Pseudoliparis swirei (Mariana hadal snailfish): 130196530
Help
Entry
130196530 CDS
T09868
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37 isoform X1
KO
K12600
superkiller protein 3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130196530 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130196530 (skic3)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
130196530 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_16
TPR_1
TPR_14
TPR_19
TPR_17
TPR_11
TPR_8
TPR_CcmH_CycH
TPR_9
TPR_12
ANAPC3
ANAPC8
ARM_TT21_C
HAT_Syf1_CNRKL1_N
Hemopexin
TPR_15
SRX
YceG_bac
Motif
Other DBs
NCBI-GeneID:
130196530
NCBI-ProteinID:
XP_056274742
LinkDB
All DBs
Position
7:2297819..2319033
Genome browser
AA seq
1568 aa
AA seq
DB search
MSNKEVKAALKSAREAIKNKEFKDALKHCKAVLKLEKNNYNAWVFIGLAASELEHTDQAQ
TAYKKAVELEPEQLLAWQGLANLYEKTDQWDFKVELPNVYQRLVELYASSDKNKCYEIIS
KLSDIYQSDKEYLKLAKVWLQLIQLKEEEAVDKNELLQLWRQMTRLLSDCLREEERDNEI
QQHLITAFEKAMVLMDPVPGEQHMKVSADYVKCLSKLPEDESKMIAACESMLSLYPNQSY
PLEVLCSHYLKTGVQNEDAVSCFSRLLDLAPDSGLGHLGLGTKALQEGRFKDAVQDLAQG
LKRLSSSTGWCSLAEAQFKMQRYLECAESCSQGLTVCVSGDEELRVKLLKLQLQALVGSG
GDAAAERALETFSQIPDAEKDPVLGALKGRAYLNKGHVDEALKVSSELVASNPNLAQGFV
LRGLAQLAQGQQQLAEESFLKAASQSPDCGEYYFFLGRLYWDMGEETRKDRSKAHTHLLK
AAKLDPHLGCVFRYLGHYYRQVANDPSRSRGCYKKAFEMDNHDAESGAASVDLSMEQGDM
DTALAILQSVIEKATPGSAKWAWMRRGLYYLKIGEHQQAVSDLQAALRADPEDWVCWECL
GEAYLNRRSFTAALKAFGKAQQLQPSSIYSVYQAAAIKQTLGKFREAVAEYLQITAQQDY
VPALKGLGECQLSLAKGLMEDCRDKGAIELIQQAIQNLFRAVEMRPDMSCLWKLLGDACT
AVCTVTPNSARVLVPAPLAGLDPNTQNHTLNQAQTLKVGERCYVRALKLMPEVPSLWNDL
GLNYYRQSSLSRFTEDDQTSPSLLLEKAQQCLQKAIIMDSENHSYWNALGGISMSKGLAN
FALAQHCFIKSIHVEPNNVIAWTNLGTLYLKNGNIELAHKAFKIAQSLEPLYVNCWIGQA
LIAERVGSYDTMDLFRHTTELSTHMEGVKGYAYWVCSTLLDKSNRDSELYRYNIVQMNAI
SAAQVSLSKYTERIQSDPDAFIMLGFLNEHLQLKRQAATAYERAVDLLKSMSLTEELAFA
LGSYGRALCTLGQSEEAVRVYKSTPLQELSDLAGLALASCRAGLIPESINAYERALAVAS
TEKEKAYILTALALLQHRQGNLDSAKTLLFKCSMLKEPISESLLCLCALGLVHSDATLAA
AALTELLKQGSASVNVTEQRCLLTCALLALQGNYSAVQREASRAVHSNPGNPSLWALLSR
LVPQYYPKKANGGAMAGHVACLSSMTQGKRALLYSGVNQLASGRHSGEDRHRNALKTMQR
AVLLCPDDPATWAGLMAACHTENTSCYLSGSAPSRRGLEQTLMSVVSEKVHHVEEMERPL
AQALEGWVLKQAVTGLMSGGQLEQAEALCSQVLNVSPEHPAVMLSLRQVQCQRLLLAGPG
TALPDPVLEQLHNTVMLNPTNIGAWHWLAEVFRSQGLLVQAVMAYRQSLQLASQLGLHSS
QVASLLRLALLALGNRLAGVPGNEWTDMIREATTEVLKLGSCPMALLFQALLHYVTKMTA
RETRRLLERLVYAQDYPVTVEQVSSWYLLRHLHAKNDEELINVLLQHAKMKGDARLLEFH
SLLASSSS
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaataaagaagtgaaagcggcactgaaaagtgccagagaggccataaaaaacaaa
