Pseudoliparis swirei (Mariana hadal snailfish): 130198001
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Entry
130198001 CDS
T09868
Symbol
lrrc8da
Name
(RefSeq) volume-regulated anion channel subunit LRRC8D
KO
K22038
volume-regulated anion channel
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130198001 (lrrc8da)
Ion channels [BR:
pswi04040
]
Chloride channels
Chloride channel, volume-regulated (VRAC)
130198001 (lrrc8da)
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Gene cluster
GFIT
Motif
Pfam:
Pannexin_like
LRR_8
LRR_14
LRR_4
LRR_1
LRR_9
LRR_R13L1-DRL21
LRR_5
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
130198001
NCBI-ProteinID:
XP_056277001
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Position
8:11330524..11341117
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AA seq
850 aa
AA seq
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MMFTLTEVASLNDIQPTYRILKPWWDVFMDYLGLVMLMLAIFAMTMQITKDQVACLPCLE
DSEDTSGATPDSFTQQSEQKASSPAATVSSAMPLITKDLPDEVVHEIHAMHQQHTAAVAE
KYSNQPQPTGIRTNLDFQQYVFINQICYHVALPWYSKYFPYLTLIHTIVLMVSSNFWFKY
PKTSSKIEHFVSILGRCFESPWTTKALSETACEDSEENKQRLTGASTAPKQVSLEGKDDG
TNVNSSTPMLGVRFSADKPIAEVPSSMTILDKKDGEQAKALFEKVRKFRAHVEDSDFIYK
LYVAQTVVKTVKFILILSYTSTFLAKIHFKHDCEPDIKQLTGYRKFFCTHNMAFMLNKLL
ISYMALILIYGMACLYSLFWVFRRPLKEYSFEKVREESSFSDIPDVKNDFAFLLHMVDQY
DQLYSKRFGVFLSEVSENKLREISLNHEWTFEKLRQLVTRNALDQQELHLFMLSGLPNAV
FDLTDLEVLKLELIPEVKFSAKVSQMTSLLELHLCHCPAKVEQTGFAFLRDHLRCLHVKF
TDVAEIPTWVYLLRSLRELNLIGNLSSENNKMIGLESMRDLRHLKTLCLKSNLTKMPSNI
TELSPHLIKLIVHNDGTKLMVLNSLKKMINLIELELHTCELDRIPHAIFSLTNLQELDLK
SNNIRTIEEIISFQHLKRLTCLKLWNNKIITIPSSIGQVKSLESLHLSHNNLETLPPALF
TLPKLRHLDVSHNSIAVLPPDVGLLHNLQHLAINSNKLEVLPKALFRCTKLKALYLGNNA
LTVLPETVGQLVQLTQLELRGNCLDKLPVQLGNCRQLRKSGMIVEDHLFDALPVEVKENF
SRENNFTSGL
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgatgttcacgctcactgaggtcgcgtccctgaatgacatccagccaacgtaccgcatc
ctgaagccatggtgggacgtcttcatggactacctggggctggtcatgctcatgctggcc
atattcgccatgaccatgcagatcaccaaggaccaggtggcctgccttccgtgtctggag
gactcggaggacacctcgggagctacacccgactcgttcacgcagcagagtgaacagaaa
gcgtcctcaccggcagccaccgtgtcatccgccatgcccctcatcacgaaggacttacca
gacgaagttgtccatgagatccatgccatgcaccaacaacacactgccgcggtcgcagag
aaatattccaatcaaccgcaaccgacaggcatcaggaccaacctggactttcaacaatat
gtcttcatcaaccaaatatgttaccatgttgccttgccctggtattccaagtactttcct
tacctcacactcatccacaccattgttctcatggtcagtagcaacttttggttcaaatac
cccaaaacgagctcaaagattgagcattttgtgtcgattctaggtcgatgctttgagtct
ccctggaccacgaaggctttgtctgaaacagcttgcgaggactccgaggagaacaaacag
cggttgaccggcgcctccactgcaccgaagcaggtatctttagaggggaaggatgatggg
accaatgtcaactcctccacacccatgctcggggtgaggttctcagcagataagcccatc
gcagaggtaccaagtagtatgacaatcctggacaagaaagacggggagcaggccaaagcc
ttgtttgagaaagtaagaaagttcagagctcacgtggaggacagtgatttcatctacaag
ctttatgtagcacagactgtggtcaaaactgtcaagttcattttgatactatcctacact
tcaacctttttggctaaaatacattttaagcacgattgtgaacctgatatcaaacagcta
acggggtacaggaagttcttctgtacccacaacatggcgttcatgctaaacaagctgctc
attagctacatggctttgattttgatctacgggatggcttgcttgtactcgctcttctgg
gtgtttcgacgaccactgaaggagtactcattcgagaaagtccgggaggagagcagcttt
agtgacattcctgatgtcaaaaatgactttgcattcctcttacacatggttgaccagtat
gaccaactctattccaaacgctttggtgtcttcttgtccgaggtcagcgaaaacaagctg
agggagatcagcctcaatcacgagtggacctttgaaaaactcaggcagcttgtgacccgt
aacgcactggaccagcaggagctgcatcttttcatgctctctggtcttccgaacgcagtg
tttgacctcacggacttggaagtgctgaaactagagctgattcctgaggtgaagttttcg
gcaaaggtctcccaaatgaccagcctgctggagctgcatctctgccactgtccggccaaa
gtagagcaaacggggttcgctttcctccgtgaccatcttcgctgccttcatgtcaagttc
actgatgttgctgagatcccaacgtgggtgtatttgctgaggagtttacgggaacttaac
ttgatcggcaacttgagctcagagaacaacaaaatgattggcctggagtccatgcgagat
ctgaggcatttaaagacgttatgcttgaagagcaacctcacaaaaatgccgagcaacatc
acggagctgtccccacatctgattaagctcatagtgcacaacgacggcacaaaactgatg
gtactaaatagtctgaaaaaaatgattaatctaattgaactggagctgcacacctgcgaa
ctggacaggattccccacgccattttcagcttgaccaacttgcaggaactcgacctgaaa
tcgaacaacatccgaactatagaggagatcatcagcttccagcatctcaagaggctgacg
tgtcttaaactgtggaacaacaaaatcatcaccatcccatcctccatcggccaggtcaag
tctctggagtctctccacctctctcacaataacctggagactctgcctccggccttgttc
actctgcctaagctgcggcacctggacgtgagccacaactccatcgccgtgctccctcct
gatgtgggtctcctccacaatctgcagcacttggccatcaactccaacaagctggaggtg
ctgccgaaggctctgttccgatgcaccaagctcaaggcgttgtatctggggaacaatgcg
ctcaccgtgctgccggagactgtgggccaactggtgcagctcactcagctggagctgaga
gggaactgtctggacaaactgcccgtccagctggggaactgccgccagctgcgcaaaagc
ggcatgatcgtggaggaccatctctttgacgcactgcctgtggaagttaaggagaacttc
agccgagagaacaactttacgagtggcttatag
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