Pseudoliparis swirei (Mariana hadal snailfish): 130197983
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Entry
130197983 CDS
T09868
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04510
Focal adhesion
pswi04512
ECM-receptor interaction
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130197983
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130197983
09142 Cell motility
04820 Cytoskeleton in muscle cells
130197983
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130197983
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130197983
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
130197983
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130197983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
130197983
NCBI-ProteinID:
XP_056276970
LinkDB
All DBs
Position
8:14924060..14948775
Genome browser
AA seq
1673 aa
AA seq
DB search
MGRPLLGVSLVLFAVMLMGTVAKNCVCNGRSRCHCKGVKGSRGDKGFRGVTGPPGPGGRS
GSDGRPGPFGPKGSTGPDGLKGPKGDPGPDGKEGFAGSHGLPGIPGLQGPPGLPGASGCN
GTDGEEGPPGFPGVHGLDGSAGPPGLPGPKGESRASGNAVPGPPGLPGRDGEPGSPGSRG
EHGLPGDPGPRGSFGLPGRPGSSGSKGQEGTGAIPGPRGTQGRSGPRGPPGPPGRIKEFF
TGSLVLKGVKGSAGDVGIKGCKGTTGDPGYGYDTKGVKGDRGLEGPEGKSGKDGDPGRSS
RGWPGPRGDRGYAGTPGGTGEKGERGSPGPPEDIFGPLTEPLKGYRGDPGFPGSPGLLGR
QGVEGFPGPDGPPGHSSGFHEPGPSGPNGFPGHKGDPGEPGDIYPGLPGRDGGDGDQGPA
GDPGPPGPPEDRTNRITKGLPGMKGTRGPPGPMGYDGPYGIKGVKGETCYDCIGSGFSGP
PGPRGQPGIPGYNQGPGAKGDPGLPGASGLPGRPGPIGQIGFQGPLGPKGDSYSSNTPGI
KGEEGYPGQPGRPGADALPGFPGLPGRKGDQGPPGDSYLFPGAEGDRGYPGPPGPLGRPG
PVGQPGLVGFGPAGLPGSLGDVGVPGLPGQPGIPGQKGEPSHAHTNGLSGLPGFKGLPGS
HGSPGHLGAPGTPGIPGFRGQKGESGEVTFPGRPGMPGQKGDKGQTGLPGFPGRGVPGQP
GSQGLPGPSGLKGDGGPGYRGIPGPSGAPGEDGAQGPDGDPGTPGLPGNPGVHGNPGFPG
EKGTKGAVGPLGLPGNKDSCKGDLPSPTGSQGRDGYPGHPGPNGSPGEKGNPGSPGFGRP
GVPGEPGVVGPSVPGSHGLTGPQGTRGQHGLPGPPGLRGDPGPDGLPGYGPEGLPGIIGS
PGQIGDPGPDGASGSWGPPGMNGDPGPRGLPGLLSPQQINVVGPPGEPGNPGYPGLSGAG
GDTGSTGPKGRKGVHGALGGPGQRGPPGDPGVDGLVVSEGSRGSDGAPGESGVIGHPGLK
GIKGDQGISGGPGPAGAPGRTGNKGINGEPNYNGYGRPGTIGQKGEPGSTNTHVMKGQKG
EHGSVGPLGLPGHHGAKGNPGPDGQNGPSGYPGPKASDGLSGNKGQRGPNGPAGDPGPPG
VSSYPGPRGNQGRDGIPGPPGQKGDTNIIGGAPGRRGDTGQQGPPGSPGPPGFTLTGSPG
PMGDRGFPGSTGGSGPKGLPGREGACVPGSKGDHGQPGNPGGPGYPGLPGLPGPTLPGLK
GDRGDSGLTGAQGHRRPRGDTGPEGPPGPRGRPGGLGRRGDSGPPGTYGLPGVIGDPGHI
SGPPGPPGIKGFPGRPGVKGEPASVSVTYEPGPPGSPGPSGNRGAPGHTGPSGLSGRPGQ
SGVKGKRGSSPDGHPGFTGHKGDKGIAGLPGPEGRAGDSGNKGRPGLPGKGGPGYLNSFL
IARHSQSMSVPDCPLGTSLIYSGYSFLFINGNERAHGQDLGTTGSCLPRFTTMPFLFCDT
ESNCRYASRNDYSYWLSTGTPMPTNMASITGDTLASYISRCSVCETTSNVIAVHSQTTLT
PECPRDWESLWTGYSFVMQTGAGAEGSSQPLVSPGSCLESFRQVPFIECHGRGTCNYYPD
SYSYWLASLDPNSMFSKPVPHTVKGPSLQSVISRCRVCRKPWQPTDDKRGDNF
