Pseudoliparis swirei (Mariana hadal snailfish): 130196678
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Entry
130196678 CDS
T09868
Name
(RefSeq) tenascin-like isoform X1
KO
K06252
tenascin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04510
Focal adhesion
pswi04512
ECM-receptor interaction
pswi04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130196678
04518 Integrin signaling
130196678
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130196678
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130196678
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130196678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_TEN
fn3
Fibrinogen_C
EGF_Teneurin
EGF_2
EGF_Tenascin
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
DUF7949
Fn3_VIN3
Fn3_Dep-1_2nd
fn3_2
EGF
Motif
Other DBs
NCBI-GeneID:
130196678
NCBI-ProteinID:
XP_056274973
LinkDB
All DBs
Position
7:29865058..29924216
Genome browser
AA seq
1694 aa
AA seq
DB search
MGMKGFLFGCVTVALLLELSAAGLVKKVIRHRRDSLAPTKTQENLTLPHPDQPVVFNHVY
NINVPATSLCSVHLDSPGDGELKHKGGGAPMEMQNSEHIEHTLDGDNQIVFTHRINIPKQ
ACGCDNQLGIKDILSRLEMLESELSGLREQCGSGTGCCGSQVTGEVSTKPFCNGRGNWSA
DTCGCVCEPGWKGPNCTEPECPNDCQDQGRCVDGKCQCFEGFGGGDCGVELCLLDCGDYG
HCVDGSCLCEEGFVGEDCARTDCLNNCLGRGRCVDEECVCDEPWAGADCSELICPNDCYD
RGRCVNGTCYCDDGFAGEDCGAPTCAGNCNNRGVCADGRCACQSGYSGDDCSKLTCPENC
SERGHCFNGKCICDPGFEGEDCAVLSCPDGCGDRGQCVNGGCVCDVGYQGEDCSEVSCPN
NCQDRGRCVDGRCACERGFAGEDCGVKSCPKACMGRGDCVDGKCACFVGFTGEDCGGLTC
PNDCLDRGRCEDGQCVCHEGFTGEDCGEKTCPKNCLDRGYCVDGGCVCYEGFTGPDCSAL
TCPNDCRDQGHCEDGVCVCSEGFVGEDCSEVSPPKDLMVAVVTAETVDLSWRNEMRVTEY
LITYAPTSPGGLELDVRVPGDQMMATIRELEPGVEYLISVYAVLNNKRSLPVSARVATHL
PEPEGLKFKSVRETSVEVQWDPLDVAFDGWNLIFRNTKEEDGEILNALGRPETTFEQSGL
GPGQEYEVKLEVVKNNKRGPPASQNVVTMIDAPSQVHVRDVTDTTALVTWFQPVARVDGV
SVSYGLSSNPADRTVVELSLPDTQYHLGGLIPDTQYEVSLLARRGERTSVPVYQSFLTDL
DAPRDLQTVELTDESITLEWRNSRAPVENYRIKYGPLSGGEHGEMLFPPGPKDSTQAKIT
GLRPGTEYGMGVTAVTEERESLPTTTNAVTALDAPKDLTVAEVTETTMMLEWKRPLAKLD
SFRLVYVSADGHRVEDVVPGSSESHALRGLTPGTLYTVSIIAERGRRTSTPTTISAPTEE
ETPSVTNVTVSDVSWDSFLLSWSAEDGAFEAFLIEVIDAETGDECQNHTVPANARYFAVS
GLSSTTWYRASLYGVHRGALVDPVFADTITEVEPEVEALLVSDVTPESFRLAWTAEEDSF
DTFVVMVREAEGPGQPSELVLGGEESGAAFTRLAEDTEYRVKIFGLVLGRRSKSLEEWVR
TGLGSPTGIRFSDVTDTSATVHWAPPKARVDGSRVTYVPAHGGNAKTLTVDGSQSQTVLP
NLTPGVTYEVTVVAVKGQRESEPASDSVSTALDKPRGLTAINITDSEALLLWQPAIATVD
GYVITYSADSVAPVMERVSGNVVDFDMSSLTPATLYTVKVYAVRDLAKSAATTTEFTTDV
DAPQDLAAGNIQTENGMLTWKPPRADITGYILSFEAADGTIREVVLSPNAVSYNMAQLSA
STRYSVKLQAIAGPKRSSVVTTVFTTTGVLYRFPRDCSQALLNGDTISDLYTIYLGGDER
QPVQVYCDMSSDGGGWIVFLRRQSGRLEFFRNWRNYTGGFGDMNDEFWLGLSNLHKITAG
GQFELRVDLRDKGETAYAQYDKFSISEPRSRYKVHVGGYSGTAGDSMTYHHGRPFSTYDH
DNDIAVTNCALSYKGAFWYKNCHRVNLMGRYGDNSHSKGVNWFHWKGHEHSIEFAEMKIR
