Pseudoliparis swirei (Mariana hadal snailfish): 130196975
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Entry
130196975 CDS
T09868
Name
(RefSeq) nucleolar protein 6-like
KO
K14544
U3 small nucleolar RNA-associated protein 22
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130196975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pswi03009
]
130196975
Ribosome biogenesis [BR:
pswi03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
130196975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nrap_D4
Nrap_D5
Nrap_D2
Nrap
Nrap_D3
Nrap_D6
Motif
Other DBs
NCBI-GeneID:
130196975
NCBI-ProteinID:
XP_056275390
LinkDB
All DBs
Position
7:complement(3275201..3288854)
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AA seq
1133 aa
AA seq
DB search
MIPSESRASEEKNKAPVKAKRSKPEMSGGDEDEVYHPVKLSRSDLYRPPTAEELNQLKET
ESLFHCSLLKMQMEELLKEVALSERRKRQIDSFIQAVTKLLQTVPNSSDVELSDLSWLTS
AVKVPFLLVPNTTKGKFHMAPPASVDLIGSYPLGTCTKPRIMVDLAVTIPADVLHQKDVL
NQRYPRKRALYLAGLAQCFASSSDIGSMRYSCLHGNRLRPILLLTPPGKDSSSFTLRIHV
CPPPGFFKPSRFNPQRNNIRTEWYSGVQNSQCESGEPPTPHYNSSVLGDLLPRAHLQFLS
AVSSQCSAFADGVALLKVWLRQRELDQGTGCFNGFLASMLLAYLLTTHRISNSMTAYQLL
RNSLNFLASTDLTVNGISLARDPDSTAPSLAEFHSAFQVVFVDPSGHLNMCTDITACTYK
QLQHEATLSMQFWDNPTVDGFHSLLMTPKPMIRTSDHVFQLCELVKLQSSCKKMNLLGEL
MDHSGNYVHTALPFILSLLQRGLGQRIHLLTHSLSPDPEWSVESEAPKHKDQPPLAFGLR
FNPELAFSVLERGPAAESPKAAEFRQLWGSRSELRRFQDSSITEAVLWDGESICQKRLVP
RQIIAHLLQLHADIPESCMRYVGAMVDDVIKRGSEVPSTGDEESLLVVQSYDDLSRKLWR
LEGLPLAITAVQGAHPALRYTQVFPPVPLKVDYSFFDREKTSRSLVPMEGKPCPAYITPI
TVICHMEGSGKWPHDRLAIRHIRAAFHICLGELLKKHHQYTCRPCPTHLDVWKDGLVFRI
QVAYHREPQVLRESVNAQGLLIVRDNEEAQALEMATIHKPLLTSTLHGLQQQHQCFGGAC
RLAKRWLGAQLFSEDITEDTADLLVASLFLQPAPFTPPGSPQVGLLRFLHLLSSFDWRNN
PLVVNLNNQLAATDYTEIKNDFMASRESLPVLFLATPKDKKQSLWTKRAPSVQMLLRVVM
VAAESLKLLEHQLMDGDQIQDVRVVMRAPLDAYDVLIHLNPRQVPLLSQAVDPPIVTFNR
GLMAGNVAQSRGALPVIDYNPVTLYLAELRDAFGELALFFCDPHGGTVIAVLWKPKAFLP
VPFKTSYMSARRVEVTGEEANTIPNVEAILEDFRVLGKGLIKSVEARTEKWSV
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgattccctcagagagtcgcgcgtcggaggagaaaaacaaggctcctgtaaaagcgaaa
aggagcaaacctgagatgtctggaggggacgaggacgaggtctaccacccggtgaagctg
tcccggagtgatctgtacagacctccgacagcagaggagctaaaccagctgaaagagacg
gaaagcctgtttcactgcagcctgctcaaaatgcagatggaagagctgctgaaagaggtc
gccctgagtgagcgtaggaaacggcaaatagattccttcattcaggccgtcaccaagctg
ctccagaccgtaccgaattcctcagacgttgagttgagtgacctgtcatggctgacaagt
gcagttaaggtcccttttctcctggtgcccaacacaacaaaaggcaagttccacatggca
ccgcctgcttctgttgatctgattggcagctaccctctgggcacctgcaccaaaccacgc
atcatggtcgacctggctgtcacaatcccagctgatgtgctccaccaaaaggacgtcttg
aaccagaggtatccgaggaaaagggctctctacctggccggtctggcccagtgtttcgca
tcttcttctgacatcgggagcatgcgttactcctgtctgcatggcaacagacttcgaccc
attctgctgctcacgcctccaggtaaagactcttccagcttcaccttgcgtatccatgtc
tgtccgcctcctggattcttcaagcccagccgtttcaacccacagaggaataatatccgg
