Pseudoliparis swirei (Mariana hadal snailfish): 130197986
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Entry
130197986 CDS
T09868
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130197986 (rc3h1b)
04121 Ubiquitin system [BR:
pswi04121
]
130197986 (rc3h1b)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
130197986 (rc3h1b)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130197986 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
zf-CCCH
zf-C3HC4_2
Prok-RING_4
zf-CCCH_4
zf_CCCH_4
FYVE
NS3_helicase_C
Baculo_IE-1
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
130197986
NCBI-ProteinID:
XP_056276975
LinkDB
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Position
8:complement(15016510..15033934)
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AA seq
1132 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKVQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGTDPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGLMSDEGLPLDVEVTRKPS
PLTNGSGGPSLPQLIARGTDTVPYELLRKPMKMDGGSPSAPGSPPDGMDPALPKPGMPLP
PHVMAHSRMPVDHLSGVKHMPVVARGSPAYPQAPLPEMCYDTRPPPSASQYDPPQYPTGY
PYQQPPQYVPRDYMRNPPPPSESGPPYQDPYPGYGPPERSYQAPHSGPPFSYPHPPHHDR
GRHGSYPGPPPPPQPYPSQRDGLVRMSPAPLDMPPPSAGQTNSLYHQEPSSRDRYPPDGY
YTPGAQPPPVRAYVRGSSYSSSQPSLDYLHRRRQELLSQLEERKVISPPPFAASPTLPHP
FPSDYPPEYGEENSKTMVNRREPEYAGQYSPWSCETIGSYIGTKDPKPKDVMVPGTMDMM
NAEAKSLREASLEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTTGPVQAMA
SSPQNPSSKHMAMPAEYTYGSHGGWGGASYPSHQTASSSQGHFSERLPMAAPDREQLKIE
LQQVNQQINQQTQMRSMEAANNSLLLQREAGALAGQPVQPGQGQAQQQPKWPAVGASTAA
VSSEQLSLELHQVEREIGKRTREMALENQVTHDVQQYKIKPAENGQPEHKTQLEEISLAL
GEVSNGSNSLQDSAVGGSMLSLTNKTSALGLCSDPGATGSEMQKNGVVHSCS
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacagagttcctgctgtgcccgatctgcacacagaca
tttgaggagactgttcgccggcccatcagcttgggctgtggacacactgtctgcaagatg
tgcctgaacaagttgcaccgtaaggcctgtccctttgaccagacagccatcagcacagac
atcgagcagctacctgtgaacactgccctgttgcagctggtgggaggccaggttcctaag
gttcagccagtggccttgattaccagtccagaggactcacagcattatgaggaggccagg
cagtgtgtggaggagctggccctctatctcaaacctctcagcaacaccagaggtgtggga
ctgagcagcacggcccagagcatgctgagtcgacccatgcagaggaaactggtaactctg
gtccactgccagctggtggaggaggagggccgtgttagagccatgagagctgcccgctct
ctgggtgagagaaccgtcactgaactcatcttgcagcaccagaatccacagcagctctcc
tccaatctgtgggccgctgtgcgtgcacgaggatgtcagtttctaggcccagccatgcag
gaggaagctctaaagttggtcctgcttgctctcgaggacggctctgcactgtccaggaag
gtgctggttctctttgtcgttcagaggcttgagccacgctttccgcaggcctcgaagacg
agcattggccatgtggtgcagctcctctacagagcctcctgcttcaaggtgaccaaacgt
gatgaagattcatctctgatgcagctgaaagaggaattccgtacttacgaggctttgcgg
cgcgagcatgactctcagatagttcagatagccatggagggcgggctgcgcatcgcaccc
