Pseudoliparis swirei (Mariana hadal snailfish): 130196199
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Entry
130196199 CDS
T09868
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130196199 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130196199 (smarca2)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130196199 (smarca2)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130196199 (smarca2)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
130196199 (smarca2)
Chromatin remodeling factors
BAF complex
130196199 (smarca2)
PBAF complex
130196199 (smarca2)
GBAF(ncBAF) complex
130196199 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
BRK
HSA
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
130196199
NCBI-ProteinID:
XP_056274090
LinkDB
All DBs
Position
7:complement(16671864..16727709)
Genome browser
AA seq
1585 aa
AA seq
DB search
MSTPSDTSGGMSHPGPSPGAGLSPGPILGPSPGPDPSPGSVHSMMGPSPGPGTPNAAHGM
QGQSEYSQDGMYPMHKTMEGMNEKTMAEAMHFGHMKGVGMRSLHSGMGPPQSPMDQHSQG
YISPHPSPMGVHEHPSSPLSGGGGPTPPHMPPSQSGPMIPTEPQSAVPNMSQPGRGPSAF
SPVQLQQLRAQILAYKILGRGQPLPDNLQLAVQGKRSLPTMQQQQQQQAPNASPYNRPPG
MPMAPVGGPQSSPCPTPTMQQGHNPSAGPKPWSDGSGGDNQANAQKHLAPPVPGGGRPSP
TPPQASAPPSGGPVAPQAPGGQQQPSPILQMQKQNRITPIQKPQGLDPVGILQEREYRLQ
ARIAHRIQELETLPGSLPSDLRSKATVELKALRLLNFQRQLRQDVVACMRRDTTLETALN
SKAYRRSKRQTLREARMTEKLEKQQKLEQEKKRRQKHQEYLNSILQHAKDFKEYHRSMTG
KMQKLTRAVVTWHTNTEREQKKETEKIEKERMLRLLAEDEEGYRKLIDQKKDKRLAYLLQ
QTDEYVANLTTLVYEHKAAQAAKDKKKKKKKKKKKVERDGEGTSAIGPDGEPMDESSQMS
ELPVKVIQTETGKVLEGTDAPRSSQLEAWLEMNPGYEVAPRSDSEESGSEYEDEEEEEGA
KPELQDEKIIDPNGVEVFVAAANHIIESAKQDVDDEYVVPTGQPSSQASYYGVAHAIIEK
VEKQSTLLVNGTLKYYQTQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR
INGPFLIIVPLSTLSNWVYEMDKWAPSVVQVAYKGTPMLRRGLVPQLRSGKFNVLLTTYE
YVIKDKLILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPEL
WALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLK
KEVESQLPEKVEYVVRCDMSAIQKVLYRHMQRGILLTDGSEKDKKGKGGSKTLMNTIMQL
KKICNHPYMFQHIEESFAEHLGFSGNVISGIELYRASGKFELLDRILPKLLATNHRVLLF
CQMTTLMNIMEDYFSYRNFQYLRLDGSTKADDRAMLLTKFNEKGSQFFIFLLSTRAGGLG
LNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKL
NVDQKVIQAGMFDQKSSGNERRAFLQAILETEEQNEEEDEIPDDETLNQMIARNEGEFEL
FMRMDMDRRREEARNPKRKPRLMEEDELPSWIIRDEAEIERLTYEEEEEKMFGRGSRCRR
DVDYSDAMTEKQWLRAVEDGNLEEMEEEIRLKKRKRKRRPDKEPSSSSREDGGSSRGKKK
KRGRPPTDKHRPNPPKLTKQMNTIIDTVINYRDGSGRHLSEVFVQLPSRKELPEYYELIR
KPVDFKKIKDRVRNHKYRGVGDLERDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQ
KIAKDEESDDDSDEEEEDEEEDEEEDESEAEAKSVRVKIKLSKEGRGHDKGKKRQSRGKA
