Pseudoliparis swirei (Mariana hadal snailfish): 130196701
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Entry
130196701 CDS
T09868
Name
(RefSeq) LOW QUALITY PROTEIN: protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130196701
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Meiosis-specific proteins
Others
130196701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
130196701
NCBI-ProteinID:
XP_056275004
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All DBs
Position
7:complement(12315888..12331049)
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AA seq
1507 aa
AA seq
DB search
MQTFPSVRFKALDYVFETTTSLKLMMNLLALPAPYVTGTSDLYPHRGQLPEVTYRTPWIR
GKVISTCKLFVSGSVLDYLGEKSQADIPPERFKVTLSDVKGDVELIPSSNPDSLEDVDPN
EYFCLLKETRINDTCRESFFKWTADQMKHGKENQDLLLPDELILADPLPHFKRHLPTLKA
KLSRLRMLPVADPLQSSTGVTLSEDAIFRCASFEKPPDVHTRDLQTCANIHEEFGKESLM
KEESLLLPVVVDTLSLSRDNCTTFSSICDQMTVAPEQLDEQLPVLAVLRKVTFLSALPSD
GPASVDISRYQVPEEPNKKCSIKESLLDPAGRVMLPTEMELDVTLTPSAKTSQTQTWPPT
CELQKEEEISLLIVLSHEXLSRRSLVSARAQQEMETALWKAEKHLTSVVGFLLAEPQMCE
PAVDFHPLSEAWKVIKSENRSSVVIVGGRPQSGNETAAPPVYLCGNREFTESMRPEFPPA
TEEKMEDFKKLSPEHVEITSVLMKPTNETPSPRPKKRETDAFPAEATSAATRLQEETDAD
AYQNASLMHTANANHKAVKPAPLLFSHSAATTTRDGVSEGRFLEDPGVVSARKTEQSAGS
AAHRHRCPQFMRRPPEEELNPLATFMLLRSRHTAPATEASQSSTPAPNTDQPSTPSEHRQ
PPPAQMQRSDQRSTYMSSAMSANATREQNAAGQATGTILPAARQAVPQNRQDSRVIQVQA
TDSQQRAHSELLAFAQPRLRAARQLGLNFPVRGDFSCLAPDQTHFLLKQQEKALCRTHAQ
SAERVGDQELLFNQAALIHVLVTFKEVLLKCDLGTALEYLTTAAEACAEQSLEPLVKRLQ
IVLYLSHKSQEANLKLLELQALLASRLHGRTGQNNTEKILVIISVDSDDIRSLIISSLSR
VAGAAVTAVCPEGDKKKLNGASVVSSVCDSACVVVYEQHVGPDFPWSCFSLVVEYDHPGH
SPWATVCRERSIGHLAFSTTLPDAEAPWSLEDAVPYVLFVTEGLLNCPLLLQTLESDFDI
TMMERSHCPALQMLGGTQHYAAITVDESTVIIIQEEDELCEVRASERVVMRLTALSLQYN
NCWLILHCRDSQGGGFSAEAFGNLVLVYSSLVLFGMKSEDLDIKVLIVSEVIEIAKWIRQ
ICFHSLTAGEKDRLSYLDRDWLSAIPSQEEKCLLQFPSVNPLVSQLMLRRAPSLQWLLGA
SLPQLMELLPEVPHKVLKLFSDTTSLCTRTTDRPEPPTDGPLNSPWTTAADPKGMDSDPQ
QEAPINPHPELFCSHQNSSFRFGADQSFSEPYPDSTVQEGSVDRLDLSSSFGSPDVPLQR
GWTGSDPWREEARGREEATFSGWRPRAGAVGRVVGRANDEWTQRAPSNLSIDTRGVQPES
PFTLDSTFGLSHPLQPPASGQSCTPSSVYGDLQHPGIQQGPYGLSPPTEVALWGRGGHSS
ADHLASSGETPTSSAHYGSKCGIGQERKRRGEAAGSVGTVLTPLKRGRLSYEKVPGRSDG
QTRLKLF
NT seq
4524 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccttcccctccgtccgatttaaagctctcgactatgtttttgagaccaccacc
agtctgaagctaatgatgaacctactggcgctgccagcaccttacgtcactggtaccagt
