Pseudoliparis swirei (Mariana hadal snailfish): 130197166
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Entry
130197166 CDS
T09868
Symbol
top3b
Name
(RefSeq) DNA topoisomerase 3-beta-1 isoform X1
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03440
Homologous recombination
pswi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130197166 (top3b)
03460 Fanconi anemia pathway
130197166 (top3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pswi03032
]
130197166 (top3b)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130197166 (top3b)
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
130197166 (top3b)
DNA replication proteins [BR:
pswi03032
]
Eukaryotic type
DNA Topoisomerases
130197166 (top3b)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
130197166 (top3b)
FA (Fanconi anemia) pathway
130197166 (top3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Motif
Other DBs
NCBI-GeneID:
130197166
NCBI-ProteinID:
XP_056275682
LinkDB
All DBs
Position
7:30245993..30267338
Genome browser
AA seq
945 aa
AA seq
DB search
MDYFPEGIIFTHDVTNTFSWRSPRFSVDVGAAGPSAVPGDGTYTSDGDQLKVQGVAGRGE
AAGVLLEHRHPQGHGDGLQAEGRVQAPAGVAGVAAGLVDDLRHPVQVDVLPGSCTSRKGL
NGACSVHEYLGSFQGQSVRFKMTSVCGHVMSLDFIGVYNNWDKVDPAELFSKAPTEKKEA
NPKLNMVKFLQVEARGCDYVVLWLDCDKEGENICFEVLDAVQPVMNQGGARDQTVYRAKF
SSITDTDIWNAMASLGEPNRNEALAVDARQELDLRIGCAFTRFQTKYFQGKYGNLDSSLI
SFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVFRGKDSPLTLDWTRVRVFDRDVGQM
FVNLTKTSREAKVESVSKKEKAKQRPQALNTVEMLRVGSSSLGMGPQHTMQIAERLYIQG
YISYPRTETTHYPENFDLKGTLKLQASNPMWAEEVKALLSTGLNRPRKGADVGDHPPITP
MRAASEGELGSEGWRLYEYITRHFIATVSEDCKYLQTTIDFTIGKEAFSCSGKTLISPGF
TVVMPWQAIPLEEAMPVCERGDTFTVDEIKLVEKQTSPPDYLTEAELITLMEKHGIGTDA
SIPVHINNICQRNYVTVENGRKLKPTNLGVVLVHGYYKTDAELVLPTIRSAVEKQLTLIS
LGKANFQQVLQHTLDIFKRKFHYFVDSIPSMDELMEVSFSPIAASGKPMSRCGKCHRFMK
YIQTKPSRLHCSHCDETYSLPQNGAIKLYKELRCPLDDFELLLWTSGPRGKSYPLCPYCF
SNTPFRDMKKGMGCHECTHPSCQHALNALGIGQCVECEGGVLVLDPTSGPKWKMACNKCN
VVVHFFEHAHRVQVSQDSCDACDASLVAVDFNKTRSPLPAGETQHTGCVFCDPVFQDLVE
LKHATMYRGGGARRGGRGRGRGRGRRGGNIKKPKDKMAALAAYFV
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggactatttcccagaaggcatcatcttcacgcacgatgtcacaaacacgttctcttgg
cgctccccgaggttctcagtagacgttggcgccgccgggccttcagctgtgcctggagat
ggcacatatacaagcgatggtgaccagctcaaagtccagggagtagctggccgtggggaa
gcagctggggttcttcttgagcaccggcatcctcagggacacggggatggtctccaggcc
gaaggtcgtgtccaggccccggcaggagtggccggtgtggcagctggcctcgtggatgac
ctgcggcacccggttcaggtcgatgttctccctggctcgtgtacgagtcgtaaggggctg
aacggggcgtgctctgttcatgaatacttggggagcttccagggccagagtgttcgcttc
