Pseudoliparis swirei (Mariana hadal snailfish): 130196292
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Entry
130196292 CDS
T09868
Name
(RefSeq) LOW QUALITY PROTEIN: intermembrane lipid transfer protein VPS13A-like
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130196292
Membrane trafficking [BR:
pswi04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
130196292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
130196292
NCBI-ProteinID:
XP_056274257
LinkDB
All DBs
Position
7:19223824..19263196
Genome browser
AA seq
3272 aa
AA seq
DB search
MVFESLVVDVLNRFIGDYVVNLDSSQLKLGIWGGDAVLRNLEIKENALSQLDIPFKVRAG
HIGQLQLKIPWQNLYTQSVEATLDGVYLLIVPTSSIKYDAAKEEKQLQEARQSELHRIEE
TKLKAAENEDPNLEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDVTNPNCPMSFGVSLK
NLSLQTCDENWNPKLLDENSRLFFKLVQLDNLFAYWNVQSILFSNHSADEALQCLQSSVE
IHNSLSISHDFIFRPISAGAKLRMNPRSDVDFSSPKVDLMVNLSEVAIELNRPQYISILE
LLGSVDMMSRNLPYRKYRPMVHVHKNACIWWRYVITGILEVDVKPHLNMWSWQHIRSHRR
MVKSYRELYKTKITNKKPSEEQLKALEEPEKTLDIFNITLARQQAEMEASKEGLRIYRPG
LKMEEEETQGWMSWVWNWGGEADEETKEVKTGGFDELLTTAEKAKLYTAIGYSETAANPN
LPKNFEDMKVNFHMERLSLSIKDNTDTNEIIKLTVEELKSTLTQRPGAQAIKLTAQLSLF
EVTGLASNRPAPTLLSSRKAATAAGMPLLCFLFETNPLDESANQRLHVESQPLEIIYDAI
TVNSMSVFFMPPDDLQLDELTNATLMKLEQFRDRTATGLMYVIETQKVLDLKVNLMASYV
IIPQTGFYNGTQNILLLDLGHFKMSSQSKKDLPQLSVGSSNLEDIMSRAYDSFDIQLRSL
QFLYSKPDGDWKMARKQKQSPLHILEPVDLKVVFSRAMVIKDSRMAKYKMSGELPLLSLR
ISDVKLRNVLQLVESIPLPESRPAASSSMPKPKQSFTPQLTPRRSLNLADQRSSLMFESC
ETISITSLGSEEDLFYDAPSSPIGNRTFFPDNPMPLSYKRKGSEAQKNMTEFIMTFEISE
FSVQLCRVSGDQEVTVLHLDIEGLGTELKLRTFDMTSNTYLREICLKCPEYMDSEDKQVQ
LITTLDNKEVDLLTLEYIKADKNGPEFKTQHNNTEQLIKVTFSSLDVHLHTEALLNTMNF
LSNLLPPSTKKEGGKEELPAIPEEDEADAEREGEKKEEATVTRKKSTKTSKFANVVNLHI
RADLCCLKVFIRGQKARIAEISIEGLVSEVLMRKKEMEVLANLKNIVILDCDKDALYKKA
VSIADEEVFSFRMVNYTDATEGDAYLDMSNVDTSVTLTVGCIQVIFLNKFVSSILGFINN
FQEAKEALAEVTVQAAEKAASGVKELAERSTRIALNVHFNAPIIFLPQSSSSSNVIVADL
GLLSVKNAFSKQPFKSDAKIPPVVDEMIVRLTDLKMYRTTYVDEGFQGETQLLMPVSLDV
AIQRNLSSNWYHSIPDIEIAAHLKPMSLILSQDDMTVVLRTLSENLSETSDALPPPAPPP
STDRSSDSVSIKGSPGTGPASSNIVVTAAVVEPHKSSKLKTTLKVDFQFDSMTLVLYSPN
ANEIQLLDSHDEQLKLAEFTLGTISTSVDMFSDSSMKASVRLAACLLDDKRSRIKMVTPR
MIAMRPGAEQNMMVEVNYRQGRDGITLDTVVQDVYLCASMEFLLTVADIFLKATQQGFDQ
KPQPKSSTGVGEKKNINSSTTSRESIVPTVVSKTEINVLVRNPEIVFVADLTRADAPALV
MTTQCELVMKSGAEGSQMTAVIKDLKVVACPFLREKREKNVTTVLQPCQVFFQSTQPLTS
PQAMEVSINALTLKVSPIIINTVMTIQSALTPTAETPEELVSPVPVDLWEKRGWKELKLW