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atgggaaggccactgttgggagtctctctggtcctgtttgctgtgatgctgatgggcact
gtggccaaaaactgtgtgtgtaatggaagatcaaggtgccactgcaaaggagtgaaaggc
agccggggagacaaaggtttccgaggagttaccggtcccccagggccagggggccgttct
ggatcagatggtcgtcctgggccttttggaccgaagggcagcactgggcctgatggactg
aaggggccgaaaggcgatccgggacccgatggcaaagaagggtttgctggctctcatggt
ttaccgggaatcccaggtttacaagggcctccaggactcccaggggcctctggctgcaat
ggaactgatggagaagaggggcctcctgggtttcccggcgtccatggccttgatggaagt
gcaggtccacctggtctgcctggacctaagggtgaatctcgggcttcagggaatgcagta
ccagggccacccgggttaccggggagggacggagagccgggaagtccaggttcccgtgga
gagcacggactaccaggggaccctggacctaggggctcctttgggttacctggtcgtcct
ggatcctcaggatcaaagggtcaagaaggcacaggcgccatcccaggacctcgggggacg
caggggagatcaggaccacgcggaccaccagggccaccgggtcgaatcaaggagtttttt
actgggagtctcgtgttaaagggtgtaaaaggaagcgcaggagacgtaggaataaaagga
tgcaagggaacaacaggggacccaggttatggctatgacaccaaaggagtaaaaggagac
agaggtctggagggtccagaaggaaagtccgggaaggatggcgatcctggacgatcatct
cggggatggcctggccccagaggtgatcgaggatatgcagggacaccaggaggaacgggt
gaaaagggagagagaggtagccctggtccacctgaagatatatttggccctttgactgag
ccactcaaagggtaccgcggagatcctggttttccaggctcacctgggctccttggacgt
caaggtgttgaaggattccctggacctgatggacccccaggccattcatctgggtttcat
gagccgggccctagtggtcccaacgggtttccaggccacaaaggagaccctggggagccg
ggggatatttatccgggactcccaggtcgagatgggggcgatggggatcaagggcctgct
ggggatccgggcccacctggacctcctgaagacagaactaacaggatcacgaaaggtctc
ccaggaatgaagggaacacgaggtccgcctggaccgatgggatatgatgggccgtatgga
ataaaaggagtgaagggggagacgtgttatgattgtattggatcaggattctcagggccg
ccgggtccacgaggccaacccggcatccctggatataatcaaggaccaggtgccaaaggt
gatccaggcctcccgggagctagtggcttacctggaagaccaggtccaattggtcaaata
ggatttcaaggccctctgggaccaaagggagactcgtattcctccaacactcctgggata
aagggagaggaaggatacccgggacagcctggcaggcctggtgccgatgccctccctggg
tttcctggactaccgggtcgtaaaggcgatcaagggcctccaggggattcgtatctcttc
ccgggtgcagagggagaccggggttacccagggccacccgggcctctcggcagaccggga
ccagtgggccagcctgggcttgtgggctttgggcctgctggacttccaggaagtctgggc
gatgttggcgtccccggcctgccgggacaacctgggattccaggccagaaaggtgaacct
agccacgcccacaccaatggactctctggactccctggatttaaagggctgcctggttct
catggaagcccgggtcatctcggagcaccgggtaccccgggaataccaggttttcgagga
cagaaaggagaaagtggtgaggtgacatttcctggaaggccggggatgccaggacagaaa
ggtgacaaggggcaaacaggtctcccaggctttccagggaggggcgtgcctggtcagcca
ggttcacaaggccttcctggtccttcaggactaaagggtgacggtgggcctggataccgt
ggtatcccaggaccctctggggcccctggagaagatggagctcaggggcctgacggagat
ccagggaccccgggtctacctgggaacccaggagtacacggaaatcctggttttccagga
gaaaagggaactaaaggtgctgtcggtcccctaggactacctggaaataaagattcatgt
aaaggggatttacccagtccaaccggatcacaaggacgagatgggtatccaggacatcca
ggaccaaatggctccccaggtgaaaagggcaacccaggctcgccagggtttggtcgtcct
