcacggcctatgcgtcaggatgcgacgtggtgattttg
ggcagtgactttgagcgactgcagatcatcccgggggccaagcatggcaacatccaggtc
tgctgcgtcgactgctccctgcagggcggacagattgcagcttcctatggaagcatcgtg
tgcgtctttgagccggttcagcatccagatcaaaaagacacttcactgactaagttgaat
tgccaatggcagaagaccggtcaatttgtattaaagtctatggtacggaaccttgcctgg
caccccacaggctgtacgcttctcacgggctctagtagcctccagctttggtccaatgta
gctggagaggaagatgaagctgaggaagtgggaacgcagacggggatgaccatcggagag
actcattccgcctggaggtgcatctggcagagcaagatggcatctcaagtcagtttaatg
aagttctctcctgacggggaattctttgctacggctggtcaggacgactgcctggtgaag
gtctggtacaacaccagtaagtggaagttgggtgtttccagactcttcacgcctccagag
cccagtgaatgcttccagggagagctggccttctcctttgtgtacctggcacatccccgt
tctgttaccggcttctcatggaggaagaccagcaagtacatgccacgcggcgcggtgtgc
aacgttctgctcacctgctgtaaggacagcgtgtgtcggctctgggcggagacgctcttg
ccgggcgacggcctcctgtctggttaccataacaaccatgcttcgagccaacacggtgac
acaccgggatgtgccggccctcctggcaccacctgcaatgggaaattacgaggaagaaca
gcacaagaattgaactttcaaagatacctgcgtggctcttttcaccgggacgtcccgcag
ccctccttgacttgcggcctgcctcaccatcagagccggcactacagccacaagaggagc
ggcagcaaccggccgcacgccaacgcgctctgccacttccacatcgctgccagcatcaac
cctgccacagacattcctctgctgccctccatctcctctctgagctccgtggacgacgag
gagcccggaggtctgttcactgtccactggctcaacaacaaagagctccatttcacttta
gcgatggacgtcttcttgcagcagctccgaggcagcctggagcagcaggacgacggcgcc
aatgaagtgcctgaggatgactctgatgaagataatagcagcagaccaagcgactcccag
gctactgaggctgcagagctccctctggcagcagtgaagcaccaggtggacgtgctgcta
gaagagtggaacaaaggagcagacatgctgttcagtatccatcccatggacggctctctg
ctggtctggcatgtcgactggttggatgaataccagccgggcatgttcagacaagctcag
gtgtccttcgtgtcccgtatccctgtggcgttccccacaggcgacgccatctccttgagc
cacagtgtggtgatgtatgcctgcaacaagaacgtggatctggccatccaacatggcagg
aagcggccacctgggagcgctttgcctcaaaccaagtctgctctcataagctacggaggt
caagggaaagctgcgcccagcagcagtctcagattcagcatcttcacccccagcgtcctc
atgatttccaaacacgccgatggctctctgaaccagtgggccgtcggcttcgcggaggac
tctgctttctctaccgtgctcagcgtgtctcacaagtcgaggtactgcggccaccgcttc
cacctcaacgacctggcctgtcactcgttgctgccgctgctcctcaccacctcgcaccac
aacgccttgaggacgccggaggccgacagcctcctggcccctgcggacgcctactcttct
ggtttctctcgtccggcgtttctgccccgggggttgcggtccagccgggcgtccctgggc
gcggtgtcccaggatcccaacgcgatctacagtgaactgattctatggcgagtggacccc
gtcggcccgctgtctttgtccggcggggtctccgagctcgctcggatcaattcccttcat
gcgtcagcgtttgctcaagtagcctggctgcccacattcattcccagcagctgtttaggt
gtgtactgtaactctcccagcgcctgcttcgtggcaagcgacggccactcgctccggatg
tatcaggctgttattgaagctaagaaactcctgagtgagctctccaatccagagatatca
aaatatgttggagaggtgtttaacatcatcagtcagcaatctacagcaaaaccaggatgt
attatagagctcgataccattactgactttcaggggaaggagacgcagctcctgcatgtt
tttgaagaggatctgatcctcggcagtgagagaagagagagcccgcagcaaacacctgat
gcccctcacactgcctctagcaaggtggcgttctctgcgcgttttttcctcgttgtggtc
gaattgaccccatcgggtcgctcgctcctccacatgtggcatctccatctcgctgctcga
cccatcatcatggaagagaccacgatggaggcgaacgtgacctcagcttctcctctgaac
agctctacgttcagctatgacgagttcacttctccagtgggtcagaagagtaaaccctgc
acttccaacctgcaaagtgcctgtcgcctcagcctcacaacacaccggctgtacagccaa
gagatggctctccctgaaggggtggaagccatcagtgtcacgccatcagcaggtcacttg
agcgcgtcatgttctctgccggctgatcgcgtgccctacctccttgctacttcctgttcc
gatggaaaggtgcgcttctggaggtgcgttgttattgcgacggagccttccggtgtggac
cgcttggtttaccagtgggaggagtggcctctgctggtggaggcgagacttcccaacagc
agcgcagtggaggtgcaaggtcgtcccatcgaggtcagctgctgccactccggacggatt