FLEEEGDENTESLAPLIPQGESLKVTIKSVCLTLEAGVGHRTIPMLLAKSSFHGEVTNWS
TLINLHSELNLEVHYYNEMMGVWEPLLEPLEDETRDGFRSWRLELKMKKKPVKYTGVSDE
VDYLVPDYKTVIVISSKDQLNITLSKCGLAMLGNLGTAFAVAAKQTADSFQKDEAPFVVQ
NRLGLPVSVRHSEMFCPIGQESTDDTVKLQDGETVGMDYSSKADSDQFSAMISLSGKDYY
IEPTPMGHTSASVIPLIKVGGGMYNVMHKDSGVTRFLVCQITSVEGSKYIKIRSPFQIIN
HFSIPFKVLEGSTCLGTALPTEEFCVPLDSYRSELSLQPITEDDADDRCEQFECSEGFSY
DEVSNKQPETCLQQTCRRRGDQGGVLMVNMVPLRDAVTFKHTGGVEENFDVPFVLHLWPS
ILLRNLLPYPISYKLKDSGVSXPEATLNPGHSAQLHTAVINQSKLDLCLLNYMVQDWSAE
YSFHSGEEEITFIVFQSLRENDEDDGEGTARKRAELDIAVHVQYDLGQTVVAIHSPYWMV
NKTGRLLQYKADDIHRKHPLEYDMPLLFSFKPRYFLKNNKVRLMISESELSDEFSLDTVG
SYGDVKCKSQYKDYLVGVKIDASSFSLTRVVTFLPFYLLVNRTKHSVFICEVGQDNWTEA
QPEQSALPFWPENDTKQLKIKVEGCLLPPRTLDFTRQENCLLLHLDSSVGGIAVDVNLSE
HSATIRFSEYHEGAAPFLIINHTKDQTLQLYQSARTETSWVADELLDLSFSREEDSSQKE
GEKEELAAGKAVHYTWTEPTGSRELCWNCGTYSGKLKTEKDLREDMGNEGKLFVISFYEG
LQRVVLFTEEKRIYKMLCESEKAQLAEQEIILSLQNVGVSLVNNSSGQEISFIGITSSDV
VWEFKPKKKNRWKTLNSKEAEMLEESYKEYNESGPVDHAIVDLENNFQVSFTPNGVDMRM
LQPCEAPLRRHFLPGVKVEYSVSPRQSAYRVQIHRIQIQNQLPGAIFPFVFYPVKLPKSI
TMAAEPKPLTDISIVTRTAGHSDISRIKYFKVLIQEMDLKLDLGFLYAILDLFTPEDASI
VNSDQEVELFEKDIEHIKTELNHSSDADTSPISLYEYFHISPIKLHLSLSLSTGGDDGLK
EKRDKELIPIQSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFCTTQQLQWKVIRHYSKQ
AIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFIEGMALGVKALVG
GAVGGIAGAASRITGAMAKGVAAMTMDEEYQQKRREAMNKQPSSLREGLARGGRGLVSGF
VSGITGIVTKPIKGAQKEGVAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRAAESS
QDVTSLRPPRFIHEDGVIRPYKEREGLGSQMLKKIENGRFAKYRYFAHAKVNESDLLMIT
KRGIFFVTKGTFGQLTCEWQYLFEEFTKDPMIVEDRRLRIEAKERVKSVFHAKEFGKIIN
FKNAELAKWVLARLDDARENLPKFXLVKKSDK
NT seq
9819 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcttggtggtcgatgtcctcaaccgattcataggggactacgttgtc
aaccttgacagctcgcagctaaagcttggcatatggggaggtgacgctgttcttagaaat
cttgagataaaagaaaatgctttgagtcaactggacattccttttaaagtgagagcaggt
catataggacagttgcagctaaagataccatggcaaaacctctacactcagtcagtggag
gcgacactggatggcgtctatctgctcatagtcccaacatcaagtataaagtatgatgca
gcaaaggaggaaaagcagctacaggaggctcgtcagagtgagctacatcggatagaggag
acaaagctgaaggctgcagagaacgaggacccaaatctggaaaagcaggacacctttgtg
gagaaacttgtcactcaggtcatcaaaaacctgcaggtcaagatctctaacatccacgta
cgctatgaagatgatgtcacgaatccaaattgtcccatgtcatttggagtgtcgcttaaa
aacctcagccttcagacatgtgatgagaactggaatccaaagcttctggatgagaactcc
aggcttttcttcaagttggttcaactagacaacttgtttgcctactggaatgtccaatct
