KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130197947
Entry
130197947         CDS       T09868                                 
Name
(RefSeq) WD repeat-containing protein 48 isoform X1
  KO
K15361  WD repeat-containing protein 48
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    130197947
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pswi03400]
    130197947
DNA repair and recombination proteins [BR:pswi03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     130197947
SSDB
Motif
Pfam: WD40_Prp19 DUF3337 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 EIF3I Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_DCAF12 ANAPC4_WD40 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_RIG_2nd Beta-prop_Vps41 WD_LRWD1 WD40_RFWD3 WDR54 Beta-prop_IP5PC_F Beta-prop_NUP159_NUP214 RAWUL WD40_like Tfb2_C
Other DBs
NCBI-GeneID: 130197947
NCBI-ProteinID: XP_056276910
LinkDB
Position
8:17980827..17991251
AA seq 677 aa
MATHHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVY
QHKQDSYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYV
KALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMG
TVIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGTIRLWSLG
QQRCIATYRVHDEGVWALQVNEAFTHVYSGGRDKKIYCTDLRNPDIRVLICEEKAPVLKM
ELDRSADPPPAIWVSTTKSSVNKWSLKGMHNFRSSGEYDNDCTTPLTPLCTQPEQVIKGG
ASIIQCHILNDKRHILTKDTNNNVAFWDVLKACKGEDLGKVEFEEEIKKRFKMVYVPNWF
SVDLKTGMLTITLDESDCFAAWVSAKDAGFSSSDGSDPKLNLGGLLLQALLEFWPRTRIN
PIDEEENEGSQVNGEQENRVQKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESM
LLNETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVRKVMEHV
YEKIINLDNESQTTSSSANDKPGEQEKEEDMAMLAEEKIELMCQDQVLDPNMDLRTVKHF
IWKSGGDLTLHYRQKST
NT seq 2034 nt   +upstreamnt  +downstreamnt
atggccacgcatcacaggcaaaatgctgctgggcggagaaaagtacaggtgtcctacgtc
attagagacgaggtggagaagtacaatcgcaatggggtgaacgcgctgcagctcgacccg
gcgttgaaccggctcttcaccgccggaagagactccatcatccggatatggagcgtgtac
cagcataaacaggactcatacattgcctcgatggagcatcacacagactgggttaatgac
atagttctctgttgcaacggcaaaacactgatatctgcctcctcggatacaacggtcaaa
gtatggaatgcgcataaaggcttctgcatgtcgacgttacggacgcacaaggactacgtg
aaggctctggcatacgctaaggacaaggagcttgtggcgtccgcaggtctcgaccggcag
atctttctttgggatgtgaacacactgacggcactcaccgcttccaacaacactgtaacc
acctcgtcactcagtgggaacaaggactccatctacagtctcgctatgaaccagatgggc
acggtcatcgtatctggatcaacagaaaaggtcctgagagtgtgggatcctcgaacatgt
gctaaactgatgaagctcaaaggtcacacggacaacgtgaagtcgttgctgctgaaccga
gacggcactcaatgcctgtccggcagctcagacggcaccatccgcctgtggtctctcggc
cagcagaggtgcatcgccacgtacagggtgcacgatgagggcgtctgggccctgcaggtc
aacgaggccttcacacacgtctactcgggaggcagggacaagaagatctactgcactgac
ctgcgtaaccccgacatccgcgtgctgatctgcgaggagaaggccccggtgctcaaaatg
gaactggacagatctgctgacccacctccagcaatctgggtctccaccaccaagtcatcc
gtgaataaatggtctctgaagggaatgcacaacttccggtcatcaggggagtatgacaac
gactgcaccacccctctgacgccgctgtgcacccagccggagcaagtcatcaagggaggt
gccagtatcatccagtgccacattctgaatgacaagagacacatactcaccaaagatacc
aacaacaatgtggccttctgggatgtcctgaaggcgtgcaaaggtgaagacttggggaaa
gtggagttcgaagaagagataaaaaagcgcttcaagatggtctatgtgccgaactggttc
tccgttgaccttaaaactgggatgctcactatcactttggatgagagcgactgcttcgct
gcctgggtgtctgcaaaggacgctggcttctcaagctccgacggatccgaccccaagctg
aacctgggcggactgctgctccaggcgctgctggagttctggcccagaactcgcatcaac
cccatcgacgaggaggagaacgaggggagccaagtgaacggagagcaggagaaccgggtc
cagaaaggaaatggatatttccaggtgccaccgcacacgcctgtcatctttggggaagcc
ggaggcagaactttattcaggttgctgtgcagagattcaggcggagagaccgagtcgatg
ctgctgaacgagaccgttccacagtgggtcatcgatataactgtagataaaaacatgccc
aagttcaacaaaatcccgttctacctccagccccattcttcctctggtgcgaagactctg
aagaaggaccgcctctcggccagcgacatgctgcaggtgaggaaggtgatggagcacgtc
tacgagaagatcatcaacctggacaacgagtcgcagaccaccagctcctcggccaacgac
aagccgggcgagcaggagaaggaggaggacatggccatgctcgccgaggagaagatcgaa
ctcatgtgtcaagaccaggtactggatcccaacatggacctgcgaacagttaaacatttt
atctggaagagcggcggggacttgacgcttcactataggcagaagtccacgtga

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