Pseudoliparis swirei (Mariana hadal snailfish): 130196345
Help
Entry
130196345 CDS
T09868
Symbol
cacna1ba
Name
(RefSeq) LOW QUALITY PROTEIN: calcium channel, voltage-dependent, N type, alpha 1B subunit, a
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04010
MAPK signaling pathway
pswi04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130196345 (cacna1ba)
04020 Calcium signaling pathway
130196345 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130196345 (cacna1ba)
Ion channels [BR:
pswi04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
130196345 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
130196345
NCBI-ProteinID:
XP_056274345
LinkDB
All DBs
Position
7:31119035..31181797
Genome browser
AA seq
1939 aa
AA seq
DB search
MRAPLAANDASGNTWNWLYFLPLIIIGSFFMLNLVLGVLSGEFAKERERVEKRQEFLKLR
RQQQIERELTGYLEWICKAEEVMLAEEDEEAEQQSLDGAWYKRRHNAVLKRAKKSKNDLI
NAEEGEDHFTDISGVCVCPPGRAGLRKESSSLLRRKERRLRFTVRRLVKSQSFYWTVLCV
VGLNTLCVAIVHYDQPAWLTFALYLAEFVFLGLFLAEMSIKMYGIGAQSYFHSSFNCFDF
GVIVGSVFEVIWATIKPEASFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSIIS
LLFLLFLFIVVFALLGMQLFGGQFNFEDETPTTNFDTFPAAILTVFQILTGEDWNAVMYH
GIEAQGGVRRGMFSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEQEEAINK
KLALQKVKEVKEVKEVKEVSPVSASNISVSAKEEQRSGRSLSVWEQRAGQLRRQNRASCE
VLYSELELEERLHLKTHLDRPLEVRPRDGHRHHRHKAAAPPPPAAPRHRDQRAGAGPETR
DDGGHHGHHSHAKDQEGSRGGEGRSERPRSREGGRRRRSSPEVGGGGGGGGGVTGDREHR
HHRSHRQPRGGAGPGGGRAERRPRQKDGDRPSRGDGRANGKRRSHRTHGSSSQSVDGEPA
ARREKTQRSGDSEGESLACPPQQGSGGGSWPPGQPEDSDNHRNIKRTGSPSSAGDAPFTQ
MNSADGDPAVLNEGGAKPILPYSSMFIFGQTNPVRRLCHYIVTLRYFEMSILVVISMSSI
ALAAEDPVWTNAPRNNVLRYLDYVFTGVFTFELVIKMVDLGLLLHPGAYFRDLWNILDFI
VVSGALVAFAFSSFMGPQPGVTRGTKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFDC
VVNSLTNVLNILIVYILFMFIFAVIAVQLFKGKFFYCTDESKGLEKDCKGQFLNYDQDEV
SAMPREWKKYEFHYDNVLWAFLTLFTVSTGEGWPTVLKHSVDATFEDMGPSPGYRIEMSI
FYVVYFVVFPFFFVNIFVALIIITFQEQGDKALCSLEKNERACIDFAISARPLTRYMPQN
TQSFQYRMWKFVVSPPFEYSIMLMIALNTVVLMMKFHGAPDFYEAMLKNLNIVFTTLFSL
ECVLKIIAFGPLNYLKDAWNVFDFVTVLGSITDILVTEINTDRLLNLSFLRLFRAARLIK
LLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALNEDTAITHHNN
FRTFLQALMLLFRSATGEAWHEIMLSCLSHRACDERSGSEGKECGSDFAYFYFVSFIFLC
SFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRIKYLDMYQMLLH
MTPPLGLGKKCPPRVAYKRLVKMNMPIADDNSVHFTSTLMALIRTALEIKLASGMVAQRI
SDAVLRKELSGVWPSLSQRTMDLLVTPHTANELTVGKVYAALMIYDYYKQNRAKRQQQQG
GAASQGRLGALFKPLLPLTHMQGGDLPGGLQPRGHARSQPPTRPSSISLHNGGLLPGHEH
NIKTSSSCGMEKPKEAAQAKTKRTTSRGPSEDPPDPPLIQDSVEMRKMETSSSSTIPVPD
LALENQGRAASMPRLNAELQAVPEASPMRRSASTVAPQRPPELNLRSYILEKPSQDQPHH
HHHHHHHHHLHHCHHQRDRDRERRQRSLETPLGGPVPGAAAGEAASDPVAPEPGAKADRE
RYYSATTTGRRSGPRGREGLTLTHRQQAGGRAWRGGPDQVLDQGSGCSSSPRRGRRQPPP
PPPSPRPGPTSEAAXPLPVHVASGRPSRGASERVALRPGARHPPPAASTVRALPLGSGAA
RARGGEAPGRLSGSLRDQLDVFQDAAAPGRSTRTALPRMMGALRPAAQPAPAGTNGFHFG
GTGLRAHVCCQEAEEAEWC
NT seq
5820 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcgcccctcgctgccaacgacgcttcagggaacacgtggaactggctgtacttc