atactcttctccaatcacagtgcagatgaggccttgcaatgtctccagagcagcgtggag
atccacaactccctgtctatcagccatgacttcatttttcggccgatctcagcgggcgct
aaactgcgaatgaatcccaggtcagatgtggacttctcctctcctaaagtggacctcatg
gtcaatctcagtgaggtggccattgaactcaaccgaccccagtacattagcatcctggag
ctgctgggctcggtggatatgatgtctcggaatctgccgtacaggaagtacagacccatg
gtccacgttcacaagaacgcctgcatttggtggaggtacgtgatcacaggcatcttggaa
gtggatgtgaagccgcatctcaacatgtggtcatggcagcacattcgcagtcaccggcga
atggtaaagagttaccgagagctctacaagaccaagatcaccaacaagaagcccagcgag
gagcagctcaaggcattagaggagcctgagaagaccttggatatttttaacatcactttg
gccagacagcaggctgagatggaggcgagcaaggaaggcctacgcatttaccgtccaggg
cttaagatggaggaagaggagactcagggctggatgagctgggtgtggaattggggagga
gaggctgatgaagaaactaaagaggtcaagactggaggctttgatgagctgttaaccacc
gctgagaaagccaaactctacactgccattggatacagtgagacagctgcaaatcccaac
ctgccaaagaattttgaggacatgaaggtcaatttccacatggaacgtctgtctctgtcc
atcaaagacaacacggacacaaatgagatcatcaagctgactgtggaggagctcaagtcc
acactcacacagagacctggagcacaagccatcaaactcacagctcagcttagtctgttt
gaagtcaccggcctggccagtaaccggcctgcaccgaccctcctgtcatcacggaaggca
gccacggcagccgggatgccgctgctttgcttcctgtttgagaccaacccgttggatgag
agcgctaaccaacggcttcatgtggaatcacaacccttggaaatcatctatgatgctata
acagtgaacagcatgtcagtgttcttcatgcctcctgacgacctgcagctggatgagctc
accaacgcaaccctcatgaaactggagcagttcagagaccgcacagccaccggtttgatg
tacgtgatcgaaacgcagaaagtcctcgacctgaaggtgaacctgatggcctcatatgtc
atcattccacagactggcttttacaatggcacgcagaacatcctactgttggaccttggg
catttcaagatgtccagtcaaagcaagaaagatctgcctcagctttcagtgggctccagc
aacctcgaggacatcatgtccagagcgtacgacagctttgacatacagcttcgcagcctg
cagttcctttatagtaaaccagatggtgactggaaaatggctcgtaagcagaaacagtca
ccgctccacattctagagccagtcgatctaaaagtggttttcagcagggcgatggtgatc
aaagactcccgcatggcaaagtataagatgtctggagagctccccctgctctctcttcgt
atatccgatgttaaactccgaaatgttctgcagctggtagaaagtatcccactgcctgag
agccgacctgctgcatcatcctccatgccaaagccaaagcagtcgttcaccccacagctc
actcccagacgatctctgaacttagctgaccagcgctcctctctcatgtttgagtcatgt
gagaccatcagcatcacctcattggggtcggaggaagatttgttctacgatgctcccagc
tctcccattggtaatcgtacattcttcccagataatcccatgcctctgagctacaaaaga
aaagggtcagaagcgcagaagaacatgacagaattcatcatgacgtttgaaatcagtgag
ttttctgttcagttgtgtcgtgtgtccggggatcaggaggtcacggtgctccacttggac
atcgagggtctgggcactgaactgaaactacgcacctttgacatgacctctaacacctac
ctacgagagatctgcctcaagtgccctgaatacatggattctgaagataagcaggttcag
ctgattactactctagacaacaaagaagttgaccttctcaccctggagtatataaaagct
