Pseudoliparis swirei (Mariana hadal snailfish): 130196243
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Entry
130196243 CDS
T09868
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130196243 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pswi03041
]
130196243 (snrnp200)
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130196243 (snrnp200)
Spliceosome [BR:
pswi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
130196243 (snrnp200)
Complex C
U5 SnRNP specific factors
130196243 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
130196243
NCBI-ProteinID:
XP_056274175
LinkDB
All DBs
Position
7:complement(6160217..6173361)
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPNGEVLSLVGKLEGTKMGDKAQRTK
PQKLEERRDKRRKRDEDRHDIKKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKMRDNQRRREVEQLLGPAEDTRYHVLVNLGKKIS
DYGGDKDLQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEHSDEDSEGEEAGVGCAL
SANLGATGDVMTAKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLDILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQFCTMLASAQSEVEKERIIGKMESDQELSKIL
YQLQETEKEDIIREERTRRERLRKSRVDDLEAMDIDHGESMASRQLLDLDDLAFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLLPIDKLPKYAQAGFEGFKTLN
RIQSKLYKTALETDENLLVCAPTGAGKTNVALMAMLREIGKHINPDGTINVDDFKIIYIA
PMRSLVQEMVGNFRKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGD
RTYTQLVRLIIIDEIHLLHDDRGPVLEALVARTIRNVELTQEDVRLLGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMSRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVCKLPDMLN
AEIVLGNVQTVKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSADPLLERRRMDLVHTAAN
VLDKNNLIKYDKRTGSFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIYEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFKKLPEEVIKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKFVHQFPKLDLAVHLQPITRSTLKVEL
TITPDFQWDDKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDKWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEALYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPM
EALAEQVFVDWHQKFQDILNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQR
KNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLAMAKPVYHAIMRHSPSKPAVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCTEEDLAPFLEKINDSTLKETLANGVGYLHE
GLSANERKIVEQLFNSGAVQVVVSSRSLCWGINISAHLVIIMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPMLDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVEHTLHDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDAILRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEDILSKAVRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPFFTSEHIKRCTDKGVESI
FDIMEMEDEDRTALLQLSDAQMADVARFSNRYPNIELSYEVAERENIKSGSPVLVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAMGVH
NYTLYFMSDAYMGCDQEYKFSADVKEADSDGDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgttactgcccgtagcttgcagtacgagtacaaagcgaactccaacttggtg
ctccaagccgatcgctccctgatcgaccgcacacggagagatgagcccaacggagaggtg
ctgtccctggtggggaagctcgaggggaccaagatgggcgacaaggctcagaggaccaaa
cctcagaagctggaggagagacgagacaagaggcgaaagagagatgaggacagacacgac
atcaagaaaatgaagggttttactcttctgtctgaaggcattgatgaaatggtgggcatt
gtgtacaagcccaaaaccaaagagacccgagagacgtatgaagtgttgcttagcttcatc