gcagttgcctacaagcggataccaaccacaagtctgatctcaacaccgtatctgaactct
ctccaactgttgacttctcctcctaccctgtcttcctccccttatatgcacaacaataac
aacaacaacacccgcctgactccaactctgactgtgcagcatagcccaaatctctctcta
agccccaacgcagcaaactctcaagagcctttggtccacattggcatcttccagtgcgag
tccactggtggttcacagtggcatctagagcagaccctagtcctggacagcacagacctc
cctgtccacgaggactgtcctgggtctactagtaagaacctggttcatttggactgggtc
tcccaagaagatgggtcacatgttctgactgttggtattgggacaaagatttatatgtac
ggccgtctcgctgggaaacctccagaactgggcttgacatccgatgccagtcgagaccag
agctcgtcgcgcctggttctgattcaatcggtggatctggtctcctctgtcgaaggctcg
ttacccattccagtctccctctcctgggtgagagatggcatcttggtagtaggcatggac
tgtgagatgcacgtctactcccagtggcagccgccagcgccaatcaaacccaactccccg
attgcccaggacaccgacatcagcagcagcgtctcctctatcatctcagccatcaggcag
tgccaggaggacggtcccggctccggggcccccgtgtcttcacttgcccctcccaaaaag
tccttgacgagatcaatgatgagtctggctcagaaactcagtgggaagagaacagcgtac
gacctgcctgtcgagatggaggattctgggcttttcgaagcagctcaccaactcttcccc
actctgcctcagtaccatcctgtacagttactggagctcatggatctcgggaaggttcac
cgtgccaaagcgatcttgtcccacctggtgaaatgcatcgcgggagaagttgtggcactt
aaagacagcacaaccaatcctgagaaacgtgtgcgctctcgaacaatcagcgctggagga
agcgccgcgagggatcggaagatgttcagcaaagcggagaacgccacccccgactacacg
gagataagctccatcccaccactgcctctgtacgctctgctggcagccgatgaggataca
ttaccaaaacctgataaagtgatcagtgtgagtggagatagtggacacggttccattcac
actgatgtttatgaagagctctttcacacacccaccgttgcagacctggaccccctggaa
gacgatcaggaggaaacggggaacaaggttatcgacctgtcccagtacagtcccacacag
tttggtccggaacatgctcaggttctgtccagtcacctccttcattccagtttgccgggc
ttaacccgcatggagcagatgtctctcatggcgctggccgacaccatcgctacctcaagc
acggacctcaaggacagccagagcacaagcaaaggtggagagacgctggacgagtgtggt
ctgaagttcttgctggccgtccaactccacaccttcctctctacctcactgcctccagca
caccgagcacagctgctgcggcaaggcctgtccacgtgtcattacgcctgggccttccac
tctgaggctgaagaggagctgctgaacatgctgccctccctccacaagggagagcccacc
tggcctgagctgcgctccatgggcgtgggctggtggctgcgcagcagcaacaagctacgc
aggtgtattgagaaggttgccaagacggctttacagagaaacaatgatcctctggatgca
gctatattttacctcgcactgaagaaaaaggcggtggtctggggattgtacaggtctcag
aagaatgccaaaatgaccgagtttttccgcaacaacttcagcgaggaccggtggaggaaa
gcggcgttgaaaaatgcgttttctctgcttggaaagcagcggttccagcattctgcagcc
ttcttccttctcgccggctcccttaaggacgctgtggaggtgtgcatagagaaactgcag
gacctgcagcttgccctggtgatctccagactgtacgagtctgagtttgagacggcgtcc
acctacaaaaagatcctccagagacatgttctgggacaagacaaacagattcaagcccac
caggacccgttcctacgcagcatggctcactgggtcctggaggactacagcggagcctta
gacactctactggagcagccggcaaccggcttcagctccgggtgcacggagagcaaatgt
gatgcaggttcctcctcggtgtccacgtgtaacccagaagtgttcaacttctacacctac
cttcgaacacacccacttctccttcgccggcattttggctcctcagacaaggcgaaggtt
ggactgacggctgagggccgccggcctgactccattagcctggaggagcggaggctgttt
ttcacagctgcgtacgcacacctgcaagctggctgccccatgctggcacttgaagtcctc
tccaagatgcccaaagtccgcaagcactccgagctgcccaaccaggccgctgacctcagt
gtcgggagcgtgaacggacaaacatccaacccggattggtctcagacgactctgaacggc
tacgagtcggacggacacagcttatccaacagccattcggattcagtgttaagttttgac
tggagccaccagtcaccggcgcatacagatgagcccctggagctgagatgggacagtgac
aaagatggagaggatgaagaggaagatgaggaaggagaagctacaaatgtcgacggcagc
agtgtgttccaggacacacgggacgccacgtcgccgctaatggagacggacacgggagag
gacagtgagaactgccacgacttcatcgctccgtgtcatgacatcttggcggcccaactg
aagtttaccgcctgcctgaagatcatgaccaatgagctccggacgctgtccaacgggtac