ggcgtccccggagaaccgggtgttgttgggccctcggtgcccggttcacacgggctcaca
ggaccacaagggactcggggtcaacacggcctgcccggtccaccaggactgagaggagac
cccggaccagatgggttaccaggatatggaccagaggggttgcctggaattataggatca
ccaggccaaataggtgaccccggcccagacggagccagtggttcctggggtccaccaggt
atgaatggcgacccaggtcccagaggtcttccaggccttctgtcgccacaacagatcaat
gttgttgggcctccgggagaacctggcaacccgggttacccgggcctatccggtgccggc
ggagatactggaagtactggaccaaaagggcggaaaggggtacatggagctctagggggt
cctggacaaagaggtccgccaggtgatccaggtgttgatggactagttgtctcagaagga
agtcgaggatctgatggggctccaggagagagtggggtcattgggcatccaggcctaaag
ggaataaaaggagatcaaggaatctctggagggccaggtccagctggtgcaccaggtcga
accggtaacaaaggcattaatggagagccaaattacaatggatatggaaggccgggaaca
ataggacaaaagggtgaaccaggatcaaccaacactcatgtgatgaagggtcagaaaggg
gaacatggttctgttggacctctaggtttaccaggacaccatggagccaaaggaaaccca
gggcctgacggacaaaatggtccgtctggctatccagggcccaaagcttcagatggactt
tcaggaaacaaaggacagagaggacccaatggaccagcaggggaccctggcccgccgggg
gtcagtagttatccaggtccgagaggcaatcagggccgggatggaatccctggaccaccg
gggcagaaaggagacacaaacattataggaggggcacctggtaggcgtggggacacaggt
caacaaggtcctcccgggagccctggtccccctggcttcactctgacagggagtcctgga
ccaatgggagacaggggatttccaggatcaactgggggctctggtccgaaaggactacca
ggaagggaaggggcttgtgttcctgggtcaaaaggagaccacggtcaacctggcaacccg
ggtggcccaggctaccccggtttacctggccttccaggccccacactgccgggtttaaaa
ggagacagaggggactcgggtctgaccggagcccaaggccatcgtagaccccgaggagat
acaggccctgaaggaccaccgggtccaagaggccgacctggaggcctgggacgaagaggt
gattctggtcctcctggaacctacgggcttcctggtgtcattggagaccctggacacatc
tctggccctcctggtccacctgggattaaaggatttcctggacgacctggcgtgaaaggt
gaaccagcatctgtcagcgtgacgtatgaaccaggacctcctggctcacctggtccctct
ggcaaccgaggagccccaggacacaccggaccatcaggactatccggccgaccaggtcag
tcaggcgtcaaaggcaagcggggttccagcccagatggccatcctggatttactggacac
aaaggagacaaaggaatagcaggactgccaggtccagaaggccgagcgggagactcaggc
aacaagggtcggccggggctgccaggcaaaggtggtccaggttatcttaacagtttcctg
atagccagacacagtcaaagcatgagtgtccccgactgccctcttggcaccagcctcatc
tactctggttactccttcctcttcatcaacggaaatgagagagctcacggccaggacctt
ggcaccacgggaagctgcctccctcgcttcaccaccatgcccttcctgttctgtgacacg
gagagtaactgccgctacgcgtctcgtaacgactactcctactggttgtccactggcact
ccgatgccaaccaacatggcgtccatcacaggggatacactggcctcctacatcagcagg
tgctcggtctgtgaaaccacctccaatgtcatagccgtccacagccagaccactctgaca
cctgaatgtccccgagactgggagtcactctggactggatactcatttgtcatgcaaacg
ggagctggagcagagggctcctcccagcccctggtttctcccggctcgtgtctggaaagt
ttccgccaagtgccgttcatcgagtgtcacggcagaggaacctgcaactactaccctgat
tcctacagctactggttggcctccctagaccccaacagcatgtttagtaaacctgttcct
cacacagtgaagggaccttctctacaaagtgtcatcagccgttgtcgtgtctgcaggaaa
ccatggcaaccaacagatgacaaacgtggggacaatttttaa
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