Pseudoliparis swirei (Mariana hadal snailfish): 130197895
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Entry
130197895 CDS
T09868
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03013
Nucleocytoplasmic transport
pswi03015
mRNA surveillance pathway
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130197895 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
130197895 (acin1a)
03015 mRNA surveillance pathway
130197895 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130197895 (acin1a)
03041 Spliceosome [BR:
pswi03041
]
130197895 (acin1a)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130197895 (acin1a)
Spliceosome [BR:
pswi03041
]
Complex C
Other components
EJC/TREX
130197895 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
130197895
NCBI-ProteinID:
XP_056276838
LinkDB
All DBs
Position
8:complement(18287873..18302284)
Genome browser
AA seq
1683 aa
AA seq
DB search
MADLEDVTLDGRPLQTLRVADLKAALEERGLSKSGQKNALVKRLKGALMLENLQRTSTAN
IGMQPNSNIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAYDTNESEDHTEVNNSTSCP
PQAQDAAPALPEQHKPPGPSGVDGLFDAVNEGEGKRDQEADLPGPPASGSMAMRVPGSED
RPEKGSASNEAAADSDDDDSEDGEEDGDDDDWESGARRRGHQEPATAPTTRERSGASCQP
PQQHMPSLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPDVAPARRSSSTSSSGSSSS
GSRSSSPEPQRSGHAERKPGPLTLLARKMESEGAFSGAGWHSAGGEGERQDGSSLATSFP
GRGLPEGLVSAITHTANTAGHASFPTTPGLNQGFAGAHSAHMQLPVSVLKATATEERDVE
MERERALELERQEKQRKLEQARAMEEERERALAMEREQRERALEMERIERQQAIEREEQE
KALQRERELALERERQERERALAQEREERERALAQERALEMERQKELERERAQERERRER
EELERVKELERSKALEQERKERERALEQERLQRERVLEAERKEKERIEREMALEQERLER
ERLERQRAFEQERLERAFEQERLERAFEQERLEMERVLEQDRLERERAVERERLEREKAL
EQQRLEREKERLEQERIDKERALAQERLKLERALEQQRLELERKEKERIEREKALAQERI
AKEKALEREREEKERLKREAALEEERKERAKALEKDRKEKERALEHERLEKEKAAQKERE
EKERALEQEKERARLAERERESHLPPSKRGREIGLGAAPTPPAFAAGPGRKSSTEAGEQE
GDHVSKSRGEAAESSALVSPMPQSSFKKFRFLRETPVQVPASSPPVVIKRPRNFSDTPPP
REEGLQSSTEQDESPKGTKQEGVARAPEAVEAAAPAKEPLVGTTLVPSPKKAGATSSVSE
DKEKESAKKVEESSPANQPATAQRRGRDAKEEEKHARRRSSSNDSSDSDSDSGSSSSGSS
GSSSSSPEKTSPTSRGRREKKPDKDTSPQHRGTPAAGLKETPKASPNKRDMPAEKSTADG
DTRTTETSMEAPIREESQRKRKDNEGEEESDKKRQVKDTAMAEPEKLSETSEETPKAFSA
RKISISSSKLSPGSAEGEQDGGAAAAGRKRRWGSSTAVAAKKPSISLTTDSLKSLIPDIG
PCLGQEADVDLHPEEAVLSGAEDEERERSDQDLQIRRTVTQVVHLESQENGQAESKRSRH
EESEESDDPQGDGERTQAPEEKMAVPVAMETQSPSHTSHDVESNNVTPSDTLIRRSVSQQ
KTGVSITIDDPVRATRQPSPPRGKVSSIVHISNLVRPFTLGQLKELLSRTGTLVDDGFWI
DKIKSHCFVTYCSSEEAVATRASLHGVKWPQSNPKVLSVDFCQKDELDFHKGTADRPPAE
EQGLGANRGRTAALPPLLPERDQWAEREREMERREKARAEREWDRDKIREFGKPGEEKEG
GPRRSRSRERRRKERGKSKEKKTEKKEKVAEDPPAKMLDDLFRKTKAAPCIYWLPLTDEQ
FAQRETARADRMKEREKRRKEQDEEEENKREDEHKERTKAGGVPAGERSEGEKEKEKEKE