gataagaatggccccgagttcaagactcaacacaacaatacagagcaactcattaaggtg
accttttcatccctggatgtccatctccatacggaggctcttctcaacaccatgaacttc
ctcagcaacctccttcctccatccactaaaaaggagggagggaaggaggagctccccgcc
atcccagaggaggatgaggcagatgcagagagggagggagagaagaaggaggaagcgact
gtaaccaggaaaaaaagcacaaagacttcgaagtttgcaaatgtggtaaatctgcatatc
agagctgatctttgctgtctgaaggtttttattcgaggacagaaagccaggatcgcggag
attagtatcgaaggtctggtgtctgaggttctgatgaggaaaaaggagatggaggttctg
gccaacctgaagaacattgtgatcctagactgtgacaaagatgcgctttacaagaaggct
gtgtctatcgcagatgaggaagtgttttctttccgcatggtgaactacacagacgcaacg
gagggagatgcctatctggacatgtctaacgtggacacctctgtcacgctgaccgtggga
tgcatccaggtcatcttcctcaacaagtttgtctcctccatactgggattcatcaataac
ttccaggaggctaaagaggccctagctgaggtgactgtccaggctgcagaaaaggcagca
tcaggtgtgaaggagctggcagagcggagcactcgcatcgctctgaacgtccacttcaat
gcacccatcatcttcctgccccagtcctcctcttcctctaatgtcattgtagctgacctc
ggtctgctgtctgtcaagaacgccttttccaagcagcccttcaaaagcgatgccaagatc
ccgcctgtcgtggatgaaatgattgtgaggctgactgacctcaagatgtacaggacaaca
tacgtagatgaaggttttcagggagagacccagctgttgatgccagtcagcctagatgtg
gcaatccaaagaaatctttcatccaactggtaccacagcatacccgacatagagatcgct
gctcatcttaagcccatgagtctgatcctcagccaggatgacatgaccgtggtcctgagg
actctgagtgagaatctgtcagagacttctgatgctcttccacctccagctcctccaccc
agcactgaccgctcctctgactccgtttccatcaaaggatccccgggcactggacctgct
agcagcaacatagtggtgacggctgctgttgtggagcctcacaaaagcagcaagctgaag
accacactcaaagtagacttccagtttgactcgatgacactcgtcttgtatagccctaat
gcgaatgagatacaactgttggattcccatgatgaacagctgaagttggcagagtttact
ctgggcaccatctccacctccgtcgacatgttctccgacagctccatgaaggcttcagtc
cgactggctgcctgccttctagatgacaagcgatccagaatcaagatggttaccccgagg
atgattgcaatgcgtcctggtgcagaacagaacatgatggtggaggtgaactaccgtcag
ggccgtgatggcatcactttagacacagtggtgcaggatgtgtacctgtgtgccagcatg
gagttccttctcacggtggcagatatctttctcaaggccacccagcagggttttgatcaa
aagcctcaacccaagagcagtactggggtgggagagaaaaagaacatcaactcctccacc
acatcgagagagtccatagttccaactgtggtgtcaaagaccgagattaatgttctggtg
cgtaacccagagatcgtttttgtggctgacttgacgcgtgctgacgccccggccctcgtg
atgaccacgcagtgtgagttagtgatgaaaagtggtgcagagggctctcagatgactgct
gttatcaaggaccttaaggtcgtggcctgtcccttcttgagagagaagagggaaaaaaat
gtgaccacagtgctgcagccgtgtcaggtgttcttccagagcactcagcccctgacctcc
cctcaggctatggaggtctccatcaacgctctcacattgaaggtatctccaataatcatc
aacacagtgatgaccatccagtctgcgctgactcccacagcggagacccccgaggagctg
gttagtcctgttcccgtggacttgtgggagaaacggggctggaaggagctcaaactttgg
ttcctagaagaggagggggatgaaaacacagagtcactggccccactgataccacaggga