catgctgctttgggggatcagccgcgtgatattctgtgtggagcggcggatgaagtattg
gcagtgttgaagaatgataaaatgagggacaatcaaaggcggcgtgaagtagagcagctt
cttggacctgctgaggacactcgctaccatgtgttggttaatttgggcaagaaaatatct
gactacggaggcgacaaggacttgcagaatatggatgacaacattgatgaaacctatggt
gtgaatgtccagtttgaatctgatgaggaggagggggatgaagaccagtttggagaggtt
cgagacgaacactcggatgaagacagcgaaggagaggaggcgggtgtgggctgtgcactt
tcagcgaatcttggtgccacaggtgatgtgatgacggcaaagaaaaaagatctacatcct
cgagacatcgatgccttctggctccagcgtcagctcagccgtttctacgatgatgccatt
gtgtctcaaaagaaggctgatgaagttttagatatcctcaagactgccagcgatgatcga
gaatgtgagaaccagctggtgttgctgctgggcttcaacaccttcgatttcatcaaaatc
ctccgtcagcatcgccgcatgattcagttttgtaccatgctggcaagtgctcagagtgag
gtggaaaaggagcgcatcattggaaagatggagtctgatcaggagctctcaaagatcctt
taccagctgcaagagacagagaaggaggatattattcgggaggagcgaactcgcagggag
cggttgaggaagtctcgtgttgatgacttggaagcgatggacattgaccatggagagtcg
atggcctctcgacagttgctcgaccttgatgacctagccttcacccaggggagtcatttc
atggccaacaagcgctgccaactgccagacggctcatttcgtaaacagcgcaaaggttat
gaagaagttcacgtgcctgccctcaaacccaagcccttcgctgatgatgaggtgcttttg
cccatcgataagttgcccaagtatgcacaggctgggtttgaaggtttcaaaaccctgaac
cgcatccagagcaaactgtacaagacagccttggagactgatgagaacctgctagtgtgt
gcacccacgggagctggtaagaccaatgttgctttaatggcaatgctgagagaaatcgga
aagcacataaacccggatggaacaatcaatgtggacgacttcaaaatcatctacattgcg
cccatgcgctcgctagtacaggagatggtgggaaatttcagaaagcgcttggcaagttac
ggcatcacagtgtctgagctgacgggagaccaccaactctgtaaagaggagattaatgcc
actcaaatcatcgtctgcacccctgagaaatgggacatcatcacccgtaaaggtggagat
cgtacctacacccagctagtgcggctcattatcattgatgaaatccacctcctgcacgat
gaccgtggacccgtgttggaagctctggtggcaagaaccatccgcaatgtggagctgacc
caggaggatgtgcgtctgctgggcctcagtgccacactgcccaactatgaagatgtggct
acctgcctgcgtgtagatcccgctaagggactcttctactttgacaacagtttccgcccg
gtgccccttgagcagacttatgtcggcatcacagagaagaaggccatcaagcgtttccaa
atcatgaacgagattgtctatgaaaagatcatggagcatgctggaaagaaccaggtgctg
gtatttgtccactcccgcaaggagacgggaaagacggcacgggccataagagacatgtgt
ttggagaaggacacgctgggtcttttcctcagagaggggtcagcttctactgaagtgttg
agaactgaggcagagcagtgcaagaacctcgaactgaaggatttgctgccctatggcttt
gccatccatcacgctggcatgagcagagttgatcgtactctggtggaggatctgtttgct
gatcgacacatccaggtgttggtgtccacagctactctggcttggggtgtcaacctgcct
gctcacaccgtcatcatcaaaggcactcaggtgtacagcccagagaaaggcaggtggact
gaacttggagccctggacattctgcagatgcttggtcgagccggccgtccccagtacgac
accaagggagagggaatcctcatcacgtcccacggagagctgcagtactatctgtccttg
ctcaaccagcagctgcccatagagagtcagatggtgtgcaagctgcctgacatgctcaat
gctgagatagtgctgggcaatgtgcagactgtgaaggatgctgtcaactggctcggttac
acctacctgtacgtgcgcatgctgcgtaaccccaccctgtatggtgtctcccacgatgac
cggagtgcagatcccctgctggagagacgcaggatggacctggtgcacacagcagccaat
gtcctggacaagaacaatcttattaaatatgacaagaggactggcagcttccaggttact
gaccttgggcgtattgccagtcacttctacatcactcatgactccattcaaacctacaac
cagctgctgaagcccactctcagtgagattgagctcttcagagtattttcactctcctca
gagttcaggaacatcactgtgagagaggaggagaagttggaacttcagaagcttctggaa
agagttcccattcctgtcaaggaaagcattgaggagcccagcgctaagatcaacgtgctg
ctccaggcgtacatctcccaactcaaactggaaggctttgccctcatggccgacatggtg
tatgttacacagagtgctggaaggttaatgcgggccatatatgagattgttctcagcagg
ggctgggctcaactgacagacaagacaatgaatctctgtaagatgattgacaagagaatg
tggcagtcgatgtctccactgcgacagttcaagaaactgccagaggaagtgatcaagaag