KEKEKEKEKEKDRERDRDRGRDREKERERETDKRRDDYGRPEGRGVGGGRRSRSRSDPRE
RRR
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacgctggacgggagaccgctccagacacttcgggtggcg
gatttaaaagctgctcttgaggagagggggctctcgaaaagcgggcagaagaatgcgctc
gtcaaacgactcaagggggctctcatgcttgagaatcttcagaggacctccactgctaac
atcggaatgcagccaaattcaaatatcggtgaggaaatgagccagaacagcttcatcaag
cagtatctggctaaacaacaggagctcctgaggcagcggctggagagagaggcccgcgaa
gcatacgacacaaatgagtcagaggaccacacagaagttaacaacagtacatcatgccct
cctcaagcccaggatgccgcaccagcattgcctgagcaacacaagccgcccggcccctca
ggtgtcgacggattgtttgacgcagtgaatgagggcgagggtaaaagggaccaggaggcc
gacctgcccggacctcctgcttctggctccatggccatgcgtgtccctggcagtgaggac
cggccagagaaagggtccgcctcgaacgaagctgctgcagacagcgacgacgacgacagt
gaggacggcgaagaggatggcgacgacgacgactgggaaagcggtgctcggaggagaggc
caccaagagccggccacagcgcccacgaccagagagaggtctggggcatcctgtcaaccc
cctcagcaacacatgccttcccttttgtcccctcagctccgccagccaactcctcctccc
tccccgcctccagagttgtcattccccctgcctgacaccccaaaacagagcccccctagt
ccagatgtagccccagctaggcgctcatcgagtacctccagctccgggtcctccagcagc
ggcagccgcagtagcagcccggagccacagaggagtggtcatgccgagcgcaagccgggc
ccgctgacacttctggcacgtaaaatggagtcagaaggtgctttctctggagcaggttgg
cacagcgccggtggcgaaggtgagaggcaagacggcagttctctggctacatcatttccc
ggcagagggcttccagagggtctggtatctgccatcactcacacggccaatactgcaggg
catgcgtcatttcccacgactccaggcctcaaccagggtttcgcaggagcacattcggcc
catatgcagctgcccgtcagtgtgctcaaggccactgcaacagaagagagggacgttgag
atggaaagagaaagggcccttgagctggaaaggcaagagaagcagcggaaacttgagcaa
gcacgagcgatggaggaagagcgggaaagagctctcgcaatggagagagagcaaagagag
agagctctggagatggagagaattgaacgacagcaggccatagaaagagaagaacaagaa
aaggctttgcagcgggagagagaacttgcccttgaacgagagaggcaggagagggaacga
gctttggctcaagagagggaagagcgagagcgagccttggcacaagagagggccctggag
atggagaggcagaaggagctcgagagagagagggcccaggagagagagaggcgagagaga
gaagaactggagcgggtaaaagagctagagagatccaaggccttggagcaagaaaggaag
gagagggagagggctcttgagcaagagaggcttcagagggagagagttctggaggctgag
agaaaggagaaggagaggattgagagagagatggctctggagcaggaacggttggaaagg
gaaagattagagagacagagagcctttgagcaagagaggctggagagagcctttgagcaa
gagagactagagagagcctttgagcaagagcgactagaaatggagagagtcctggagcaa
gaccgactggagagggagagggccgtggagcgagagcgtctggagagagagaaagccctg
gagcagcagcgcttagagagggagaaagagcgactagagcaagagagaatagacaaagaa
agagctctggcgcaagaacggttgaagctggagagagctctagaacagcagaggttagag
cttgagaggaaggaaaaggagagaattgagagagagaaagcattggcgcaagaaaggatc
gcgaaggagaaggccttggaacgagaacgggaggaaaaagagagactgaagagagaggca
gccctggaagaggagaggaaggagagggcgaaagccttggagaaggataggaaggagaaa
gagagggctcttgaacacgaaaggctagagaaggagaaggccgcgcagaaagaaagggag
gagaaggagagggccctggaacaggagaaggagagagcgaggttggctgaaagggagcga
gaaagccacctccctccgtccaagcgcggccgtgagatcggtctcggcgccgcgcccact
cctcctgccttcgccgccggaccgggtagaaagtcatcaactgaggccggagagcaggaa