gagtcgttaaaggtgaccatcaaatctgtctgtctgactctggaggctggagtgggacac
cgcactatccccatgcttctggccaagtcctccttccatggagaggtcacaaactggtcc
acacttattaacttacacagcgagctcaacctggaggttcactattacaatgagatgatg
ggagtgtgggaaccgctgctggagcccttagaagatgagacaagagatgggtttagatca
tggagactggaactgaagatgaagaagaagccagtgaagtacacaggtgtgtcagatgaa
gtagattaccttgtgccggactataagacagtcatcgtcatcagcagtaaagaccagctc
aacatcaccctctccaagtgtggcctggccatgcttggtaatctgggcacggcctttgca
gtggctgccaaacagacagcagactctttccagaaggatgaagctccgtttgtcgtgcaa
aaccgccttggcctgccagtgtccgtccgccacagtgagatgttttgtcccatcggccag
gagagcaccgacgacactgtgaagctgcaggatggagaaaccgttgggatggactattcc
agcaaagctgactcagaccagttctcagccatgatctccttgagtggaaaggactactac
atagagcctactccgatgggccacacctcagctagtgtgatccccctgatcaaggtgggc
ggggggatgtacaatgtcatgcacaaagactcaggagtgactcgcttcctggtctgtcag
attacctctgtggagggaagcaagtacatcaagatccgctcaccgttccagatcatcaat
catttctcaatcccattcaaagttttggaaggatcaacttgtctaggtacagctctcccg
actgaagagttctgtgttcctctggactcgtacagatctgagctgagccttcagccgata
acggaggacgatgctgacgatcggtgtgagcagtttgagtgctcggagggtttcagctac
gacgaagtcagtaacaagcagcccgagacatgcctccagcagacctgccgtcgccgtgga
gatcagggtggtgtactgatggtcaacatggtgccattaagagatgctgtgacattcaaa
cacaccggaggtgttgaggagaactttgatgttccctttgtgcttcacctgtggccttcc
attctgctccgcaacctgctgccttaccccatctcctacaaactgaaggacagcggagtc
tccngccctgaggccactttgaaccccggccactcagcccagcttcacactgcagtcatc
aaccaatcgaaactcgatctctgcctcctgaactacatggttcaggactggtctgctgag
tatagtttccacagtggcgaggaagagatcaccttcatagtgttccagtctctgcgagag
aatgacgaagacgatggtgaagggacggcgaggaagagggctgagttggatatcgcggtg
catgtccaatatgacctggggcaaacggtggtcgccatccactccccgtattggatggtg
aacaagacgggcaggttgctgcagtacaaggctgatgacatccaccgtaaacacccgctg
gagtacgacatgccgctgctcttctccttcaagcctcgctacttcctgaagaacaacaag
gtccgtcttatgatctcagagagtgaactctctgatgagttctctctggatacagttggt
agctatggagatgtcaaatgcaaaagccaatacaaagattacttggttggtgtgaagatt
gacgcgagcagtttcagtctgacccgcgtcgtgacctttttgccgttttacttgctggtc
aacagaaccaagcacagtgtcttcatatgtgaagtggggcaggacaactggacagaggct
cagccagaacagtcagctcttccattctggcctgagaatgacacgaagcagctaaagatc
aaagtagaaggttgtttattgcctcctcggactcttgacttcacacgacaagagaactgc
ttattgctgcatctggacagttctgtgggtgggattgctgtagatgtgaacttgtcagag
cactcggccacaatccgattctctgagtaccacgaaggtgcggcccctttcctcatcatc
aaccacacaaaagaccagactctgcagctctatcagagcgcccggacagaaacctcgtgg
gtggctgacgagctactcgacctctccttctcacgggaggaggacagctctcagaaggag
