Pseudoliparis swirei (Mariana hadal snailfish): 130197823
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Entry
130197823 CDS
T09868
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03008
Ribosome biogenesis in eukaryotes
pswi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130197823 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
130197823 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130197823 (xrn1)
03009 Ribosome biogenesis [BR:
pswi03009
]
130197823 (xrn1)
03016 Transfer RNA biogenesis [BR:
pswi03016
]
130197823 (xrn1)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130197823 (xrn1)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
130197823 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
130197823 (xrn1)
Ribosome biogenesis [BR:
pswi03009
]
Eukaryotic type
Pre-60S particles
RNases
130197823 (xrn1)
Transfer RNA biogenesis [BR:
pswi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
130197823 (xrn1)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130197823 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
130197823
NCBI-ProteinID:
XP_056276718
LinkDB
All DBs
Position
8:complement(20324883..20350877)
Genome browser
AA seq
1702 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPLKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALDKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHTKVSGDRMWQNVNVYLSGHETPGEGEHK
IMEFIRSEKTQPDHDPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKNQKRIT
APEETTFHLLHLSLMREYIDYEFSELRNHIGSNYDLERIIDDWILMGFLVGNDFIPHLPH
LHISHDALPLLYKTYIRALPTMGGYLNENGHLNLKHFEKYMEKLAEFDREHFSDIFVDLK
WFESKVGNKYLNEAAGLAAEKEAAAKAANKNKDFTLTERVIGEGKEGVAEEEEEEDMFET
EFRQYKRTYYMTKMGVDVVSDDFLATQAKCYVEGIQWILHYYYHGVQSWSWYYPYHYAPF
LSDIRNISGLKLTFDLEKPFMPFQQLLAVLPAASMELLPESYRHLMTSENSPIIEYYPLD
FQTDLNGKQQEWEAVVLIPFIDERCLLAAMDPFNNKMTKEEKGRNRHTECAVHSYSADHD
FTYTSNLPLLFPDIVHCHVRKTDIPMDAWHVALDHVCRRFDRSALYFCGFPTLQHIKHKF
FKKKSGVVVFQQSSRGENMMLDILPSPDGEPVCDHVAAHVLGKSVFVNWPHLEEARIIAV
SDGHVKFCLDEPPGVQIVYDRPSTPPPTKVTCPSDKEQKDWVKDVQGLTEYFVKRKGIIV
HDTSVVLYGQLLSGRKYIPKANGVVELEKQWSKQVLPFAYQTIVKDIKAFYSSVTSFTSL
DELFPPATTVFMVGNPYYGAMGEVQDSSDVIKDGRVRVVFNVPHEPQLELLIQNQHKYCV
KYSPGYFLASRLGITSYLVSRFSGSIFIGRGSKKNPCGEQKANVGLNLKFNKKNEEVPGY
TKRTEKEWLYSSAVEELLAEYLDRFSEVFNLVSRNSHDDVFYEDDVWPAEDQNGAEKVGE
ITSWLKGHPVSSIGRTSCDLLVLDSAIMERIEDAVERAKVKKSTKKVRVTVKPHLLFRPL
EQQQGVVPDPDSDYRLFDRVINARESFSVPLGLRGTVVGIKGAEREAEVLYEVVFDEEFA
GGLDIRCTSPRGYRLPPCALINISHGVRVDHGSHKLTAIVKPQPATAANFNSPRQLNHSP
RSPFMSTQHNNKQGVVKPASQANNRSSPSKGPIQKQQTKEYTNVWQSLQNSGPPVKPPAH
WHNEGLSQQGSNNTAPVGGIRLLKKNEDANSLFPPQNTANKASTEFEDLIASLNISKGSQ
QTPPPPAPPQVPPSQSDGPLSPQSFAMKGTLMLKEMLKIDGAGTGSPSSYQEAADTGGQQ
HNRRRSSKKLAANMNAPFGDNAALASPSLAGSSNIPITVMTSKASELACVCVGLGMAPPD
FSFIGSRQGRAFVCQVKLSNGLMVHGPQCQSESDAKEKAAFFALQRLNSVGTGFPLPPLY