ggcgaccacgtgtcaaagtcccgcggagaagcggccgaatccagtgcactcgtgtcccca
atgcctcaatcctcattcaagaagttccggttcttaagggaaaccccagttcaggtccca
gcttcctctcctcccgtggtcatcaagcgacctcgcaacttctccgatacccccccgcca
cgggaggaaggactccagtcctccactgagcaggatgagtcaccgaagggcacgaaacag
gagggcgttgccagggcgccggaggccgtggaggccgccgcgcccgcgaaggaacccctt
gttggtaccacactggtcccgagtcccaagaaagcgggggccaccagctcggtgtcggag
gacaaagaaaaggaatcggccaaaaaagtcgaggaaagcagtcccgcaaaccaaccggcg
actgcacagcgtcgaggacgagatgcaaaggaggaggagaaacacgcaagacgaaggtca
tcgtctaatgactcctcagactcagactcagactctggttcctcatcatctgggtcgtct
ggctcatcctcatcctctccagagaaaacctcccccacttcaagagggagaagggaaaag
aaacctgacaaagacacctcaccacagcaccgggggacaccggctgcaggcttgaaggaa
actccaaaagcctcccctaacaaaagagacatgcctgcagagaagagtaccgctgatgga
gacactcgcaccacggaaacatcaatggaagcaccgatcagagaggagtcccagaggaag
agaaaggacaacgaaggagaggaggaatcagacaaaaaaaggcaagtgaaggacactgcc
atggcagagccggagaagctctcagagaccagcgaggagacgccaaaggccttctcagct
cgtaagatctctatcagcagcagtaagttatcccctggcagtgcagagggcgagcaggac
ggtggggccgccgcggccggtcgaaagaggaggtggggctccagcacagccgtcgctgcc
aagaagccttccatcagcctgaccaccgactcactcaagtccctgataccagacattggc
ccgtgtctcgggcaggaggccgatgtggacctgcacccagaggaagccgtcctctccgga
gctgaggatgaggagagggaacgctccgaccaagaccttcagatccgacgcactgtcaca
caggttgtgcacctggagagccaggagaatggacaggcggagtctaagcggagcagacat
gaggagtctgaggagtcggacgacccacagggagacggcgagaggacacaggcgcctgaa
gagaagatggccgttcctgtggccatggaaacccagtccccatcacacaccagccacgat
gtagaaagcaacaatgtgacccccagcgacaccctcatccgtcgctccgtcagccagcag
aaaacgggcgtttccatcaccatcgatgatcccgttcgcgcgacccggcagccctcgccg
cctcgaggcaaagtctccagcattgttcacatcagcaacctggtgaggccgttcactctg
gggcagctgaaggagctgctcagcaggacgggcaccctggtggacgacggcttctggatc
gacaagatcaagtcccactgctttgtcacctactgcagctctgaggaggccgtggccaca
cgggcatctcttcatggagtgaaatggcctcagagcaaccccaaagtcctcagcgtagac
ttctgccagaaggatgagctggacttccacaagggcaccgcagacagacccccggccgag
gaacaggggctgggcgccaaccgcggccgaaccgccgccctgccccctctccttcccgag
cgcgaccagtgggcggagcgcgagcgcgagatggagcgccgggagaaggccagagcggag
cgggagtgggaccgcgacaagatacgagagttcgggaaaccgggcgaagagaaggagggc
ggtccccggaggtcacgctccagagagagacgccgcaaggagaggggaaagagcaaggag
aagaagaccgagaagaaagagaaagtggctgaagatccccccgcaaagatgctcgatgac
ctgttccgcaaaactaaagcggcgccttgcatctactggcttccactgacggatgaacag
tttgctcaacgagaaactgccagagcggaccggatgaaggagcgtgagaaacggaggaag
gagcaagacgaggaggaggaaaataaaagggaagacgagcacaaggagaggacgaaagct
ggaggagtcccagcgggcgagcgcagtgagggtgagaaggagaaggaaaaagagaaggag
aaggaaaaagagaaggagaaggagaaggaaaaagacagggagagggatagagaccgaggg
agggacagggagaaggagagggagagggagactgacaaacgcagggatgactacggtagg
ccggagggccgcggggtcggcgggggccggcgctcacgcagccgcagcgacccgcgagag
cggcggcgttaa
DBGET
integrated database retrieval system
