Pseudoliparis swirei (Mariana hadal snailfish): 130196625
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Entry
130196625 CDS
T09868
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1-like
KO
K13201
nucleolysin TIA-1/TIAR
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130196625
03041 Spliceosome [BR:
pswi03041
]
130196625
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
130196625
Spliceosome [BR:
pswi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
130196625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Calcipressin
RRM_Nup35
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
130196625
NCBI-ProteinID:
XP_056274880
LinkDB
All DBs
Position
7:complement(10380897..10392291)
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AA seq
388 aa
AA seq
DB search
MMEDDLPRTLYVGNLSRDVTEPLILQVFTQIGPCKSCKMIVDTAGNDPYCFVEFYDHKHA
SASLAAMNGRKIMGKEVKVNWATTPTSQKKDTSNHFHVFVGDLSPEITTEDVKAAFGPFG
RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK
TTYESNSKHLSFDEVVSQSSPSNCTVYCGGVSTGLTEQLMRQTFSPFGQIMEIRVFPDKG
YSFVRFNSHESAAHAIVSVNGTSIEGHIVKCYWGKETPDMMNPMQQMPLPQQNKMSFPAA
AQPYGQWGQWYGNGPQISQYVPNGWQVPTYGVYGQPWNQQGFNHLPASAGWTGMSAISNG
GVMQPTQGLNGSMLANQPGMGAAGYPTH
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggacgatctacccagaaccttgtatgtggggaatctgtccagggatgtcacc
gagcccctcatcctgcaagtcttcacacagataggaccttgcaagagttgtaaaatgata
gttgatactgctggaaatgatccatactgctttgtggagttctatgaccacaagcatgcg
tctgcctcactggcagccatgaatggaaggaaaataatgggtaaggaggtcaaagtcaac
tgggccacgacgccaaccagccagaaaaaagacacaagtaatcattttcacgtcttcgtt
ggagacctcagcccagaaataactacagaagacgtcaaagctgccttcggtccatttggc
aggatatcagatgctcgtgttgtgaaagatatggctacagggaaatctaaaggctatggc
tttgtgtctttcttcaacaaatgggacgcagagaacgccattcagcagatgggaggtcag
tggttaggaggcagacagattcgaaccaactgggccacaagaaagccccccgccccaaag
accacctatgaaagtaactccaagcacctatccttcgatgaagtagtgagtcagtccagc
ccaagtaactgcactgtgtattgtggcggagtcagcacaggactgacagagcaactgatg
agacagactttctctccctttggacaaatcatggaaatcagagttttcccagacaaaggc
tattcgtttgtgaggtttaactcccatgagtcagcagcccatgccattgtgtcagtgaac
ggcacctcaatagagggccacatagtcaaatgctactggggtaaagagaccccggacatg
atgaacccgatgcagcagatgcctctgccccagcagaacaagatgagcttccctgcggca
gcccagccctacggccagtggggccagtggtacggcaacgggccccagatcagccagtat
gtcccgaatgggtggcaggtccccacctacggtgtctacggccagccttggaaccagcag
ggcttcaatcacttaccggccagtgctgggtggactggcatgagcgccatcagtaacggt
ggggttatgcagcctacacagggattgaatgggagtatgctagccaaccagcccggtatg
ggagccgcaggataccccacacactga
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