gagttcaaagacgcgctgaaacactgcaaggctgttttgaaacttgagaagaacaattat
aatgcatgggtattcatcggcctggcagccagtgaactggagcacacggatcaggcacag
actgcctataaaaaagccgtggagctggagcctgagcagctgctggcatggcagggtttg
gcaaatctttatgagaagacggatcagtgggactttaaagttgagctgcccaacgtctac
cagaggcttgtcgagctgtacgcaagctctgacaaaaataaatgttatgagatcatcagt
aagctgtcggatatctatcagtctgacaaagaatatttaaagttggcaaaggtttggctg
cagctcattcagctgaaggaggaagaggctgtggacaagaacgagttactgcagctctgg
cggcagatgacccgactcctctcagactgccttcgtgaggaagagcgggacaatgaaatt
caacagcatttaatcacagcgtttgagaaggccatggttctcatggatcctgtaccagga
gagcaacacatgaaggtctccgctgattatgtcaaatgtctttcgaaactgcctgaagat
gaatccaaaatgatagcggcgtgtgagtccatgctgtccctctaccccaaccaaagctat
cctcttgaagtcctttgttctcactacctcaaaacgggtgttcagaatgaggatgcagtc
agctgtttctcccgactccttgacctggcccctgacagtggactcggtcacttgggtctg
ggcaccaaagcgctgcaagaagggaggtttaaagatgccgttcaggaccttgcacaaggt
ttgaagagattgagctccagtacgggatggtgcagtctggctgaagctcagtttaaaatg
cagagatacttagagtgtgccgagtcatgctcccaaggtctgaccgtctgtgtgtccgga
gacgaggagctgagggtcaaactgctgaagctgcagttgcaggctttagtcgggagtggg
ggagacgcggctgcagaacgggctttggagacattctcacagatcccagatgctgaaaaa
gacccagttttaggagcccttaaaggacgagcgtaccttaacaagggacacgttgatgaa
gcacttaaggtgtcatcagagctggtggcctctaaccctaatctggcccaggggtttgta
ctgagaggactggcacaattggctcagggccagcagcagctggcagaggagagcttccta
aaggcagctagccagagcccagactgtggagagtattatttctttctgggacgactctac
tgggacatgggagaagagacccgaaaagacagaagtaaagcccatacacatttgctcaag
gctgcaaagttggacccacacctcggttgtgtattccgctacctcggacattactaccgc
caggtggccaacgatcccagccgctcacgaggatgctataagaaggcttttgagatggac
aaccatgacgcggagtctggagctgcctcagtggatctcagcatggagcagggcgacatg
gacactgctttagcaatacttcagtcagtgattgagaaagccacaccgggctcggctaaa
tgggcttggatgaggcgggggctgtactacctaaagatcggagagcatcaacaagctgta
tccgatctgcaggcagccctgagagcagatccagaggactgggtgtgttgggagtgttta
ggtgaggcctacttaaaccgccggagtttcacagccgccctgaaggcctttggaaaggcc
caacagcttcaaccctcctccatctacagcgtctaccaggctgctgcgatcaaacagacc
ctgggcaagtttagagaggctgttgcagaatacttgcagatcacagcgcagcaggactac
gtgcccgcccttaaaggtctcggagagtgccagctgtctctggcaaaaggtttaatggaa
gactgcagagataaaggagccattgaacttattcaacaagccatacagaacctcttccga
gctgtggagatgcgtccagacatgtcctgtttgtggaagctgctgggagatgcttgcacc
gcagtctgcactgtgacgccaaacagcgctcgcgttttagtgccagccccactggctggt
ttagaccccaacacccagaaccacacactgaaccaggcccagacactcaaagtcggcgag
aggtgttatgttcgggctttgaagctgatgccggaggtccccagcctttggaatgaccta
gggctcaactattatcgtcagtccagcctatcccgcttcacagaggatgaccagacctct