acagagtggtacagcggtgtgcagaactcccaatgtgagagcggcgagccccccactccg
cattacaatagctctgttctgggggatttactgcccagggctcacctgcagtttctttct
gcggtcagctcccagtgctcagcttttgctgatggagtggctttgctcaaagtctggctt
cgtcaaagagagctcgaccagggaactggttgttttaatggcttcctggcttcgatgttg
ttggcttaccttctgaccactcacagaatcagtaactccatgacagcctatcagctgctt
cgaaacagcttgaacttcctggcatctacagacctgacagtgaatggaattagcctggcc
agagaccctgactctacagctccatctcttgcagagttccacagtgcttttcaggttgtg
tttgttgacccgtcaggacatctcaacatgtgtactgacataactgcttgcacctacaaa
cagctgcagcacgaggcgactctatcgatgcagttctgggacaaccctacggtggatggc
ttccacagcctcctcatgacacccaaacccatgataaggacaagcgaccacgtattccag
ttatgtgagctggtgaagcttcagtccagctgcaagaaaatgaatctcctcggtgagctg
atggaccacagtggaaattatgtccacaccgcactcccttttattttgtcactgcttcag
cggggactgggccaaaggattcacctcctcacccactccctctcacctgaccctgagtgg
tctgttgagagcgaagccccaaaacacaaagatcaacctcctctggcctttggtttgcgc
ttcaatccggagctggcattctctgtcctggaacgaggcccagctgcagaaagccccaag
gcggctgagttccgtcagctgtggggttctcgctccgagctgcgtcgcttccaggacagt
tcgatcaccgaggctgtgctgtgggatggagagagcatatgccagaagaggctggtgccc
aggcagatcatcgcacacctgctacagctgcatgcagatatccccgagtcctgcatgcga
tatgtgggggcgatggtggatgacgtcatcaaaaggggaagtgaggtgcctagtactgga
gacgaggagagtttgcttgtggttcagtcctatgatgacctgagtagaaaactgtggagg
ctggaaggactgcctctcgccatcacagcagtgcaaggagcccaccctgcacttagatac
acacaggtctttccccctgtgccactgaaggtggactattccttctttgacagagaaaag
acttccagatcattggtgccaatggaaggcaaaccgtgccctgcttatatcaccccgatc
acagtgatttgccacatggaagggagtggaaagtggcctcacgatcgcctcgccatccgc
cacatccgagctgccttccacatctgcctgggagagttactcaagaagcatcatcaatat
acatgcaggccctgccccactcacctagatgtctggaaggatggcttggttttccgcatc
caggtggcctaccatcgcgagcctcaggtgctgagggagagtgtgaatgcccaggggctg
ctgatcgtgagggacaacgaggaggctcaggctctggagatggccaccattcacaagcct
ctacttaccagcacattgcatgggctccagcagcagcaccaatgtttcgggggagcgtgt
cgcctggccaagcgctggctgggggctcagctcttcagcgaggacatcacagaggacaca
gcagacctgctggtggcctcgctgttcctgcagcctgcaccctttactcctccgggttct
cctcaggtgggcttgcttcgtttccttcaccttctctcctcctttgactggaggaacaac
ccgctggtagtcaacctcaacaaccagctggcagccaccgactacacggagatcaagaac
gacttcatggcctccagggagtctctgcccgtcttgtttctagctacgcctaaagacaag
aaacaatccctctggaccaagcgagcaccgagtgtacagatgctgctgcgtgtggtgatg
gtggctgcagagagtctgaagttactggagcatcagctgatggacggagaccagatacaa
gatgtcagggtggtcatgcgcgctcctctggatgcctacgatgtgctgattcacctgaac
ccaaggcaggttcccctgctctctcaggcagtggaccctcccattgtcaccttcaacagg
ggcctcatggctggcaacgtggcccagtccagaggggccctgccggtcatcgactacaac
cccgtgaccctctacctggcagagctcagagatgctttcggagagctcgccctcttcttc
tgtgatcctcatggcggaaccgtgatcgcagttttatggaagccaaaggccttcctccca
gtgcccttcaagacatcgtatatgtctgctcggagagtggaggtgactggggaggaagcg
aataccattcccaacgtcgaagcaatcctggaggacttccgggtcttgggaaagggcttg
atcaagtcagtggaagccaggactgagaagtggtcagtttag
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