PSNFRNLEGRRKRS
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atggggatgaaaggcttcctctttggttgcgtcaccgtggccctgctcctcgagctctcg
gccgccggcctggtcaagaaggtcatccgccaccgtcgggattctctggcgccgacgaaa
acccaggagaacctcaccctgccccacccggaccagccggtggtgttcaaccacgtctac
aacatcaacgtccccgccacgtccctctgctccgtgcacctcgactctcccggcgacggc
gagctcaaacacaagggcggcggcgccccgatggagatgcagaactccgagcacatcgag
cacacgctggacggcgacaatcagatcgtcttcacccaccgcatcaatatccccaagcag
gcgtgcggctgcgacaaccagctgggcatcaaggacatcctgagcaggctggagatgctg
gagtccgagctgtcgggtttgagagagcagtgcggcagcgggacgggctgctgtggatct
caggttacgggtgaagtgtccacaaagcccttctgtaacggccgtggcaactggagcgcc
gacacctgcggctgcgtgtgtgaacctggatggaagggccccaactgcaccgaaccagaa
tgccccaacgactgccaggaccagggccgctgcgtggatggcaaatgccagtgcttcgag
ggcttcggcggtggcgactgcggcgtcgagctctgtctgctggactgcggcgactacggc
cactgtgtcgacgggtcctgcctctgcgaggagggcttcgtcggcgaggactgcgcccgc
accgactgcctgaacaactgcctgggacgcggccggtgcgtcgacgaggagtgcgtctgc
gacgagccgtgggcgggcgccgactgctccgaactcatctgccccaacgactgctacgac
cgcggccgctgcgtcaacggcacctgctactgcgacgacggcttcgccggagaggactgc
ggggcgcccacttgcgcgggcaactgcaacaaccgcggcgtgtgcgccgacggccggtgc
gcgtgccagagcggctacagcggagacgactgctcgaagctcacctgtcccgagaactgc
agcgagcgaggccactgcttcaacgggaagtgcatctgcgatccgggattcgagggtgaa
gattgcgccgtcctctcgtgccccgacggctgcggcgacaggggccagtgcgttaacgga
ggatgcgtatgcgatgtcgggtaccaaggcgaagactgcagcgaggtctcttgcccgaac
aattgccaagaccgcggccgatgcgtcgatggacgatgcgcgtgcgaaagaggcttcgcc
ggcgaggactgcggcgtgaagtcctgtcccaaagcctgcatgggtcgcggggactgcgtg
gacggcaagtgcgcgtgcttcgtcggcttcaccggggaagactgcggcgggctgacctgc
cccaacgactgcctggaccgcggccgctgcgaggacgggcaatgcgtttgccacgagggt
ttcaccggggaggactgcggtgagaagacgtgtcccaagaactgtctggacagaggctac
tgcgtggacggcggctgcgtgtgttacgaaggtttcaccgggccggactgctccgcgctg
acctgcccgaatgactgccgggaccaggggcactgcgaggacggagtttgcgtttgcagc
gagggctttgttggagaggactgctccgaagtctcgccacccaaggacctgatggtggcg
gtggtcactgcagagacggtggacctgtcctggaggaatgagatgcgagtgaccgagtac
ctgatcacctacgccccgacgtcccctggaggtctggagctggatgtgcgggtgcccgga
gaccagatgatggccacgattcgggagctcgagcctggcgtagagtacctgatcagcgtc
tacgctgtgctcaacaacaagaggagtcttcccgtcagcgctcgggtggcgacacatctg
cccgagcccgaggggctcaagttcaagtcggtgcgggagacgtcagtggaggtgcagtgg
gacccgctggacgtcgccttcgatggctggaacctcatcttcagaaacacaaaagaggaa
gatggcgagattctgaacgccctcggccgtccagagaccaccttcgagcagtcgggcctg
ggcccgggccaggagtatgaggtcaagctggaggtggtgaagaacaacaagcgtggaccg
ccagcctcccagaacgtcgtcacaatgatcgacgcccccagccaggtgcacgtgcgcgac
gtgacggacaccacggcgctggtgacctggtttcagcccgtggcccgggtggacggggtc
agcgtctcctacgggctcagctccaaccccgccgatcgcaccgtggtcgagctgtccttg
cccgacacccagtaccacctgggaggcctcatccccgacacccagtacgaggtgagcctg
ttggctcggaggggagagcggaccagcgtccccgtctaccagtctttcctcacagacctg
