Pseudoliparis swirei (Mariana hadal snailfish): 130196411
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Entry
130196411 CDS
T09868
Name
(RefSeq) nipped-B-like protein A isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
130196411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130196411
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
130196411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
HEAT
Cnd1
TOR1L1_N
Cnd3
Motif
Other DBs
NCBI-GeneID:
130196411
NCBI-ProteinID:
XP_056274484
LinkDB
All DBs
Position
7:20760114..20788835
Genome browser
AA seq
2535 aa
AA seq
DB search
MNGDMPHVPITTLAGIASLTDLLNQLPLPSPLPATTTKSLLYNGRIAEEVTCLLGCRDEN
LASQLAHGLNQVSTEHIELKDNLGSDEPEGDAPLLLQTMLARNPGIFREKNVMQQPMVPT
YKITQNSLHSPAQPANFQPAAMSPNPPSRFVAPQTGSSSRYMGQNSPVPSPYTPQSPTPG
YIQPYPHQQPPSYNQHQQIQQVSVASPMGPGGIRNIHEGKVSGQMANAANHLSDRHGTED
YMNIVHRLGNEEGDSAMRNPSFSLRSPQSGCSPAGSEGTPKSGSRPPLILQSPPPYAPSP
REGGPAQNLQLQQRKKGPAVKEEKDLYDIVSSPNKDSSKLTLKLSRVKSNESDTPGDTLP
GMDENSDNMEAELGFQQVPVLQQNLARLQQQQACGASGLQPPSSPYDEAELDALAEIERI
EREAASEKCSKEVQDKDKPLKKRKQDSFPLEPGAGGPGGPTGAPGSGSTGGGNAGKLTPQ
EATAAGNGASRPPLMVSIDLQQAGRADGQLDPCLAAPMPALEAQRWPEEPASGPAAVEGS
DTALRLKPDGRPEVIKNRVDQHDSRRDGRESSQHRHDEKSSDRRGEMPKSSNRGDHGRDR
DREADKDRRHRSETGGRDRRSPDSRCRSDRDRYRAPSTGEPGRSGSRHDGSKPAASASGA
KLPDCFPAQLLGGHSGALKNFQIPKIKRDKDDSGPNESQMWGQPKVKLERLGLVQDFEKR
PKPVVVLKKLSVDQIQRIIRHSKSGKNRISSVRSSKASGGMDPDVLKELPPELLAEIEST
MPLCERVKVNKRKRSTVNEKPKYAEVSSDEDYDANGESAKKRQRRDKDRSWDVEERDRRG
SGEHRKSGNRDSRRGSGSRYRDSSDEHSPPPSMTEIARKMKIKEKQKKRKAYEPKLTQEE
LMDSSTFKRFLNSIDNILENLEDLDFTAIAAQDDDEIPQEFLLGKHQLSELGSESAKIKA
MGISSRIPSEKLVKLLNILEKNILDGSKLSTMMSHDHDAEDEEKLWRDLIMERVTQSADA
CLTALHIMTSGHMPKAVYIEDVIERVLQYTKFHLQNTLYPQYDPVYRVDHGGGLLSSRAK
RAKCSTHKQRVIVMLYNKVCDIVSNIAELLEIQLLTDTTILQVSSMGITPFFVENVSELQ
LCAIKLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDQDGEPLYIQMVT
ALVLQLIQCVVHLPYDKDIFDEYESKVDQDVLITNSYETAMRTAQNFLSVFLKKCGSKQA
EEDYRPLFENFVQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKQTEMALRVASLDYLG
TVAARLRKDGVTSKMDQRSIDRILQESQGSDETQKLQKALLDYMEENAETDASLVFARKF
YVAQWFRDATTEAEKSMRNQNSKDDDSSDGPQHAKEMEATGDILQRAEKRKKFLRNIIKA
TPAHFATLKMNSDTVDYEDSCLIVRYLASMRPFAQSFDIYLTQILRVLGESAIAVRTKAM
KCLSEVVAVDPSILARSDMQRGVHGRLMDNSTSVREAAVELLGKFVLSRPQLTEQYYDML
IERILDTGISVRKRVIKILRDICLEQPTFNKITEMCVRMIRRVNDEEGIKKLVNETFQKL
WFTPTLNQDKETMTRKILNITDVVAACRDTGYDWFEQLLSNLLKSEEDASYKPAKKACIQ
LVDNLVEHILKYEETLSENKGVNSTRLVACITTLYLFSKIRAQLMVKHAMTMQPYLTTKC
NTANDFMVICNVAKILELVVPLMEHPSETYLATIEEDLMKLIIKYGMTVVQHCVSCLGAV
VNKVTHNYKFVWACFNRFYGALNKLKVQHHEDPNSTTLVANKPFLLRSLFTVGALARHFD
FDLEKFKGTNKVVIKEKVLELLVYFTKHEDEEVKTKAIIGLGFLVIMHPSQMFMPEVKTL
YNGILADRASSINLKIQVLKNLQTYLQEEDTRMQAADREWKKLSKQEDLKEMGDISSGMS
SSIMQLYLKQVLEVFFHTQASVRHFALNVIALTLNQGLIHPVQCVPYLIAMATDPELSMR
NKSDQQLVEIDKKYTGFIHMKAVAGMKMSYNLQQAIESSRRTIIRGFRQDETHTALCAHL