KPVVSDDDSDDDLDDNDQSDKSDDD
NT seq
4758 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccgtcagacacgtcaggtggtatgtcacatcctggcccttcacctggggcc
ggtctatccccggggcccatcttgggccccagccccggaccggacccctcaccgggctct
gttcacagtatgatgggacccagccctggacccggaacgcctaacgcagctcatggcatg
cagggacaaagtgaatactctcaggacggcatgtatccgatgcacaagaccatggagggg
atgaatgagaagaccatggcagaggcgatgcactttggccacatgaaaggtgtcgggatg
agatctctgcatagtggcatggggcctccgcagagtcctatggaccagcacagccaagga
tacatatccccccatccctcccccatgggtgtgcatgagcatccttctagtcccttgtca
ggaggcgggggacccacaccgccccacatgcccccctcccagtccggccccatgataccc
acagagccccagtcggccgtgcccaacatgagccagccgggccgcgggccttctgcgttc
agtccggtgcagctgcagcagctcagagctcagatcctggcctacaagatcctgggccgt
gggcaaccgctgcccgataacctccaactggctgttcagggcaagaggagtctacccaca
atgcagcagcagcaacaacagcaggcgcccaatgccagcccttacaacaggcctccaggc
atgcccatggcacctgtgggtggtccccagtccagtccctgtccgacccccaccatgcag
caggggcacaatccgagcgcgggacccaagccctggtctgacggttcgggcggcgacaat
caggccaacgcccagaagcacctcgcccccccggtccccggcggcggacgcccgtccccc
acgccccctcaggcttcggcgccgccctccggcggtccggtggccccgcaggcccctggg
ggccagcagcagccgtcccccatactccagatgcagaagcagaaccgcatcacgccgatc
cagaagccgcagggcctggaccccgtggggatcctgcaggagagggagtacaggctgcag
gctcggatcgctcatcggatccaggagctggagactctgccgggctcgctgccctctgac
ctcaggtccaaggccacggtggagctcaaggcgctgcgtttgctcaacttccagcggcag
ctgcgtcaggacgtggtggcgtgcatgaggcgggacacgaccctggagacggcgctcaac
tccaaggcgtaccggcgcagcaagcggcagacgctgagggaggcacgcatgacggagaag
ctggagaagcagcagaagctggagcaggagaagaagcgccggcagaagcaccaggagtac
ctgaacagcatcctgcagcacgctaaggacttcaaggagtaccaccgctccatgacgggc
aagatgcagaagctcaccagagccgtggtcacctggcacaccaacacggagcgcgagcag
aagaaggaaacggagaagatcgagaaggagaggatgctgaggctcttggcagaggatgag
gagggctaccggaagctcatcgaccagaagaaggacaagcggctggcctatctgctgcag
cagacggacgagtacgtggccaacctcaccacgctggtgtacgagcacaaggcggcgcag
gccgccaaggacaagaagaagaagaagaagaagaagaagaagaaggtggagagagacggc
gaaggcaccagtgccattggacctgatggagagccgatggacgagagcagccagatgagc
gagctgcccgtcaaggtcatccagacggagacggggaaggtcctggaggggacggacgcc
cccaggtccagccagctggaggcgtggctagagatgaaccctgggtatgaagtggccccg
cggtcggacagcgaggagagcggctctgagtacgaggacgaggaggaagaggagggggcc
aagccagagctgcaggatgagaagatcatcgatcccaacggagtggaagtgttcgtggcg
gcggccaatcacatcatcgagtcagctaagcaggatgtggatgatgagtacgtcgttccc
accggtcagccgagctctcaggcgtcgtactacggcgtcgcccacgccatcatcgagaag
gtggagaagcagtcgacgctgctggttaacggcacgctcaaatactaccagacccagggc
ctggagtggatggtgtccctgtacaacaacaacctgaacggcatcctggccgacgagatg
ggcctcggcaaaaccatccagaccatcgccctcatcacctacctgatggagcacaagagg