gacgcccctagagacctgcagacggtggagctgaccgacgagagcatcaccctggagtgg
aggaacagccgagccccggtggagaactaccgcatcaagtatggaccgctgtccggaggg
gagcacggggagatgctcttccccccgggacccaaggacagcacccaggccaagatcacc
ggcctgagacctggcaccgagtacgggatgggcgtgaccgcggtgacggaggagcgggag
agtctgccgacgaccaccaacgcagtgaccgccctggacgctcccaaggacctgaccgtg
gcggaggtgacggagaccaccatgatgctggagtggaaacgccccctggccaaactggac
tccttccgactggtttacgtgtcggccgacggccaccgggtggaggacgtggtcccgggc
agctccgagtcccacgccctgcggggcctgacacccggcacgctgtacaccgtcagcatc
atcgccgagaggggccgcaggaccagcacacccaccaccatctcagcacccacagaggag
gagacgccttcggtgaccaacgtcaccgtcagcgacgtgtcgtgggacagcttcctcctg
tcctggtccgccgaggacggggcgttcgaggcctttctgatcgaggtcatcgacgcagag
acgggcgacgagtgtcaaaaccacacggtgcccgccaatgctcgctacttcgccgtctct
ggcctgtcctccaccacctggtacagggccagtctgtacggggtgcacaggggggcgctc
gtagaccccgtctttgcagacacgatcacagaggtggaaccagaggtggaggctctccta
gtctccgacgtcacccccgagagctttaggctggcctggacggccgaggaggactccttc
gacaccttcgtggtgatggtcagggaggccgagggcccgggccagcccagcgagctggtg
ctgggcggcgaggagagcggcgccgccttcacccgcctcgccgaggacacggagtacaga
gtcaaaatctttggtctggttctggggagacgctccaagtctttagaggagtgggtgaga
acaggcctgggctcgcccacgggcatccgcttctccgacgtcacggacacgtcggccacc
gtccactgggcgccgcccaaggctcgggtggacggcagcagggtcacgtatgtgcccgct
catggaggtaatgcgaagacgctgacggtggacggctctcagtctcagactgtgctgccc
aacctgacccccggggtcacctatgaggtcaccgttgtggccgtcaagggtcaaagggag
agtgagcctgcatcagacagcgtcagtacagccctggataagccccgcggtctgactgcc
atcaacatcacagacagcgaagctctgctgctctggcagcccgccatcgccaccgtcgac
ggctacgtcatcacctacagtgccgactcggtggctccagtgatggagcgcgtgtctgga
aacgtggtggactttgacatgagctctctgacgccggcgacgctctacacggtgaaggtg
tacgccgtgagggacctggccaagagcgcggccacgaccaccgagttcaccaccgatgtg
gacgcccctcaggacctggcggctggtaacatccagacggagaacggcatgctgacgtgg
aagccgcctcgcgccgacatcaccggctacatcctcagcttcgaggccgcggacggcacc
atccgcgaggtggtcctcagtcccaacgccgtctcctacaacatggctcagctcagcgcc
tccacgcggtattcggtcaagctgcaggccatcgccggtcccaagagaagcagtgtcgtc
acgaccgtcttcaccaccactggcgtgctgtaccggttccccagggactgctcccaggcc
ctgctgaacggcgacaccatctcagacctgtacaccatctatctgggcggagacgagaga
cagccggtccaggtctactgcgacatgagcagcgacggaggcggatggatcgtcttcctc
cgacgacagagcggcagattggagtttttccgcaactggaggaattacacaggcggcttc
ggtgacatgaatgacgaattctggctcggtctttccaacctgcataagatcacagctgga
ggtcagttcgagctgcgagtggacctgagagataagggagaaaccgcctacgctcagtac
gacaagttctccatctctgaacctcggagccgctacaaggtccacgtgggaggatacagt
ggaacagcgggcgactcgatgacctaccaccacggccgtcccttctccacctacgaccac
gacaacgacatcgctgtcaccaactgtgccctgtcctataagggagccttctggtataag
aactgccaccgcgtcaacctcatgggacgatatggagacaacagccacagcaagggagtg
aactggttccactggaaaggccatgagcactcgatcgagttcgccgagatgaagatcagg
ccgtccaacttcaggaacctggagggaaggaggaaacggtcatag
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