Pseudoliparis swirei (Mariana hadal snailfish): 130196492
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Entry
130196492 CDS
T09868
Symbol
ercc8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03420
Nucleotide excision repair
pswi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130196492 (ercc8)
09124 Replication and repair
03420 Nucleotide excision repair
130196492 (ercc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130196492 (ercc8)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130196492 (ercc8)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
130196492 (ercc8)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
130196492 (ercc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
WD_LRWD1
Beta-prop_WDR75_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
130196492
NCBI-ProteinID:
XP_056274655
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All DBs
Position
7:27407254..27420465
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AA seq
412 aa
AA seq
DB search
MLGFLAARRAGVDDPLRLRRAESTRRVLSLTLNPDREVDRIHGNAINTIDIEVIEGRYML
SGGADGVIVVYDLENYSGKPQYTCKAVCTVGRSNRHVHKFSVETVQWYPHDTGMFVSSSF
DKTMKVWDTETLKPAEVFEFEDNVYSHHLSPIARRHSLIAVGTKDPKIQLCDLKSGSRIQ
VLQGHRAEVLSVRWSPRYEHILATASADSKVKVWDVRRASGCLFTLDQHNGDKTKAASEA
VNTAHNGRVNGLCFTADGLHLLTTGTDDRMRLWDSATGENTLVRATGENTLVNYGKVSNR
SRKRLQFAVSRGCGPELVFVPCESSVAAYAVHTGELLTTLRGHYNNVDCCEFHPDYQELY
TGGKDCNILAWIPVLRAADVEEESKSANQAAAAADPPLVNPAFRDAWSSDED
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgctggggttcctggcggcgaggcgggccggcgtggacgacccgctgcgcctgagacgt
gcagagtcgacgaggagggtcctgagtctcacgttgaatcctgacagagaggtggacaga
atccatggaaacgccatcaacaccatcgacattgaagtaatagaaggcagatacatgttg
tccggcggagcggacggagtgatcgtcgtctacgacctggagaactacagcgggaaacca
cagtacacctgcaaggcagtttgcacagtcggcaggtcaaatcggcacgtccacaagttc
agcgtggagacggtgcagtggtatcctcatgacacgggcatgttcgtgtccagttccttc
gacaagaccatgaaagtctgggacaccgagactctgaagcccgccgaagtgtttgagttc
gaggacaacgtctacagccaccacctgtcccccatcgccaggaggcacagtctcatcgca
gttggcaccaaagaccctaaaatccagctgtgtgacctgaagtctgggtcacggattcag
gttcttcaaggtcaccgggcggaggtcctgtctgtgcggtggtcgcccagatacgagcac
atcttagcaaccgccagtgcagacagcaaggtgaaggtgtgggatgtgcggcgggcctct
ggctgcctcttcactctggatcagcacaacggagacaaaaccaaagccgcctctgaagcc
gtgaacacggctcataacggccgagtgaacggcctctgcttcacggccgacggcctccac
ctcctcaccacggggaccgacgaccgcatgagactgtgggatagtgctactggggagaac
acactggtgagggctactggggagaacacactggtaaactacgggaaggtgtccaacagg
agtcgcaagcggctccagttcgccgtgtcgcgcggctgcggcccggagttggtgttcgtg
ccgtgcgagagctcggtggccgcgtacgccgtccacacgggggagctgctcacgacgctc
cgggggcactacaacaacgtcgactgctgcgagttccacccggactaccaggagctgtac
actggaggtaaagactgtaatatcctggcgtggattcctgtcctgcgtgccgcagacgtg
gaggaagagtcaaaaagtgcaaatcaggccgccgcagctgcagacccgcccttggtgaac
ccggcctttcgggacgcgtggagcagcgatgaagattga
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