PGMGQIRPPPLGAMTSVFNQQGGLLLPAQGFGPAPLWGMPLPPPHHPHLQQNQPFFGPTG
TFPGAGRPQPATAPPMASHNQFIPLQVTKKRVSANKKSQDTWEFYSAAHTVSRNQSHKPQ
NQPLDHSLAQEEPQGGQPQQHGANSNHSPPSPGPADAASATAAALHTPPRQSIPATGHTP
GSSSKRKNRKLAVNFEAAKVSE
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgccgaaattttaccgatggatctcggagcgctatccttgtctcagtgaagtt
gtcaaggagcaccagattccagagtttgacaacctctatctggacatgaacgggattata
caccagtgctcccacccaaacgatgaggatgtgcacttccgcatttccgaggagaagatc
ttcgcggatatcttccactacctggaggtgctcttccggatcatcaagcctctcaaggtc
ttcttcatggcggtggacggcgtggcgccgagggcaaagatgaaccagcagagaggccga
cgattcaggtcggccaaagaagcagaggacaagataaagaaagctctggataaaggagaa
gtgcttcccacggaggctcgctttgactccaattgtatcactcccggcaccgacttcatg
gcacgcctacaggagcagctcaagtatttcgtccacaccaaggtctccggtgaccggatg
tggcagaacgtcaacgtctacctgtcgggtcacgagactccaggggagggagagcacaag
atcatggagttcattcgctccgagaaaacccagccagatcacgaccccaacacccgccac
tgcctctacggcctggatgctgacctgatcatgttggggttgacaagccacgagccaaat
ttttccctgctcagggaagaggtccgcttcggggggaagaaaaaccagaaacgaataacg
gctccagaggagacaacttttcacttgcttcacttgtctctgatgagggagtacatcgac
tacgagttctctgagctccggaatcatattggttctaattatgatttggagcgaataata
gacgactggatcctcatgggcttcctggtgggcaacgatttcatccctcacctcccccac
cttcacatcagccacgacgctctgccgctgctgtacaagacctacatcagggccctgccc
accatggggggctacctgaatgaaaacggccacttgaacctgaaacattttgagaagtac
atggagaagctcgctgagttcgaccgggaacatttcagtgacatctttgtggacttgaag
tggtttgagagtaaagtcggaaacaagtatctgaacgaggccgccggactagcggcagaa
aaggaagctgccgctaaagccgcaaacaagaacaaggattttaccttgacagaaagagtg
attggagaaggaaaggaaggtgtcgccgaagaggaggaggaggaggatatgtttgaaact
gaattcagacagtacaagcgcacctactacatgaccaagatgggcgtggatgtggtgtct
gatgactttctagccacgcaggccaagtgttacgtggaaggcatccagtggattctacac
tactattaccacggtgttcaatcctggagctggtactacccctaccactacgccccgttc
ttatccgacatcaggaacatatcggggttaaagttgacctttgatcttgagaaacccttc
atgcccttccagcagctgttggcggtcttacccgccgccagcatggagctgctgcccgag
agctaccggcaccttatgaccagtgagaactcccccatcatcgagtactacccacttgac
tttcaaacggacctcaatggcaagcagcaggaatgggaggcggttgttctcattccattc
atcgatgagaggtgcctactagcagccatggaccccttcaataacaagatgacgaaagaa
gagaagggccggaatcgccacacggagtgtgcggtgcattcgtacagcgccgaccacgac
ttcacgtacacctccaacctgccgctgctgttccccgacattgtccactgccacgtcagg
aaaacggacatcccgatggacgcctggcacgtggcgttggaccacgtgtgcagacgcttc
gaccgctcggctctgtacttctgtggcttccccacgctgcagcacatcaaacacaagttc
ttcaaaaagaagagtggggtggtcgtgttccagcagagcagcagaggagagaacatgatg
ctggatatcctccccagcccagacggcgagccggtttgtgaccacgttgccgcacacgtg
ctggggaagtctgtgttcgtcaactggccacatctcgaggaggctcgcatcatcgccgtg
tcggatggacacgtcaagttctgtctcgatgaaccacctggtgtccaaatcgtgtatgac
aggccctccacgcctccccccaccaaagtcacctgcccttctgacaaggagcagaaggac
tgggtgaaggatgtgcagggactcacggaatacttcgtgaagaggaaaggcatcatagta
catgacacgtcggtggttttgtacggccagttgttgtcgggaaggaaatacatccccaaa
gccaacggggtggtggagcttgagaagcagtggtccaagcaggtcctgcccttcgcctac