ggggagaaggaggagctggcggctgggaaagctgtgcactatacctggactgagcccact
gggtcccgagagctttgctggaactgtggtacttacagtgggaagctgaagactgagaag
gacctgcgtgaggacatgggcaatgagggaaaactgtttgtgatctccttttatgaaggg
ctccagcgtgtcgtcctgttcaccgaggagaaacgtatctacaagatgctctgcgagagc
gagaaggcgcagctggccgaacaggaaatcatcctctcgctacagaacgtgggtgtgtct
ctggtcaacaacagcagcggccaggagatctcgtttattgggatcacaagctctgatgtg
gtgtgggaattcaagccaaagaagaagaatcggtggaaaactctgaattctaaagaagct
gagatgctggaggagagctacaaagagtacaatgaatctggacccgtagaccacgccatc
gttgacctggaaaacaacttccaggtgtcctttacgcccaatggtgtggatatgaggatg
ctgcagccgtgtgaggctcctctcaggaggcactttcttcctggggtgaaggtggagtac
agcgtatcgccacgacagagtgcctaccgtgtccaaatccatcgcattcagatccagaat
cagctgccaggagccatcttcccttttgtgttttaccctgtaaaactgccaaaatccatc
accatggctgcagaacccaaacctctaactgatatcagcattgtcaccagaaccgcagga
cactctgatatctctcgcatcaagtactttaaggtgttgattcaagagatggacctgaag
ctcgacctgggcttcctgtatgccatcctagacctgttcacacctgaggatgccagcatt
gtgaactcggaccaggaggtggaactgtttgagaaggacatcgagcatataaagacggaa
ctaaaccattcctctgacgcggacacctctcctatcagcctctacgagtacttccacatc
tcccccatcaagcttcatctgagtctctctctgagtacggggggagatgacggcctgaag
gagaagcgagataaggaactaattcccatccagtccctcaacctgctgctgaagagtatc
ggcgccacactcaccgatgtgcaggatgttgtctttaagctggcgttcttcgagttgacc
ttccagttctgtaccacgcagcagctccaatggaaggtcatcaggcattattccaagcag
gctatcaagcagatgtatgtgctggtgctgggcctggatgtacttggaaacccttttggg
ctgattagaggactgtcggagggagtggaggcattcttctatgagccttatcagggagcc
atccaggggccggaggagttcattgaaggaatggctctcggggtgaaggccctggtggga
ggagctgtcggggggatagcaggcgcagcctccaggatcacaggagccatggcaaagggt
gtcgctgccatgacgatggatgaggaataccagcagaagagacgagaggctatgaacaag
cagcccagtagcctgagagaggggctggccaggggggggaggggattagtgtctggtttc
gtcagtgggatcacagggatcgttaccaaacccatcaaaggagcccagaaggagggagta
gcgggcttttttaaaggtgttgggaaaggtctggtcggcgcagtggccagacctacagga
ggcatcattgacatggccagcagtactttccaaggaatcaagagggcagcagagagttca
caagacgtcacctctctgcgtcctcctcgcttcatccacgaagatggcgtcatacgacca
tataaggagagggagggcctcggaagtcagatgctcaagaaaattgagaacggacgtttt
gccaagtacaggtacttcgctcacgccaaggtcaacgagtccgacctcctcatgatcacc
aagagaggaatattttttgtgaccaaaggcacctttggccagctgacctgtgagtggcag
tatctgtttgaagagttcaccaaggacccgatgatcgtagaggaccggcggcttcgcatc
gaggccaaggagagagtgaagtctgtcttccacgccaaggagtttgggaagatcatcaat
ttcaaaaatgctgagttagccaagtgggtgcttgccagattggacgacgcaagagagaat
ttacccaaattctgactcgtcaagaagagcgataaatga
DBGET
integrated database retrieval system