FSMIRGNRSHRRAFLISLLNLFDDSSRTEVNMLLFVADNMACFPYQSQEEPLFIMHHIDI
TLSVSGSNLLQTFKELLLKEPRRKEKKVKVWKNPSDGENEEERMNCDSPRSDGEENSDND
GVVRQPKKARQPVVDPESSESESDLDDLDLQDVEKVMRLVPDNPIGLLDFANAVQGILLL
LVLKQHLKNQYGFSDGKIQKYCPTESAKVYDKAVNKKSTVIFHPRQTIDFIANNMARATL
STEVKKRIVRQYLDFKVLMEHLDPDEDDEEGEASASANIRNKAISALLGCSGPMSGPCPR
TQAGPETDDDYSDGDERTPGSSRRSRRAGDSMNETVESMDVIALSCPKYKDRPQIARVIQ
KTSHGYSIHWMAGSYSGPWAEAKKRDGRKLVPWVDTIKESDIIYKKIALTSNHKLSNKIV
QTLRSLYAAREGGAS
NT seq
7608 nt
NT seq
+upstream
nt +downstream
nt
atgaatggggatatgcctcatgttcccatcaccactcttgctgggatcgctagcctcacc
gacttgttgaaccagctgcccctcccttcccctctccccgccaccaccactaagagcctc
ctatacaatgggaggatcgcagaggaagttacctgcctactgggctgtcgggatgagaat
ctggcctcccagctggcccatggcctcaaccaggtgtccacagagcacatagagctgaag
gacaacctgggaagcgatgagccagagggagatgcaccactgctgctgcagaccatgctg
gccaggaaccctggcatcttcagggagaaaaatgttatgcagcagccaatggtaccaacg
tacaagatcacccaaaattccttgcatagcccggcccaacctgcaaacttccagccggct
gcaatgtctcctaacccaccaagtcggtttgttgctccccagactggttccagtagtcgg
tacatgggccagaacagtccagtacccagcccctacactccccagagccctacccctggt
tacatacagccgtatccccatcaacaaccacccagctataaccaacaccaacagatacaa
caagtgtctgtggccagtcccatgggtccaggtggcatacgaaatatccacgagggcaaa
gtatcggggcagatggccaacgctgccaaccacctctcggacagacatggcacggaggac
tacatgaacattgtacaccgactgggcaatgaggagggtgactccgccatgagaaatcct
tctttctctctgaggtctccacagtccggctgctccccagcagggagtgaaggaacaccc
aaatcaggttctcgtcccccgctgattctgcagtcaccacctccctatgcgccctcaccg
agggagggaggccctgcccagaacctgcagctccagcaaaggaagaaggggcccgctgtg
aaagaggagaaagatttgtacgacatagtgagctctccaaacaaggactcttcaaaactc
accctcaaattgtccagggtcaagtcaaatgagtccgataccccaggtgatactctgccg
ggaatggacgagaactctgacaatatggaggcggaactgggctttcagcaggtgcctgtc
ctccagcaaaatctagctcggctgcaacagcagcaagcttgtggtgcgagtggtctccag
cctcccagttccccgtacgacgaggcagagttggatgccctcgctgaaattgaaaggata
gaacgagaggcggcgagtgagaagtgctccaaggaggttcaagataaagacaagccactg
aagaagagaaaacaggactcctttcccctggagccaggcgcagggggaccaggtggcccc
acaggtgccccaggcagtggatcaacaggagggggcaatgctggcaaactgaccccgcaa
gaggccaccgcagctgggaacggtgccagccgccctcccctcatggtgagcatcgacctc
cagcaggctggccgagctgatggccagctcgacccctgtctggccgcccctatgccagcc
cttgaggcccaacgctggcctgaagaaccagctagtgggccggctgcagtggagggttct
gacacggcgttgcggttgaaaccagatgggcgacccgaagtcatcaagaacagggtcgat
caacatgacagcaggagagacggtcgggagtcatcacagcaccgacacgacgagaagtcc
tctgacagacggggagagatgccaaagtcctcgaaccgaggcgatcacggacgagacagg
gaccgagaagctgacaaagataggaggcatcgaagcgagacaggcggccgagaccgacgc
tcccctgactcgcgctgtcgaagtgacagagataggtaccgggctccttccactggggag
ccgggtcggagcggcagtcggcatgatggttccaaaccggcggcctctgcctctggtgct
aaacttccagattgtttccctgctcagctccttggagggcatagtggcgcgctgaagaac
ttccagatccctaagatcaaacgtgataaggacgacagtgggccaaacgaaagtcagatg
tggggacagcccaaggttaaactggagaggctcggtttggtgcaggactttgagaaaagg
cccaagcctgtagtggttctgaaaaagctgtccgtggaccagatccagaggatcatcaga