cagaccatcgttaaggacatcaaggccttctactcgtcggtgaccagcttcacaagctta
gatgagctcttccctccggccaccaccgtgttcatggtgggcaacccgtactacggcgcc
atgggcgaggtgcaagactcgagcgatgtcatcaaagacggccgggtgcgggtcgtcttc
aatgtgccgcacgagccacagctggagcttctgatccagaatcagcacaagtactgcgtg
aagtacagccccgggtactttctggcgtctcgtctcggcatcaccagctacctcgtgtcc
cgcttctcgggaagcatcttcatcggcagaggctccaagaagaacccctgtggggagcag
aaggccaacgtgggcctcaacctgaaattcaacaagaagaacgaggaggtccccgggtac
acgaagaggaccgagaaggagtggctctactcttctgctgtggaggaactgctggcggaa
tacctggacagattttctgaagtcttcaacttggtgtccagaaacagtcatgatgatgtt
ttctatgaagatgacgtctggcctgccgaggaccagaacggtgcggagaaggttggtgag
atcacctcgtggctgaaaggccacccggtgagctccatcggcaggacgtcgtgtgacctt
ctggtgctggactctgccattatggagaggatcgaggatgcggtggagagagccaaggtg
aaaaagagcaccaagaaagtccgcgtgacagtcaagcctcatcttctcttcaggcccttg
gaacagcagcagggagtggttccagacccggactccgattaccgcctgttcgaccgggtc
atcaacgccagggagagtttctccgtcccactgggactccggggaaccgtcgtcggcatc
aaaggagccgagcgcgaggccgaggtcctctacgaagtcgtttttgacgaagaattcgcc
ggaggtctcgacatcaggtgcacgtcgcctcggggttaccgcctcccgccctgcgcgctc
atcaacatttcccacggagtgcgagtagatcacggttcccacaaactcaccgccatcgtc
aaacctcagccggccacggccgccaacttcaactcccctcggcagctgaaccactctccg
cggtcgcccttcatgtcgacacagcataacaataaacaaggcgtggtgaagccggcgtcc
caggccaacaacaggagctctccctcgaagggtcccatccagaaacaacagaccaaggag
tacacaaatgtgtggcagtctctgcagaactctggtcctcccgtcaagcctcctgctcac
tggcacaacgaaggactttcccaacaagggtccaacaacaccgccccagttggcggaatc
agactgttgaagaaaaatgaagacgccaactcccttttcccccctcagaacacagccaat
aaggcttccactgagtttgaggacctgatcgccagtctgaatatttccaagggcagccag
cagacgccaccccctcctgctcctccacaagtgccccccagccaatcagatggcccgttg
tcccctcagtccttcgccatgaagggaaccctgatgctgaaggagatgctgaagatcgac
ggcgccggaacaggaagtccctcctcctatcaggaggcggccgataccggcggccagcag
cataacaggcgacggtcctccaaaaaactagcagccaatatgaacgcccccttcggcgac
aacgctgcattagcttccccctcattggccggctcttccaacatccccatcaccgtgatg
acaagcaaggcgtcggagctggcatgcgtctgcgtggggctgggcatggcgccacccgac
ttcagctttataggcagcagacagggtcgggcgttcgtgtgtcaggtgaagctgtccaac
gggctgatggttcacggtcctcagtgccaatcagaaagtgacgccaaggagaaagctgcc
ttctttgcccttcagagactgaactcagtgggcactggctttcccctcccacctctatac
ccgggaatgggtcagatccgacccccgcctttaggagcaatgacctccgtcttcaaccaa
caaggtggtctgcttctgcccgcccagggtttcggccccgctccactgtggggaatgccg
ctgcctcccccccatcacccccacctccaacagaaccagccgttcttcgggccaacagga
accttccccggtgccgggcgcccccagcctgcaacggcgccgcccatggcctcccacaac
cagtttattccgctccaggtgacgaagaagcgagtttcagccaacaagaagagccaggac
acgtgggagttctacagcgccgcccacacagtgtccagaaaccagtcgcacaagccccag
aaccagcccttggaccactcgctggctcaggaggaaccacagggcggccagccgcagcag
cacggcgccaacagcaaccactccccgccaagtcccggcccggcggacgccgcttcagcg
acggcggcggccttgcacacgccccctcgtcaaagcatcccagccacgggccacaccccc
ggctcctcctccaagaggaagaacaggaagcttgctgtcaactttgaggcggctaaagtc
tccgagtga
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