gagctggatggagggaagctgcgttgccagctctaccagtggttggagagagaggtggtg
gcactccagcgttgctgcagctacaagccgtgcttgccagagctgtctgtccagggtgat
gcccccgattctgggttggtggaggaggaacagccgggaagtcctcctggtcaccggcag
cggagtaggagacactggctgcagagcaaccagcccttactgaggatgttcctgagctac
tgcagcctgcacggctctcacggtggaggactggcctctgtgcgcatggagctcatcctg
ttgcttcaagagtctcaccaggatgactccactcagccggcggtgacgccatgttgtcag
ccgacatccattcctctcctgatggcgtgcacgtccaacgtaaagacggtggtcgccaac
cccatcgtctacctgaccaatctggcccaagacatcttgaggaccatcaattccctcgac
tctcctcctcatccggatgtggttaacaatgagatctatgtgctgcacacgctggctgcc
tccctgtcagcctgtatatatcagtgtctttgtgatggacacacccacagccatgtgaac
catttcacaggaatcgtgtatcagagtgtgttgctgtctcagaagccgccactcagaacc
gtcagcatggacgagtccgtccagcccaacacttcccctgcacagtggccaggtatcgcc
tctctcattcgcttgttgagctcggcaggcgaggagagccagccgggcttaactgtgctg
ctctgtgagatcctcaccgccgtcttcctcagtctgtttgttcacggcttggccactcac
tccagcaacgagctgtttcgcatcgtggcccacccactcgacagcaagctttgggtggcg
gtgttcgggggaggcgcccgcacccctgtcatcgacaaactcaacagcccatcaagaaca
cccccgccagcctcgccaagcagctcggacaggaagtccagacgattcaggctcctgacg
ccacgcagcggctccaaggacgacgccgggaacgagcgggagagcccgtctagtgccaag
cacggccctgtggtggaacaggaagctgcctccatctttaaagaacgatttgtccctcca
gagctcagcatttgggattacttcattgccaagccttcgctgccaccatctgaagaccga
atagaatatgactctgaggaaagccaggacagtcaggataaagaggaggaggatgactat
gaatacgaagacgtgtttgaccccagctctccgcaaagggagcattcaaaccataattcc
tacagttggtgtttgatgagactgtctatggttcagcttgtgttggtcaacctcaagtcc
ttctacccaatggcaggatatgatctcttggatctgcctgtggtgtctcctctgtgccac
gctgtgctgaagacgctgcagcgatgggagcaggtgctgcagaagaggctggagatcttc
gggggcccgccttccaagtacatctccaccctcctcaaggatgaaacggctgcaccgggc
cccgccctgctcaggcacaaggccttgtttgaaccttccaacaccccgttcagaacgagc
caccactcggcgcttcccgtgaagcgtctctggcagtttctagtcaaacaggaagaagtg
caggagacgttcattagaaacatttttaccaagaaacgggacccgaatgagtcgggtgag
gaccagactgacgatatgaaatgttcagggatggaggaaagaggaaacaatcagactgag
gcagacctcggcttccccggaggaaaggcacgcatcatccacaaggaatctgacatcatc
acggcctttgccatcaacaaggcaaaccgtaactgtttagtcatggcctccacccatgac
attcaggagttggatgtgtcatccatcttggccacgcagatcttgacatggatcgatgac
gaggacgcagaagtcaaaggcgttggcggcgacgacttcctggtggtccatgcgcgggat
gacttcgccgccctgcacggcaccacgccgtacactcacagtagccccggcacccccatc
aacatgccgtggctgggcggggtgcagacgggccgcggtgcagccgtggtgagcgctcga
cctggacttatgatcaaaagaaacataaacaatgtgagaagaatgacctcccatcccacg
ctgccttactacctgacaggcgctcaggatgggagtgtgaggatgttcgagtggggtcac
tcccagcagatcatctgcttcagaagccccggcaactccagagtcaccaggatacgattc
aaccaccaggggaacaagtttgggatcgtcgacgccgatggaggtttgagtctctggcag
accaacaccagcggcatcgcacccaagccatacctgacgctgcagtgccacaacaagacg
gctcacgactttgtcttcgtgggctcctcctccctcatcgccaccgcagggctctcgacc
gacaaccggaacgtgtgtctgtgggacactctggtcacgcctgccaacagcctggtgcat
gctttctgctgccacgagtccggggccaccgtgctcttgatggcctccaggcagcagctg
cttatcataggtggcaggaagggctggatcagcatcctggagctcgcccacaggcaccag
cgccagagcttccaggcccacgactcgtctgtcaaagctctggctgtcgacccgacggag
gactgcttcatcagcggatcagctgagggcaacattaagatctggagcctcgccacgatg
acggcgctctacgcgttccccaacgagcacgcccgccagtcgctgttcaggaacctcggc
acgggcgtcatgcagatcgaggtggggccgaccaatcacatcttctcctgcggcgccgac
ggcaccatgaagatgagggtgctccccgaccgcttcggtgtcgtccacaacaacaacaac
aacaaccacggcgacctcaagaacgacgtcaagctcatcatatag
DBGET
integrated database retrieval system