gacctgtacccacacaggggccagctgcccgaagtcacctacaggacaccgtggatcaga
ggaaaggtgatctcaacctgcaaactctttgtcagtggttcggtgctcgattacctggga
gaaaaaagccaagcagatattccaccagaaagatttaaagtgactctgagtgatgtgaaa
ggggatgtggagctgatacccagctctaatcctgactcactggaggatgtagacccaaat
gagtatttctgccttttaaaagagacacggatcaatgacacgtgtcgggaatcatttttt
aagtggacagctgaccagatgaaacatggaaaggaaaaccaagatctcctcctgccagac
gagctcatccttgccgatcccctgccacactttaagagacatttacccacgctgaaggcc
aagctgtccaggctgaggatgcttcctgtggccgaccctctgcagagctcaacgggagtt
accctctctgaggacgccatattcaggtgtgcgtcttttgaaaaacctcctgacgtgcac
accagggacctccagacgtgtgcaaacattcacgaggagtttggtaaagagtcactaatg
aaagaagagtctcttttgcttcccgtggtggtggacacactgagtttgagccgagacaac
tgcaccaccttctcaagcatctgtgatcagatgaccgttgctcctgaacagctggatgag
caactcccagtcctggctgtgcttcgtaaagtcacatttctctcggctctcccgtcagat
ggaccagcatcggttgacatttcacgataccaagtaccagaggagcccaacaagaaatgc
agcatcaaggaaagcttgttggatccggcaggacgcgtgatgcttccaactgaaatggag
ctggacgtgactttgaccccgagtgccaagaccagccaaacccaaacatggccgcccacc
tgtgaactccagaaggaagaggagatatcacttctaattgtcttgtcacacgaatgattg
tcacgtagatctctggtgtcagcaagagctcagcaagagatggagacggcactttggaaa
gcggagaagcatctaacctccgtggtgggcttcctgttggcagagcctcaaatgtgcgag
ccggctgtcgacttccatccgctgtctgaagcctggaaagtcataaagtccgagaatcgg
agctcggtcgtcatcgtcggtggcagaccgcagtcggggaatgagaccgcggccccgcct
gtgtatttgtgcggcaacagagagttcacagagagcatgaggcccgagttcccccccgcc
acagaggaaaagatggaggacttcaaaaaactgtcccctgaacacgtggagatcacatcc
gttctgatgaagcccacaaacgaaactccgtcgcctcgcccgaagaaacgtgaaacggac
gcttttcctgctgaagcgacctccgccgccacccgtcttcaagaggaaaccgatgccgat
gcgtaccagaacgcctccctgatgcacaccgccaacgcaaaccacaaggcggtaaaaccg
gcgcccttattattttctcactctgctgccaccaccaccagagatggggtttcagagggg
aggtttctagaagatccaggcgtggtttctgcccgtaagaccgagcagagcgccgggtcc
gccgcacaccgtcacagatgcccgcagtttatgagacgaccaccggaggaggagctcaac
cctctggccaccttcatgctgctgagatctcggcacacggctccggctactgaagcgtct
cagagctcgactccagcaccaaacacggaccaaccaagcacaccatctgagcaccgtcag
cctccaccagcgcagatgcaaagatcagatcagaggtcgacgtatatgagcagcgccatg
tcagcaaatgctactagagagcagaacgcagccggccaggcgacgggtacgatcctccct
gcggcgcgtcaggccgtccctcagaaccgacaggacagcagagtgatacaagtccaggct
accgacagccagcagcgagcccacagtgagctgctggccttcgctcagccgcgtctgagg
gctgccaggcagctgggcctcaactttccggtacgaggagacttcagctgcctggccccg
gaccaaacgcacttcctcctcaaacagcaggagaaggcgctctgcaggacacacgcacag