cacagcaagtctggaaagaaccggatctcttcagtgaggtccagtaaagcttcagggggt
atggacccggatgttctgaaggagctgccaccagagttgctggccgagattgagtcaacc
atgcccctgtgtgaaagggtcaaggtgaacaagaggaaacgaagcactgtaaatgagaag
cccaaatatgctgaggtcagctcggatgaagactacgacgcaaatggagagtctgcaaag
aagcgccagcgcagagacaaagacaggtcctgggacgtggaagaaagagaccgacggggt
tcaggggaacatcggaaaagtgggaaccgggacagccgacgaggctcagggagccgctac
cgagactcctccgatgaacactcgccgccacccagcatgactgaaattgccagaaaaatg
aagataaaggagaagcagaagaaacggaaagcatatgaacccaagctcacccaggaagag
ctgatggactcgtccacattcaagaggttcttgaacagtattgacaacatactggagaat
ctggaggatctggatttcactgccattgcagcgcaagatgatgatgagatacctcaagaa
tttctgcttggcaaacaccaactgagtgaactgggcagcgagtccgccaagataaaggcc
atgggcatctccagcaggatcccgtccgagaagctggtgaaactgctgaacatactagaa
aagaatatcctggatgggtccaagctctccaccatgatgagccatgaccacgatgcggaa
gatgaggagaaactttggcgagacctgataatggagagagtcacgcagtcagcggacgcc
tgtctgacagctctgcacatcatgacctccgggcacatgccgaaggccgtctacatcgaa
gacgtcatcgagagggtgctgcaatacaccaagttccatctccagaacacactgtatcca
caatacgaccccgtctacagggtggaccatggaggtggcctgttaagctccagggcaaag
cgtgcaaagtgctccacgcacaagcagcgcgtgattgtcatgttgtacaataaagtgtgc
gacattgtcagcaacatcgcagagctcctggagatccagcttcttacagacaccaccatc
ctccaggtttcttctatgggaatcactccgttctttgtggagaatgtcagtgagctgcag
ttgtgtgccattaaactagttacagcagtgttctcgcgttatgagaagcatcgacagttg
atcttggaggagatttttacctctctggccagactgcccaccagcaagcgctctcttagg
aatttcaggctgaacagctcggaccaggatggagagccattgtacatccaaatggtgacg
gctctggtgctgcagctgatccagtgtgtggtccacctcccctacgacaaagacattttc
gacgagtacgagagcaaggtggatcaagatgtgttgataaccaactcgtatgagacggca
atgagaacagcacaaaacttcctctcagtcttcctcaaaaaatgtggcagcaagcaggca
gaagaagattaccggccattgtttgagaactttgtccaggacctgctctcgacagtaaac
aaacccgagtggcctgcagcagagctgctgctcagtctgctgggtcgactactggtccac
cagttcagtaacaagcagacggagatggctctgagagtggcatccctggactacctgggc
acggtggctgcccgcttgaggaaggatggcgtcaccagcaagatggaccagagatcaatt
gatcgaatcctgcaagagtctcaaggtagtgacgagacccagaagctgcagaaggcccta
ctggactacatggaggagaatgctgagaccgatgcctccctggtgtttgccagaaagttc
tacgttgcccagtggtttcgggacgccaccacagaagctgagaagtccatgaggaaccag
aactccaaggatgacgactcatcggacggaccccaacatgccaaggagatggaggccacg
ggcgacattctgcagcgtgccgagaagcgcaagaagttcctgcgcaacatcatcaaggcg
acgccggctcattttgccacactgaaaatgaactctgacactgtggattatgaggactcc
tgtctgattgtgcgttatttggcctccatgaggccgttcgcccagagctttgatatttat
ttaacacagatcttgcgagtccttggggagagtgccattgctgtcagaactaaagccatg
aaatgtctgtctgaggttgtggctgtggaccccagcatactggcacggtccgacatgcag
cgtggtgtccacggtcgtttgatggacaactctaccagtgtgagagaggcagctgtggag
ctgctgggcaagtttgtgctgagcagaccgcaactcaccgagcagtactatgacatgctc
atagagaggatactggacactggtatcagtgtaagaaagcgggtgatcaagatcctcaga
gacatctgtctggagcagccaaccttcaacaagattactgagatgtgtgtgaggatgatc
cgcagggtcaatgatgaggaaggtatcaagaaactggtgaatgagacattccagaagttg
tggtttactccgactctaaatcaagacaaagagaccatgaccagaaagatcctcaacatc
