Pseudoliparis swirei (Mariana hadal snailfish): 130196432
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Entry
130196432 CDS
T09868
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130196432 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pswi03041
]
130196432 (usp39)
Spliceosome [BR:
pswi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
130196432 (usp39)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
130196432
NCBI-ProteinID:
XP_056274556
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All DBs
Position
7:complement(18678270..18684085)
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AA seq
502 aa
AA seq
DB search
MMVSLKREREAEVEDDDDEGIAAGDIGRGRVLEDRRSRHCPYLDTINRSVLDFDFEKLCS
ISLSHINVYACLICGKYFQGRGLKSHAYTHSVQFTHHVFLNLHTLKFYCLPDNYAIIDSS
LEDITYVLKPTFTQLHISGLDKQGKLYRAYDGTTYLPGIVGLNNIKSNDYANVVLQAFSN
VPPLRNYFLEEENYRGIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVVL
CSKKNFQITKQGDAVDFMTWFLNALHGALGGTKKKKSIIAKAFQGSMRIFSKKLPHPDLT
PEEKQALLVTVEYQEQMSESTFLFLTLDLPTAPLYKDEKEQLIIPQVPLFSILGKFNGNT
EKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLTE
EAQLTEKNTTYDLVANVVHDGKPTEGAYRIHILHHGTGKWYEMQDLQVTDILPQMITLSE
AYIQIWKRQETNGDDTNDHTGE
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgatggtttctctgaagcgagaaagggaggctgaagtggaggatgacgatgacgaaggc
atagctgcaggcgacatcggccgagggcgggtgctagaagacagaaggagccgccactgc
ccttacctcgacaccatcaacaggagcgtgctggactttgactttgagaaactctgctcc
atctcgctttcccacatcaacgtctatgcctgcctaatatgtgggaaatacttccaagga
agaggtttgaagtcccatgcctacactcacagtgtgcagttcacccatcacgtgttcctc
aatctgcacacgctcaagttttactgcctgcccgacaactatgcgatcattgactcttca
ctcgaagacatcacatatgtgctgaaaccaactttcacacaactgcacatctcagggctg
gacaagcagggtaaactataccgagcctacgacggtacaacctacctgccaggcattgta
gggctgaacaacattaaatccaatgactatgccaatgtggtcttgcaggccttttccaat
gtaccaccattgcgaaactacttcctggaggaggaaaactacaggggaatccgcaggcca
ccgggggacatcatgttcctcttggtgcagaggtttggagagctgatgcgtaaactgtgg
aatccaagaaacttcaaagctcatgtgtctccacatgagatgctgcaggctgtcgtgctg
tgcagcaagaagaacttccaaattaccaagcaaggagatgctgtggacttcatgacgtgg
ttcttgaatgctctgcacggtgctcttggaggcacaaagaaaaaaaaatcaatcattgca
aaagcatttcaaggctccatgcggatcttctccaagaaacttcctcacccagatttaaca
ccagaggagaaacaggcgttgcttgtgacggtggagtaccaggagcagatgtctgagtcc
accttcctgtttctaacccttgacctcccaacagctccactgtacaaggatgagaaggag
cagctcattatcccccaggtccctctcttcagcatcctgggcaagttcaatggcaacaca
gagaaggagtacaaaacctacaaagagaattttctcaaaaggttccagctgaccaaactg
cctccgtacctcatcttttgcatcaaaagattcaccaagaacaacttctttgtggaaaag
aaccccacaatcgtcaatttccccatcacgaatgtcgacctccgtgagtacttgacagaa
gaagctcaacttacagagaaaaacacaacgtatgaccttgtggccaacgtagtgcatgat
gggaaacccaccgaaggagcgtacaggatacacattctgcatcatggaactgggaagtgg
tacgagatgcaagatctgcaggtgactgacattctcccccagatgatcacgctgtcggag
gcctacatccagatctggaagagacaagagaccaacggcgacgacacaaacgaccacaca
ggggagtaa
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