gaccagtggtcctctctgttatatggagatcaatctcacaagtcacacatgcagtctatc
atagataagctgcagacgccggcgtcttttgcccagagtgtccaggagctgacgattgca
ttgcagaggaccggagacccagccaacctcaacaggctgcggccccacctggagctgctg
gccaacatcgatcccagtcctgacgctcctccccccacatgggagcagcttgagaaaggg
ttggtagcagtgaaaaccgtggtgcacggtctagtggacttcatccagaaccacagcaag
aaaggaactgaccctcaacagcctcctcagcacagcaagtacaagacatacatgtgtcgc
gacatgaagcagaagggaggctgtcctcgtggagccagctgcacctttgctcattctcag
gaagaactggaaaagtatcggaaaatgaataagcgcttggcagctcgcctccccggctca
ggggggctcatgtcggatgagggtcttcctcttgacgtagaagtgacccgaaagccttcc
cctctcaccaatggtagcggtggaccttccttgccccagctcattgcccgtggcactgac
acagtcccgtatgaactgttgcgtaaacccatgaagatggatggagggagtcccagtgcc
ccggggtcaccacctgatggcatggaccctgcgctgcccaaacctggtatgcctttgcca
cctcacgtcatggcccactcaaggatgccagtggaccacctctctggggtgaagcacatg
cctgtggtcgccagaggttcaccggcctacccccaggccccgctccctgagatgtgctat
gacactcgcccaccaccgtccgcttctcagtacgacccccctcaataccccacagggtac
ccttaccaacagccaccacagtatgtccctcgggattacatgcgtaaccctcctcccccc
agtgagtcagggcccccttaccaggacccctatcctggctatggccctccagagcgctcc
taccaggcccctcactctggtccacctttctcttaccctcaccctccgcaccatgaccga
ggtcgccacgggagctaccctggcccgccgcctcccccacagccttacccatcacagagg
gatggcctggtcagaatgagtcccgctcctcttgatatgcccccaccatcagcaggacag
actaactccctctaccaccaagagcccagttcccgtgatagataccctccagatggctac
tatacaccgggtgcccagcctccacccgtgagggcttacgtcagggggtcatcatatagt
agttcacagcccagccttgactacctgcaccgacgccggcaggagctgttatcacagctg
gaggagaggaaggtcatatcccctccacccttcgctgcctcccccactcttcctcatccc
tttcccagcgactaccctccagagtatggcgaggagaactccaaaaccatggtgaaccgc
agagagcctgagtatgcagggcagtactctccctggtcttgtgaaacgattggctcctac
atcggtacaaaggaccccaaacccaaagatgttatggttcctggtaccatggacatgatg
aatgcagaggcaaagagtctgagggaagcgtcactggaggcgcctcggaggggtgcagaa
gtgaaagatgatgacccgatcatcccatttggcccccagcccactgtatcacgcttcggt
gccatctcccgcacctcaaagacgggctaccagaccacaggccctgtgcaggctatggcc
tcctctcctcagaacccaagctctaaacacatggccatgccagcagaatacacatacgga
agccatggaggatggggcggagcttcatacccctcacaccagactgcctcctcctctcag
ggacacttcagtgaacgtctgccgatggcggctccagacagagaacagttaaagattgag
ctgcagcaggtcaaccagcagatcaaccagcagacccagatgcggagcatggaggctgcc
aataactctttactgctgcagagggaggccggtgcgttggcaggccagcccgtgcagccc
ggccagggccaggctcaacagcagcccaagtggccggcagtgggagccagtacagcagct
gtctccagtgaacagctcagcctggagctccaccaggtggagagagagattggcaagagg
acccgggagatggctttggaaaaccaagtaacccatgatgttcagcagtataagattaaa
cctgcagagaatggacaaccagagcataagactcagctagaagaaatctccctggctctt
ggcgaggtgtcaaacggctccaacagcctgcaagacagtgcagtgggcgggtccatgctg
tcactgaccaataagacgtctgctttgggcttgtgctctgatccaggtgccactggttca
gaaatgcagaagaatggcgtcgtccattcctgctcatag
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integrated database retrieval system