actgatgtggttgcggcatgtcgagacaccggctacgactggtttgagcagcttctttcg
aatcttctcaagtctgaagaggatgcgtcgtacaagccggccaagaaagcctgcattcag
ctcgtggacaatctggtggaacacatactcaaatacgaggagacgctttcggagaacaaa
ggtgtcaactcaacacggcttgtggcgtgcatcaccaccttgtacttattcagcaagatc
agggcccagctcatggtcaaacacgccatgaccatgcaaccctacctgaccaccaagtgt
aacactgccaacgacttcatggtcatctgcaacgtggcaaagatcttggagcttgtggtt
cctctgatggagcaccccagtgaaacttacctggccacgatcgaagaagacctcatgaag
ctgattatcaaatacggcatgacggtggtccagcactgtgtgagctgtcttggagctgtt
gtcaacaaagtcacgcacaactataagtttgtctgggcgtgcttcaacagattctatggt
gcacttaacaagctgaaggttcagcatcacgaggatcccaacagcaccacgttggtagca
aacaagcctttcctgctgcgatcgctcttcactgtgggagccctggcccggcattttgat
tttgacctggagaagttcaagggcacaaacaaggttgttatcaaggagaaagttctcgag
ctgctggtatacttcactaaacatgaggacgaggaggtcaagaccaaagccatcatcggc
ttaggcttccttgtgatcatgcatcccagccagatgtttatgcctgaggtgaagaccttg
tacaacggcatcctggctgacagggcctcctcaatcaacctcaaaatccaggtcctcaaa
aacctccagacgtaccttcaggaggaagacacgcggatgcaggcggcagacagagaatgg
aagaaactgtccaaacaggaggatctgaaggagatgggcgacatctcttcagggatgagc
agctccatcatgcagctgtatctgaagcaggtgctggaggtcttcttccacacccaggcc
agtgtacggcactttgctctcaacgtcatcgcgctcacactcaaccagggtctcatccat
ccggtgcagtgtgtaccctacctcattgcaatggcaacagacccggagctcagcatgagg
aacaaatctgaccagcagttggtggagattgacaagaagtacacaggattcatccatatg
aaggccgtggctgggatgaagatgtcatacaacctgcagcaggccatcgagtcgtctcgt
cggaccatcataagaggcttccgccaggacgagacgcacacggccctctgcgcccacctc
ttctcgatgatccgggggaaccggtcgcaccggagggctttcctcatctcgctgctgaac
ctcttcgatgacagttctaggacggaagtaaacatgctgctgttcgtagcagacaacatg
gcctgtttcccctaccagagccaggaggagcctcttttcatcatgcaccacatagacatc
accctgtcggtctccggtagcaaccttttgcaaaccttcaaagagcttctgctgaaggag
ccgaggcgtaaggagaagaaggtaaaggtgtggaagaacccgtcggatggagagaatgaa
gaggaaagaatgaactgcgattctcctcggagcgatggggaagaaaacagcgacaacgac
ggcgtggtacggcagcccaaaaaggccagacaacctgtggttgacccggagagctcagag
tccgaatccgatctggacgatttggatctccaggacgtggaaaaagtgatgcggctcgtc
ccggacaatcccatcgggctcttggactttgctaacgctgttcaaggcatcctgttgctg
ctggtgctcaaacagcacctgaagaaccaatatggattctctgacggtaaaattcagaag
tactgtccgacagagtcggccaaggtgtacgataaggcagtgaacaagaaaagcacagtg
atcttccacccacgacaaaccatcgacttcatcgccaacaacatggctcgcgccacgctg
tcaacggaagtgaagaagcggatcgtcagacagtacctagacttcaaggttctgatggaa
catctggacccagatgaggacgatgaggagggagaagcgtccgccagcgccaacatcaga
aacaaagccataagcgccctactggggtgctctggccccatgtcaggaccctgtccgcgc
actcaggccggcccagagaccgatgacgattatagtgacggagacgaaaggacgccaggg
tcctctcgacggtcaaggcgagcaggtgactccatgaacgagacagtggaatcgatggat
gtgattgccctgtcctgccccaaatacaaggatcggccgcaaatagcgcgcgtcatccag
aagacctcccacgggtacagcatccactggatggccggctcctactcggggccgtgggca
gaggccaagaaacgcgacggccgcaaactggtgccttgggtggacactattaaggaatcg
gacatcatttacaagaagattgccttgaccagcaaccacaaactgagcaacaaaatagtg
cagactttacgctcactgtatgcagcgcgggaaggaggagctagctaa
DBGET
integrated database retrieval system