atcgagaagaagaacttcccctttgagcgtctctatgacctcaaccacaatgagattggt
gaactgatccgaatgccaaaaatggggaagaccatccacaaattcgtccaccagttcccc
aaactggacctggctgtccatctgcagcccattacccgttctaccctgaaggtggaactc
accatcacgcctgacttccagtgggacgacaagattcatggatcatctgaggctttctgg
atcctggttgaggatgtggacagcgaggtcatcctccaccacgagtacttcctgctcaag
gccaagtacgcccaggacgaacacctcgtgactttctttgtcccagtgttcgagcctctg
ccgccacagtacttcatccgcgtggtctccgacaaatggctctcctgtgagactcagctc
ccagtgtccttccgtcatctgatcctaccagagaaataccccccacctaccgagctgctg
gacctgcagccgctgcccgtcaccgctctcaggaactctgcctttgaggctctctaccag
aacaaattccccttcttcaaccccattcagacacaagtgttcaacgcggtgtacaacagt
gatgacaatgtgtttgttggagctcccaccggcagtggaaagaccatctgtgcagagttt
gctattctgaggatgctgctgcacaacgcagaaggtcgctgcgtctacatcacgccaatg
gaagcactggctgaacaggtgtttgtcgattggcaccagaagttccaggacatcctgaac
aaaaaggtggtgctgctgacgggagaaacgagcacagatctgaagctcttgggaaaaggg
gacattattgtcagtacccccgacaaatgggacatcctgtctcgccgctggaaacagagg
aagaacgtccagaacgtcagccttttcattgtggatgagacgcacctcatcggaggagaa
aatggacccgtgctggaggtcatctgctccaggatgaggtacatctcctctcagattgag
cgccccatccgcatcgtggccctcagctcatctttgtccaacgccaaagacgtggcccac
tggctgggctgcagcaccaccgccacattcaacttccaccccaacgtcagacctgtgccc
ctggagctgcacatccagggcttcaatgtgagtcacactcagactcgcctgctggcgatg
gctaagccggtgtaccacgccatcatgaggcattctccctccaaaccggccgtggtgttc
gtcccatcccgaagacagactcgcctcacagccatcgacatcctcacgttctgcgctgct
gacgtggttcctcagaggttcttgcattgcactgaggaagaccttgctccattcctggag
aaaataaatgactccactctgaaagagactctggccaacggcgtgggctacctgcacgag
ggcctgtctgcaaacgaacgcaaaattgtggagcagctcttcaactcgggtgctgttcag
gtggtggtgtcctctcgttctctctgctggggcatcaacatctctgcacacctcgtcatt
atcatggacacccagtactacaatggcaaaatccatgcctatgtggactatcctatctac
gacgtcctccagatggtgggcaaggccaacagaccgatgcttgatgatgagggacgctgt
gtcatcatgtgtcagggctctaagaaggacttcttcaagaagttcctgtatgagccgctg
ccagtggagtctcatttggaccactgcctccatgaccacttcaatgcggagattgtaacc
aagactgtggagaacaagcaggatgccgtggactacctgacctggacattcctctaccgc
aggatgacccagaaccccaactactacaacctgcaaggcatgtcacatcgtcacctgtca
gaccacctgtctgagctggtggaacacacgctgcatgacctggagcagtccaagtgcatc
agcatcgaggatgaaatggacgtagcgccgctcaacttgggcatgatcgctgcctactac
tacatcaactacaccaccatcgagttgttcagcatgtccctgaatgccaagacaaagatc
cgtggattgattgagatcatttccaacgctgccgaatacaagaacattcccatcagacat
cacgaggatgcaattctccgacagttggcacagaaggtgccccacaaactgaacaacccc
aagttcaacgatccccacgtgaagacgaacctgctgctgcaggcccacctctccaggatg
cagctgagtgcggagctgcagtcggacacggaggacatcctgagcaaggcggttcgtctg
atccaggcctgcgttgatgtgctgtccagtaacggctggctgagtcctgcactggcagct
atggagctggcccagatggtcactcaggccatgtggtccaaggactcgtacctcaaacag
ctgcccttcttcacctcggagcacatcaagcgctgtaccgataagggtgtggagagtatc
tttgacatcatggagatggaggatgaagacagaactgctttgctgcagctgtcagacgcc
cagatggccgacgtggctcgcttctctaaccgctaccccaacatcgagctgtcctatgaa
gtggcagaaagggagaatatcaagagtggcagtcccgttctggttcaagttcagctggag
agagaggaggaggtgactgggcccgtcatcgcaccgctcttcccacagaaacgtgaggag
ggctggtgggtggtgatcggagaccccaagtcgaacagcctgatctctatcaagaggctg
acgctccagcagaaagcaaaggttaagctggactttgttgcaccagcgatgggcgtgcat
aactacaccctgtacttcatgagtgatgcatacatgggctgtgatcaggagtacaagttc
agcgccgatgtgaaggaggccgacagtgatggagacagtgactcagactaa
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integrated database retrieval system