ccatcgctgctcctggagaaggcccagcagtgtttacaaaaagctatcattatggacagt
gagaaccatagctactggaatgccttgggagggatttccatgagcaaaggtcttgcgaac
tttgctctggctcaacattgcttcatcaagtccatacacgtcgaaccaaacaatgtcatt
gcttggaccaaccttggtaccctgtatttgaagaacggcaatatcgagcttgcacacaaa
gccttcaagattgcccagtcgctggagccgctctatgtcaactgctggatcggacaggcg
ctgatagcagagagagtgggcagctacgacaccatggatcttttcaggcacaccactgaa
ctcagcacacatatggagggagtgaaaggttatgcctactgggtttgctccaccctgctg
gataagagcaacagagactctgagctgtaccgctacaacatagtccagatgaacgccatc
tccgctgctcaggtgtcactcagcaagtacacagagaggatccagtccgaccctgatgcc
ttcatcatgctcggcttcctaaatgagcatctgcagctgaagaggcaggccgccacggct
tacgaaagagctgttgacctgctcaaatccatgtccttgaccgaggagctggcctttgct
ctgggcagctatggacgtgctttgtgcaccttgggtcagtcagaggaggcagtgcgtgtt
tataagtccactcccctgcaggagctcagtgatctggctgggctggcgcttgcctcctgc
agggcaggcctcatcccagagagcattaacgcctatgaacgtgccctggctgtggcttcc
actgagaaggagaaggcttacatcttgacggctctggctctgcttcagcaccggcagggc
aacctcgactcggccaagactctgctgtttaaatgctcaatgttaaaggagccaatctcc
gagtccctgctgtgcttatgtgccctggggttggtccacagtgacgctacactagccgct
gccgccctgaccgagttgctaaagcaaggttcggcctccgtgaacgtcaccgagcagcga
tgtctgctcacctgcgccttgctcgccctgcagggcaactacagcgcggtgcagagagag
gcttccagagctgtacacagcaatcctggaaacccttctctctgggctctgctgtccagg
ctggtaccacagtactaccccaagaaggctaacggcggtgcgatggctggtcatgtggcc
tgtctctccagcatgacccaaggaaagagggcgctgttgtacagtggagtgaaccagctg
gctagtgggagacactctggagaggacaggcacagaaatgcactgaagacgatgcagaga
gctgtgctgctctgtcctgatgatccggcaacatgggcaggattaatggccgcctgccac
acagaaaatacttcctgttatctttcaggctctgctcctagcagacgaggactggagcaa
acactcatgtcagtggtttctgagaaagtgcatcacgtggaggagatggagcgccccctg
gcccaggctctagaaggctgggtcctgaagcaggcggtgactggcctcatgtcggggggg
cagctggagcaggccgaagccctctgctcacaggtgctgaatgtttctccagaacacccg
gcagtgatgctgtcactgaggcaggtgcagtgtcagcgcctcttgctggccgggccgggt
actgcgctcccagaccctgtgctggagcaactccacaacacggtgatgctgaaccccacc
aacatcggggcgtggcattggctggctgaggtgtttcgtagccagggcctgctggtccag
gcagtcatggcttacaggcagagtctgcagctcgcctcgcagctcggcctgcacagcagc
caggtcgccagcctgctgcgactagcgctgctcgctctaggaaaccgtctggcgggcgtc
ccaggaaatgaatggacggacatgatacgagaagccaccactgaggtcttgaagctgggt
tcatgtcccatggccctcctcttccaggccctgctccactatgtgaccaagatgaccgcc
agggaaacgaggcgtttgttggagaggctggtttacgctcaagattacccggtgacggtg
gagcaagtgtccagctggtacctcctcagacacctgcatgcgaaaaacgacgaggaacta
ataaatgtccttttgcagcatgccaaaatgaagggagatgcaaggctgctggagtttcac
tcactgcttgcctcttcttcatcctga
DBGET
integrated database retrieval system
