Pseudoliparis swirei (Mariana hadal snailfish): 130196424
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Entry
130196424 CDS
T09868
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130196424 (vps50)
Membrane trafficking [BR:
pswi04131
]
Protein recycling
Others
EARP complex
130196424 (vps50)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
130196424
NCBI-ProteinID:
XP_056274540
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Position
1:11669755..11757326
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AA seq
990 aa
AA seq
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MQKIKSLMARQGLKSPQESMADLSPVENLRIPSKEELREQREQPMDPQAEQEIMDGIEDV
CFSNDSFDMVQHELEKLPPELNLQELEEHRDKLKRQQAAVSKKVADLILEKQPAYVKELE
RVTALQTNLQLAAVICTNARRQLSVSKEGFTEASLGLLSNQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVSHYTKVQLAYTLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITVDSYIPCLTDLCKALWEVMLSYHRTMQWHEEHDQHETTPTTDG
AAAAESDQSVVDRSYVKKKLEHGLTRIWQDVQLKVKAYILGTDMSNFKYDDFIVVLDVIS
RLMQVGEEFCGSKSEVLQESIKRQSGNYFKNYHRARLEELRMFLENETWELCPVKSNFNI
AQLHEFKFMGQCRSPSISPSRLAGSSTGPAQGELSLFQQYLQEGNPFEMHEQKEEETEDV
LASNGYESDELEKSVYQDYDSDSDVPEELKQDYVDEQTGDAPLKSASRETIRSKKKSDYN
LNKAPILTNTTLNVIRLVGKYMQMMSILKPIAFDVIHCVSQLFDYYLYAVYTFFGRNDMP
APSPSLPTHGGRDGAPARVVGPACLYESSGLGLISSRLRTTLNRIQESLIDMEAVGENVP
VHSAAEDRKEKVPSPHLSQLVVLTNSGTLYGLAQRVVATESLVFLAEQFESLQSHLDTMM
PAAKKPFLQQFYSQTVSTASELRKPIYWIVAAKAIDYEQMLLLMSGVKWDIREIMSQHNV
YVDVLLQEFEQFNKRLQDVSRHVRIPLPVSNLLWEHCIRLANRTLVEGYANVKKCSNEGR
ALMQLDFQQFLMKLEKLTDLRPIPDKEFVEIYIKAYYLTENDMEQFIKNHREYSMKQLAN
LVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaaatctctgatggcgcggcagggcctgaagagcccccaggaaagcatg
gcagacctcagtcctgtggagaacctcaggatcccgagcaaggaggagttgcgggagcag
agggagcagcccatggacccccaagcggagcaggagatcatggacggcatcgaggacgtc
tgcttctctaacgactccttcgacatggtgcaacatgaactggagaaactaccacctgag
ctgaacctgcaggagctggaggaacacagggacaagctgaagagacaacaggcagcagtt
tctaaaaaggttgctgatcttattctggagaaacagccggcttatgtcaaggaactggag
cgagtgactgcgttacaaaccaacctgcagctggcagcggtcatttgcactaatgcaaga
aggcaactgagcgtgtcgaaggagggattcacagaagccagcttgggcctcttgtccaat
cagaggaggcgacagctgctgacaggcctgcttaagtcactgaggaccatcaagacactg
caaagaacagatgtgagacttagcgagatgcttgaggaggaagactatccaggtgcaatc
cagctctgtctggaatgtcaaaaggcagccagcaccttcaaacactacagctgcatcagc
gaattgaattccaaactgcaagacactctggagcaaatagaggagcagcttgacgtcgcc
ctgtcgaagacgtgtaagcactttgatgtttcgcactacaccaaagtccagctggcctac
acgctcctgggcaagacacagaccgccatggaccagctccacatgcacttcacccaggcc
atccacaacacggtgttccaagtggtgctgggatacgtggagctgtgtgccggcaacgcc
gacacaaagttccagaagatgcagtacaaggacctgtgcacacacatcaccgtggacagc
tacattccctgcctgacagatctatgcaaggcattgtgggaggtgatgcttagctaccac
cgcaccatgcagtggcacgaggagcacgaccaacacgagaccactcccactacagatggc
gccgcggcggcagagtctgatcagtcggtggtggaccgcagctacgtgaagaagaagctg
gagcatggactgacccggatttggcaggatgtccagttgaaagtgaaggcctacatcttg
gggactgacatgtctaacttcaagtacgatgatttcattgtggtgcttgacgtcatcagc
aggctgatgcaggtgggtgaggagttctgcggcagcaagtcagaggtcctgcaggagtct
atcaagcgccagagtggcaactactttaaaaactatcacagggcacgactggaagagctg
aggatgtttctggaaaatgagacatgggaactttgcccagtgaagtctaactttaacatc
gcccagctccatgagtttaagttcatgggccagtgtcgttctccgtccatttccccgagc
agactggccgggtcctcgaccggcccggctcagggggagctgtctctgtttcagcagtac
cttcaggagggaaacccctttgagatgcatgaacaaaaagaggaggagacagaggatgtg
ctggcatccaacgggtatgagtcagacgagctggagaagagtgtgtatcaagattacgac
agtgacagtgatgtccccgaggagctaaagcaggactacgttgacgagcagacgggggac
gcccccctcaagagtgcgtcccgagaaaccataagaagcaagaaaaagtcagactacaac
cttaacaaggcaccgattctcaccaacaccaccctcaacgtcatccggctggtcgggaag
tatatgcagatgatgagcattctgaagccgatcgccttcgatgtcatccactgtgtgtca
cagctcttcgactactatctgtacgctgtatacaccttctttggacgcaatgacatgcct
gccccaagcccgtctctgccaactcatggtggcagagacggggctcctgccagggtggtg
ggccctgcttgcttgtacgagtcatcgggtctgggccttatcagcagcagactgagaacc
actctgaaccggatccaggagagcctcatagacatggaggcagtgggggagaatgtaccc
gtccacagtgcagcagaggacagaaaggagaaggtgccgagcccccatctcagccaactg
gtggtgctcaccaacagtgggactctttatggactcgctcagagagtggtggccactgag
tctcttgtgtttctggccgaacagtttgaatccctccagtcccacctggacacgatgatg
cctgcagcgaagaagcccttcctgcaacagttttattcccagacggtgtctaccgccagt
gaacttcggaaaccaatttactggattgttgcagcgaaggccatcgactacgaacaaatg
ttgctcctgatgtctggcgtgaaatgggacattagggagataatgtcgcagcataatgtg
tatgtggacgtcctgttgcaggagtttgagcaatttaacaagcgcttgcaggatgtttcc
agacatgtgcgcatcccgctgcctgtgtccaacttgctgtgggagcactgcatccgcctg
gccaacaggacgctggtcgagggctacgccaatgtgaagaagtgcagcaatgagggccgg
gccctgatgcagctggacttccaacagttcctcatgaagctggagaagctgaccgacctg
cgacccattcccgataaagagtttgttgagatctacatcaaagcctattacctcactgag
aatgacatggagcagttcatcaagaatcacagggagtactccatgaagcagctcgccaac
ttggtgaacgtttgtctgggttcacatataaacaagaaggctcgccagaaactcctggcg
gccatcgatgacattgacagacccaagagatag
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