ctccccctcatcatcatcggctccttcttcatgctgaacctggtgctgggtgtgctgtca
ggggagtttgccaaggagagggagcgggtggagaagagacaagagttcctgaagctccgc
agacagcagcagatagaacgagagctgacggggtacctggagtggatctgcaaagcagag
gaggtgatgctggcggaggaagacgaggaggcagagcagcagtctctggacggagcgtgg
tacaagaggaggcacaacgctgtgctgaaaagagccaaaaagagtaagaacgacctcatc
aacgccgaagagggcgaggaccacttcactgacatctctggtgtgtgtgtgtgcccccca
ggtcgggccggcctgaggaaggagagctcgtcgctcctcaggaggaaggagaggaggctt
cgcttcaccgtccgccggctggtgaagtcccagagcttctactggacggtgctgtgtgtg
gtgggcctcaacacgctgtgcgtggccatcgtgcactacgaccagcccgcctggctgacc
tttgccctctacctcgccgagttcgtcttcctgggcctcttcctggccgagatgtccatc
aagatgtacggcatcggagcgcagagctacttccactcctccttcaactgcttcgacttc
ggggtgatcgtcggcagcgtgttcgaggtgatctgggccaccatcaaacccgaagcctcc
ttcgggatcagcgtcctgcgagcgctgaggctgctgcgcatcttcaaggtcaccaagtac
tggaactctctgaggaacctggtcgtctctcttctcaactccatgaagtccatcatcagc
ctgctgttcctcctcttcctcttcatcgtggtcttcgctcttctgggcatgcagctgttc
ggtggccaatttaactttgaagacgaaacgccgacgaccaacttcgacacgttccccgca
gccatcctcaccgtgttccagatcctgacgggggaggactggaacgccgtgatgtaccat
gggatcgaggcccagggcggcgtccgcagggggatgttctcctccatttacttcatcgtc
ctcactctctttggaaactacacgctcctcaacgtcttcttggccatcgccgtggacaac
ctggccaacgcccaggagctcaccaaggatgaagaggagcaagaggaggccatcaataag
aagctcgccctgcagaaggtcaaagaggtcaaagaggtcaaggaggtcaaggaggtcagc
cccgtgtcggcctccaacatttccgtctcagcaaaagaggagcagcgctctgggaggagc
ctgtcggtgtgggagcagagggccggccagctgaggaggcagaaccgggccagctgcgag
gtcctgtacagcgagctggagctggaggagcgtctccacctgaagacccacctggaccgg
ccgctggaggtccggccccgagacggccaccggcaccaccgccacaaggccgccgcccct
cccccccccgccgcgcctcgccaccgcgaccagcgggccggagccgggccggagacgcgt
gatgacggcggccatcacggccaccacagccacgccaaagaccaggaaggcagccggggg
ggggaggggaggagcgagaggccccgcagccgggagggaggcaggagacgcaggagctcg
ccggaggtcggcgggggaggggggggagggggaggagtcacgggggacagagagcatcgg
catcatcgctcacaccggcagcccagagggggcgccgggcccggggggggccgggcggag
cggaggccccgccagaaagatggagatcggccttccagaggagacggccgagccaacggg
aagaggaggagccatcggacccacgggtccagcagccaatcggtggatggagagccggcc
gccagaagagagaagacccaaaggtcgggtgactcggagggggagagcctggcctgcccc
ccccagcagggctccggggggggcagctggcctcctggccaaccagaagactcagacaac
cacaggaacatcaagaggaccggctccccctcctccgccggagacgcccccttcactcaa
atgaacagtgctgacggtgacccggcggtcctgaatgagggcggagccaaacccatcctg
ccctacagctccatgttcatctttggacagaccaatccggtgaggcgcttatgtcactac
atcgtgactctgcgttactttgagatgtccatcctggtggtcatctccatgagcagcatc
gctctggctgcagaggaccccgtgtggaccaacgcgcctcgcaacaacgtgctccgctac
ctggactacgtcttcacgggcgtgttcacctttgagctggtgatcaagatggtggacctc
gggctgctgctccaccctggcgcctacttcagggacctgtggaacatcctggacttcata
gtggtcagtggggcgctggtggcttttgcattttcgagcttcatggggccgcagccaggt
gtgaccagggggaccaaaggcaaagacatcaacaccatcaagtccctgagggtcctcaga
gtcctccgtcccctcaaaaccatcaaacgtctgccgaaactcaaggcggtgttcgactgc
gtggtcaactctctaaccaacgtgctgaacatcctcattgtttacatcctcttcatgttc
atctttgccgtcatcgcggttcagctcttcaaggggaagttcttctactgcacagacgag
tccaagggcctcgagaaggactgcaaagggcagttcctcaactacgaccaggacgaggtg
tccgccatgccgagagagtggaagaagtacgagttccattatgacaacgtgctctgggcc
ttcctgaccctcttcaccgtctccactggcgagggatggccaaccgtcttgaagcactct
