Pseudoliparis swirei (Mariana hadal snailfish): 130197810
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Entry
130197810 CDS
T09868
Symbol
zgc:110269
Name
(RefSeq) probable flap endonuclease 1 homolog
KO
K04799
flap endonuclease-1 [EC:3.1.-.-]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03030
DNA replication
pswi03410
Base excision repair
pswi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130197810 (zgc:110269)
03410 Base excision repair
130197810 (zgc:110269)
03450 Non-homologous end-joining
130197810 (zgc:110269)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pswi03032
]
130197810 (zgc:110269)
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130197810 (zgc:110269)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130197810 (zgc:110269)
DNA replication proteins [BR:
pswi03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
130197810 (zgc:110269)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
130197810 (zgc:110269)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
130197810 (zgc:110269)
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
130197810 (zgc:110269)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPG_I
XPG_N
5_3_exonuc
DUF6291
NPR1_interact
Motif
Other DBs
NCBI-GeneID:
130197810
NCBI-ProteinID:
XP_056276696
LinkDB
All DBs
Position
8:complement(11207414..11212157)
Genome browser
AA seq
345 aa
AA seq
DB search
MGITKLADLIRQDAHGAISHKDISDYTGKVIALDTSVVMNQFRAATPSQSPLTGLFFRTL
TFLEHGIKPVFVFDGKPPVEKTHVLEKRAAAAGWRSANCTGAASLQTKDCLQLLKLLGVP
VIQAPGDAEALCAWLVRQGTVDAVASEDMDTLPFGANILIRQLNAKKDSEVVEYSLTKLL
EKLQISHEEFVDLCILLGCDYCDKIAGLGPKRALTLIQKHRTIENVVSHINRKTHPVPLF
WKYKEARKIFLDAPQTVAPELTWAEPDEEALVRLLFNVKEARVRRRMEKFRQTRESKREE
REKETAAGGSRQSRMQDFFRVTRKRENPVDAADPLSSKRKRPKSK
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atggggatcaccaagctggccgatctgatccgccaagatgctcacggtgcgatttctcac
aaggacatcagtgactacaccggaaaagtaatcgcactggatacgtctgttgtcatgaat
cagttccgtgctgcgactccttcacaaagccccctgacaggtctcttcttccgcacactc
accttcctggaacacggtataaagccagtctttgtgtttgacgggaagcctccagtggaa
aagacacatgttctcgagaagcgagcggcagcagctggttggaggtcagccaactgcaca
ggcgcagcatcacttcagaccaaagattgtctccagctcctgaagcttctgggtgtacca
gtcatccaggctccaggggatgctgaggctctgtgtgcatggctggtgagacagggcact
gtggatgccgtggcatcagaggacatggacacactgccatttggagccaatattctaatt
cgccagctaaatgccaagaaggacagtgaggttgttgaatattctttaaccaagctgtta
gagaaactacaaattagtcacgaggagtttgttgacttgtgcattttgttgggctgtgac
tactgtgacaagatagccggtttgggtccaaagagagctctgacattgatccagaagcac
cgaactattgaaaatgtggtttcgcatatcaacagaaagacccatcctgtgccacttttc
tggaagtacaaagaagcacggaagatattcttggatgcaccacaaacagtagctccggaa
ctcacctgggctgagccagatgaagaagccttggttaggctcctctttaacgttaaggag
gcccgggtccgtcgtcgaatggagaagttccgtcagacgcgggaaagtaagcgggaggag
agggaaaaggagactgcagcaggaggtagcaggcagtctcgcatgcaggacttctttcga
gtcaccagaaagagggagaatcccgtggatgctgcagaccctttaagcagcaaaagaaag
aggccaaagtcaaaataa
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