Pseudoliparis swirei (Mariana hadal snailfish): 130198004
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Entry
130198004 CDS
T09868
Symbol
gtf2b
Name
(RefSeq) transcription initiation factor IIB isoform X1
KO
K03124
transcription initiation factor TFIIB
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130198004 (gtf2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pswi03021
]
130198004 (gtf2b)
Transcription machinery [BR:
pswi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
130198004 (gtf2b)
Prokaryotic type
Archaeal type
TFB
130198004 (gtf2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Cyclin_C
KIF9
Sigma70_r4
RB_B
BRF2-like_C_cyclin_rpt
Motif
Other DBs
NCBI-GeneID:
130198004
NCBI-ProteinID:
XP_056277009
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All DBs
Position
8:complement(11320097..11327785)
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AA seq
343 aa
AA seq
DB search
MSDKFAQMLHTQQNLRKLCSRVRSNMASTSRGDVQQLPRVQCPNHPDAILVEDYRAGDMI
CPECGLVVGDRVIDVGSEWRTFSNEKALKDPSRVGDAQNPLLNGGDLTTMISKGTGAASF
DEFGNSKYQNRRTMSSSDRAMLNAFKEISTMADRINLPRNIIDRTNNLFKQVYEQKSLKG
RANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGD
FMSRFCSNLGLPKPVQMAATHIARTAVDLDLVPGRSPISVAAAAIYMASQASAEKKTQKE
IGDIAGVADVTIRQSYRLIYPRAVELFPTDFKFDTPVDKLPQL
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgtcggataagtttgcccagatgctgcatactcagcaaaatctgcgtaagctctgtagc
agagtgagaagcaacatggcgtcaacaagccgcggagatgtccagcagcttccaagagtt
cagtgtcccaaccaccccgatgccatactggtggaggactacagagcaggggacatgatt
tgccctgaatgcggccttgtagtaggtgaccgtgttatcgacgtcggctcagaatggaga
acgttctccaacgagaaagccctcaaagatccatccagagtgggagacgcccagaacccg
ctgctcaacgggggcgacctcaccaccatgatcagcaagggaaccggcgccgctagtttt
gatgaatttggtaactcaaagtaccagaaccgtcggaccatgagcagctctgaccgggcc
atgctcaacgcgttcaaagaaatcagcaccatggcagaccgcatcaacctgccgaggaac
atcatcgaccgaacaaacaacttattcaagcaggtttatgaacagaagagcctgaagggc
cgagccaatgatgccatcgcctcggcctgcctctacatcgcctgccgacaagaaggcgtg
cccagaacatttaaagagatctgcgccgtctctcggatctccaagaaggagatcggcagg
tgcttcaagctgatcttgaaggcgctggagaccagcgtggacctcatcaccaccggggac
ttcatgtcccggttctgctccaacctgggcttgcccaagccggtccagatggcggccacc
cacatcgccaggacagccgtggatctcgacctggtgcccggccggagccccatctccgtg
gcggcagccgccatctacatggcctcccaggcctccgcagagaagaagacccaaaaggaa
atcggggacatcgccggtgttgccgatgttacgatcagacagtcataccgactcatctac
ccacgcgctgttgaactcttccctacagacttcaaattcgacacacctgtcgacaagctg
ccccagctgtga
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