gtggacgccaccttcgaagacatgggtcccagcccgggctaccggatagagatgtccatc
ttctacgtcgtctactttgtggtcttccctttcttttttgtgaacatcttcgtggctctc
atcatcatcaccttccaggagcagggagacaaggccttgtgcagcttggagaagaacgag
agggcttgtatcgactttgccatcagcgccagacctctgacccgctacatgccccagaac
acgcagtccttccagtacaggatgtggaagttcgtggtctcgcctccattcgagtactcc
atcatgctcatgatcgctctcaacaccgtcgtcctcatgatgaagttccacggagctcca
gacttctacgaggcgatgctgaagaacctcaacatcgtcttcaccacgctcttctctctg
gaatgcgtcctcaagatcatcgcttttggtcccttgaactacttgaaggacgcctggaac
gtgtttgactttgtcaccgtgctgggcagcatcaccgacatcctggtcacggaaatcaac
actgaccggctgctaaacctcagcttcctgaggctgttcagagccgctcggctcatcaag
ctgctgcgacagggctacaccatccgcatcctgctgtggaccttcgtccagtccttcaag
gccctcccttatgtttgcctcctgattgctatgctgttctttatctatgccatcattggg
atgcaggtgtttggtaacatcgcgctgaatgaagacacggccatcacgcaccacaacaac
ttccggactttcctccaggcgctcatgctgctcttcaggagtgccactggcgaggcgtgg
catgagatcatgttgtcctgcctgagccaccgagcgtgtgacgagcgctcggggtccgaa
ggcaaagagtgcggcagtgacttcgcctacttctacttcgtctccttcatcttcctctgc
tcctttctgatgctgaacctgtttgtggcggtcataatggataactttgagtacctaacc
agagactcctccatcctgggacctcatcacctggatgagttcatccgggtttgggccgag
tacgacccggctgcatgtggccgtatcaagtacctcgatatgtatcagatgctgctccac
atgaccccacccttaggtttggggaagaaatgtccaccaagagtcgcctacaagcgcctc
gtcaagatgaacatgcccatcgccgacgacaacagcgtccacttcacctccaccctgatg
gccctgatccgcaccgccctggagatcaaactggcctcaggcatggtggcgcagcgcatc
tcggacgccgtgctgaggaaggagttgtccggcgtgtggcccagcctgtcccagaggacc
atggacctgttggtgacgccacatacagccaatgagctgacggtggggaaggtctacgcc
gccctgatgatctacgactactacaagcagaaccgagccaagaggcagcagcagcagggc
ggggcagcctcccagggccggctcggggctctgtttaagccactgctgcctctgactcac
atgcagggcggcgacctgcccggaggcctccagcccaggggccacgcccggtcccagcct
ccgaccagacccagctccatctccctccacaacggaggcctgctgccaggacatgaacac
aacatcaagacatcgtcttcctgtgggatggagaagcccaaagaggcggcccaagccaag
accaagagaaccacgtccagaggcccatcagaggaccccccggacccccccctcattcag
gactcggtggagatgaggaagatggagaccagttccagcagcaccatcccagtcccggac
ttggctctggagaaccagggcagagcggcgtccatgcctcgcctcaatgctgagctgcag
gccgtccctgaggccagcccgatgaggcgctcggcctccactgtggccccacagcgcccc
ccggagctcaacctgaggagctacatcctggagaaacccagccaggaccagccccaccac
caccaccaccaccaccaccaccaccacctccaccactgccaccatcagcgggaccgggac
cgggagaggaggcagaggtctctggagacccctctggggggccccgtccctggcgctgcc
gcaggagaggcggcgtctgacccggttgccccggagccgggggccaaggccgaccgcgag
cgctactactcggcgaccacgacgggcaggcggagcggcccccggggccgcgagggcctc
acactgacgcatcggcaacaagcaggtgggagggcctggagaggagggccagaccaggtc
ctagaccagggcagtggttgttccagctctccgaggcgaggacgccggcagccccccccg
ccccccccctccccgcggcccgggccgacctctgaggccgccncccccctccccgtgcat
gttgcgtccggccggccgagccgcggcgcgtcggagcgcgtcgcccttcggcccggcgcc
cgccaccccccgcccgccgcctcaaccgtccgagcccttccgctggggtcaggggcggcg
agggcccgtggcggcgaggccccgggccgcctctccggcagcctcagggaccagctggac
gtctttcaggacgcggcggcgcccggccgctcgactcggaccgcactgcctcgcatgatg
ggcgccctgcggcccgccgcgcagccggcccccgcggggaccaacgggttccactttggg
ggaaccggcctcagggcccacgtgtgctgccaggaggcagaagaggctgaatggtgctag
DBGET
integrated database retrieval system