agtgccgagcgggtcggagatcaggaactgcttttcaaccaggcggctctgattcacgtg
ttggtgacgtttaaggaggtgctgctgaagtgtgacctcggtactgcattggagtacttg
accacggcagcggaggcgtgtgcagagcagagtctggagccgctggtgaagaggctgcag
atcgtcctctacctcagccacaagagccaggaggcgaacctcaaactgctggagctgcag
gcgctgctggcctcgcgactgcacggcagaacgggacagaacaacacggagaaaatcctc
gtcataatatcggtggactccgacgacatcagatctctgatcatcagcagtttgagccgc
gtggctggtgcagccgtcacagcagtttgtcccgagggcgacaagaagaagctgaatggt
gccagtgtggtcagcagcgtgtgcgacagcgcgtgcgtggtggtgtacgagcagcacgtc
gggcccgacttcccctggagctgtttctctctggtggtggagtacgaccacccgggccac
tccccctgggccaccgtctgcagggagaggagcatcggtcacctcgccttcagcacgacg
ctccccgacgctgaagccccgtggtccctggaggacgcggtgccatacgtgctgtttgtc
actgagggactcctcaactgtcctctgctgctgcagacactggagtcagactttgacatc
acgatgatggagcggagccactgtccggccctacagatgctcggagggacccagcactac
gctgccatcacagtggatgaaagcaccgtcatcatcattcaggaggaggatgaattgtgt
gaggtgcgagccagtgagagagtcgtgatgaggctgaccgctctctctttgcaatacaac
aactgttggctcatcctgcactgcagagacagccagggaggagggttttccgctgaagcc
ttcggcaacttggtgttggtttactcgtctctggtgctgttcggcatgaagtctgaggat
ctcgacatcaaggtgctgattgtgtccgaggtgattgaaatagccaaatggatccgccag
atctgcttccacagcctgacggccggtgagaaggaccggctcagctacctggaccgagac
tggctgagtgcgattccttcacaggaggagaagtgtctgttgcagttcccgtctgttaac
cctctggttagtcagctgatgctgaggagagcgccgtccctccagtggctcctgggggcc
tctctgcctcagctgatggagctgctccccgaggtgccacataaagtcctcaagctgttc
agtgacaccacctccctctgcacacggaccacggaccggccagagcctccgaccgacggt
ccactcaacagcccctggaccaccgctgctgacccaaagggcatggactctgacccacag
caagaagcccccatcaatccccacccagaactattctgcagtcaccagaactccagcttc
cggttcggagccgatcaaagcttcagcgaaccgtacccggactccacggtgcaggagggc
agcgtggatagactcgacctgagttcctcctttggcagcccagatgttcccctccagagg
ggctggaccggcagtgatccgtggagggaggaggccagaggcagggaggaggcgacattt
tctggctggaggcccagagccggagcggtggggagagtagtcggaagagcaaacgacgag
tggacgcagagagctccatcgaacctcagcatcgacactcgcggagtccagccggagagt
cctttcacgctggactccacattcggtctcagccacccgctgcagccgccggccagcggt
cagagctgcactccctcttcggtctacggtgacctccaacatccaggcatccagcagggc
ccctacggcctgagcccgcccacagaggtcgcgctgtggggtcgaggaggtcacagcagc
gctgaccacctcgcgagtagcggagaaacgccgacgagttcggcgcactacggctccaaa
tgtgggataggacaagagaggaagaggaggggcgaggccgccggttcggtgggaacagtg
ttgacgccactgaagagagggaggctgagctatgagaaggtgcccggcagaagtgacgga
cagacgaggctgaagctattttag
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integrated database retrieval system