aagatgacgtcagtgtgtggtcacgtgatgagcctggacttcatcggcgtgtacaacaac
tgggacaaggtggaccctgcagagctcttcagcaaggcccccacggagaagaaggaggcc
aaccccaaactcaacatggtcaagttcctccaggtggaagccagaggctgtgactacgtg
gtgctgtggctggactgtgacaaggaaggagagaacatctgctttgaggttctggatgcc
gtccagcccgtgatgaaccagggcggcgccagggaccagacggtgtaccgcgccaagttc
agctccatcaccgacaccgacatctggaacgccatggcgtccctcggggagcccaaccgc
aacgaggcgctggcggtggacgcccggcaggagctggacctgcgcatcggctgcgccttc
acccggttccagaccaagtacttccagggtaagtacggcaacctggactcgtccctgatc
tcgttcggcccgtgccagaccccgacgctgggcttctgtgtggagcgccacgacaagatc
cagtccttcaaaccggagacgtactgggtcctgcaggccaaggtgttcagagggaaggac
agcccgctgaccctggactggacccgggtgagggtcttcgacagggacgtgggccagatg
ttcgtcaacctgaccaagacttccagggaggcgaaggtggagtctgtgagtaagaaggag
aaggccaagcagaggcctcaggccctgaacaccgtggagatgctgagggtgggcagctcc
tccttaggcatgggtccccagcacaccatgcagattgcggagcgcctgtacatccagggc
tacatcagctacccgcggactgaaactacccactacccagagaactttgacctgaagggg
accctgaagcttcaggccagcaaccccatgtgggcagaggaggtgaaggctctgctttcg
actggtttaaaccggcccaggaaaggagccgacgtcggggaccatccgcccatcactccc
atgcgtgccgcctccgaaggggagctgggaagtgaaggctggcggctgtacgaatacatc
acgcggcacttcattgccaccgtcagtgaggactgcaaatacctgcagaccaccatcgac
ttcaccatcggcaaagaggccttctcgtgtagcggcaagaccttgatctcgccaggcttc
acggtggtgatgccgtggcaggccatccctctggaggaggccatgcccgtctgtgagcgc
ggagacacgttcacggtggacgagatcaagctggtggagaagcagaccagccccccggac
tacctgacggaggcggagctcatcaccctcatggagaaacacggcattggtacagacgcc
agcatcccggtccacatcaacaacatctgccagaggaactatgtgaccgtggagaatgga
cgcaagttgaagccaaccaacctgggcgtggtcctggtgcacggttactacaagacagac
gcggagctggtgctccccaccatccgcagcgcggtggagaagcagctcaccctcatctct
ctggggaaggccaacttccagcaggtgctgcagcacacgctggacatcttcaagaggaag
ttccactacttcgtggactccatccccagcatggacgagctgatggaagtctccttctcc
cccatcgcggcctcggggaagccgatgtctcgctgtggcaagtgtcaccgcttcatgaag
tacatccagaccaagcccagccggctgcactgctcccactgtgacgagacgtacagcctc
ccccagaacggagccatcaagctgtacaaggagctgcgctgcccgctggacgacttcgag
ctgctgctgtggacgtcggggccgcggggcaagagctacccgctgtgcccgtactgcttc
agcaacacgcccttcagggacatgaagaaaggcatgggctgccatgagtgcacccacccg
tcctgccagcacgcgctcaacgcgctgggcatcgggcagtgtgtggagtgtgaggggggg
gttctggtgctggaccccacgtctggacccaagtggaagatggcgtgtaacaagtgcaac
gtggtggttcacttctttgagcacgctcaccgggttcaggtgtcccaggacagctgtgat
gcgtgcgacgcctctctggtggcggtggacttcaataagactcgctctcctctcccggcg
ggcgagacgcagcacacgggttgcgtgttctgcgaccccgtgttccaggacctggtggag
ctcaagcacgccaccatgtaccggggagggggcgccaggcggggggggcggggccggggg
cggggccgaggacgccgggggggcaacatcaaaaaacctaaagacaagatggccgccttg
gcagcttactttgtgtag
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