atcaacgggcccttcctcatcatcgtgccgctctcgaccttgtctaactgggtctatgag
atggacaagtgggccccctctgtggttcaagtagcctacaagggaacccccatgctgcgc
cgcgggctcgtgcctcaactgcgcagcgggaagttcaacgtgctcctgaccacctacgaa
tatgtcatcaaggacaagctcatcctggccaagatccgctggaagtacatgatcgtggac
gagggccaccgcatgaagaaccaccactgcaagctgacccaggtgctgaacacgcactac
gtggcgccgcgccgcctcctgctcaccggcacgccgctgcagaacaagctgcccgagctg
tgggcgctgctcaacttcctgctgcccaccatcttcaagagctgcagcaccttcgagcag
tggttcaacgccccgttcgccatgacgggagagaaggtggacctaaacgaggaggagacc
atcctgatcatccggcgtctgcacaaggtgctccgccccttcctgctgcgccgactgaag
aaggaggtggagtctcagctgccggagaaggtggagtacgtggtgagatgcgacatgtcg
gccatccagaaggttctttaccgccacatgcagagaggcatcctgctcacggacggctcg
gagaaagacaagaagggcaaaggcggctccaagaccctgatgaacaccatcatgcagctg
aagaagatctgcaaccacccctacatgttccagcacatcgaggaatcgtttgctgagcac
ttgggcttttcaggcaacgtcatcagtggaattgaactgtaccgtgcctctggaaagttc
gagctgctggatcgcatcctgccgaagcttctcgccaccaaccaccgggtgctgctcttc
tgtcagatgaccacactcatgaacatcatggaggactacttcagctaccgcaacttccag
tatctacgtctcgacggaagcacgaaggccgacgaccgtgcgatgctgctgacgaagttc
aacgagaagggctcccagttcttcatcttcctgctcagcaccagagccggcggcctcggc
ctcaacctgcaggccgccgacaccgtggtcatctttgacagtgactggaacccacaccag
gacctgcaggctcaggaccgcgcccaccgcatcggccagcagaacgaggtgcgcgtgctc
cgcctctgcaccgtcaacagcgtggaggagaagatcttggcggcggccaagtacaagctc
aacgtggaccagaaggtcatccaggcgggcatgttcgaccagaagtcctccggcaacgag
cgccgcgccttcctccaggccatcctggagacggaggagcagaacgaggaagaagacgag
atccccgacgacgaaaccctcaaccagatgatcgcccgcaacgagggtgaatttgagctc
tttatgcgcatggacatggaccggcggcgggaggaagccaggaacccgaagaggaagcct
cgcctcatggaggaggacgagttgccctcgtggatcatcagagacgaagccgagatcgag
cggctcacctacgaggaggaagaggagaagatgttcggccgagggtcgcgctgccgccgg
gacgtcgactacagtgacgccatgactgagaaacagtggctgcgggccgttgaggatggg
aacctggaagagatggaggaggagatccggctgaagaagcgcaaacgcaagaggcgtccg
gacaaggagccgtcgtcgtcgagcagagaggacggcggctcctccaggggcaagaagaag
aaacgcggccgcccgccgaccgacaagcaccgccccaacccgcccaaactcaccaagcag
atgaacaccatcatcgacacggtcatcaactacagggatgggtcggggagacacctgagc
gaggtcttcgtccagctgccgtcaaggaaggagctcccggagtactacgagctgatcagg
aagcctgtggactttaagaagatcaaggaccgcgtgaggaaccacaagtaccgtggcgtc
ggagacctggagagggacgtgatgctgctctgccacaacgcccagaccttcaacctggag
gggtcccagatctacgaggactccatcgtcctccagtcggtgttcaagagcgcccggcag
aagatcgccaaggacgaggagagcgacgacgacagcgacgaggaggaggaggacgaggaa
gaggacgaggaggaggacgagtcggaggccgaggccaagtctgtgcgcgtgaagatcaag
cttagcaaagaggggcgtggccacgacaagggcaagaagaggcagagccgcgggaaggcc
aagccggtcgtcagcgacgacgacagcgacgacgacctcgacgacaacgatcaatcggac
aagagcgacgacgactga
DBGET
integrated database retrieval system
