Pseudoliparis swirei (Mariana hadal snailfish): 130198106
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Entry
130198106 CDS
T09868
Symbol
rb1cc1
Name
(RefSeq) LOW QUALITY PROTEIN: RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130198106 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pswi01009
]
130198106 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130198106 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
pswi03029
]
130198106 (rb1cc1)
Protein phosphatases and associated proteins [BR:
pswi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130198106 (rb1cc1)
Membrane trafficking [BR:
pswi04131
]
Autophagy
Autophagosome formation proteins
ULK complex
130198106 (rb1cc1)
Mitochondrial biogenesis [BR:
pswi03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
130198106 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
130198106
NCBI-ProteinID:
XP_056277166
LinkDB
All DBs
Position
8:complement(5433133..5448625)
Genome browser
AA seq
1624 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTDLAVQTVLELKHAIQAKYKIAVQHQVLVVNGGECMVAERRVC
SYSAGTETNPIFLFNKEMILCDRDPTIPKTTFSIESEIQVKVEESLLMPAVFHTVASRTQ
LALEMFEVAKKLCTFCERLVHDEHMQHQGWAAIMANLDDCASSYQKLLVKFDSSYSNYQH
DLEEIKIKLSKLGTSVSVMARIPLLECLTRHSYRESMDKSSSTPGKDSDGTEEDKSTDSV
RCATDAQRPAKSPASSAASGTARCEPPGHQETPKMTDSSGLRAARLDDDDDEDDDDDEDD
DDDDDSPEFTNPSCFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLTDCRD
TISKLDNQNMKAIKGLEDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVL
PDLCLSHTNQLMIMLNNHRKLLDIKKKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKL
QALLRLLTELIERVRVVDALSTVPQMYCLAVVEVVRRKMFMRHYREWAYALVKDGKRLYE
VEKFKRESFGKLFRKSFLRNRLFRGLDSWPPTSFCTRKPRRFDDELPDISLDDLQYLKSC
CPLEVQPFLMLPTMCDFEPLNRHVETLHRLVQAAQSVDEMSQTITDLLSEQRISFSQRSS
MMTPQSGSGPGSTTPRSSNTPCSLSLQGPSCQPPLVPAPAPLEDLSPDSIDAQTFDFETI
GHPNMDPVLQQGSLDLDSLAESPESDFMSAVNEFVIEENLTSPNPISDPVSPEMMVESLY
SSVINAIDNKRMQDTTILERENSRITGLKQVIDKYRSAAEESHSNFRSVKDDLHHLRGVV
LKEQHDFGFVLGNLTTEVSDVVDGICQAQQLELKEQHQSELLSLRQALETQVTTLTEENR
VNQNIVRDVQRAMLELEGLMERKEKELAQLENAKERCAVTQSNQTERIKTLEQAASDQTE
EIETLSTSRDALTGQLENLHVEMERGRQQIRQELEDAERSHLRETEERMNREHAAKLETL
AEASREALEHLAAGNSATLSETAERHAAALREKEKQTEDLEARVAELAELRCKAEVELAF
KESETEELRLAFEEAEAQRAEAATRVLSEELADVKEQLRVRNEEYEADLAERRSLASLER
DRRVSELAAAREEEATLLRNELIALQRQVQEADKNHGEQQQALERAFEQRAAALSXKRDE
RSASSKELERELRTVIGDLQADNDLLSEKLEQDRRATERDLGKELTSRAASPDALKELEQ
QKKNTEKRLSDKIRHLEDELHGRQSSRSDYGLPLHAEVRADAGAPLSLDSALQERMQQER
ACLHSQMDLLEKKKNEEMQNLRTSLIAEQQTNFNTVLTREKMKKEQIINELTEKWRTVTQ
QQEKDKALIETLSEDRACVMQEKKHLEEELNRLRSAALVSSAFFSPHPSGQEVSDARALP
VAGAFSSEPAAESQRLASVSAIPEDELVDSAVEASMVTDHDDVLMSEERQRILLLERTLH
MKEEENKRLSQRLMSQSMSSVSSRHSDKIAIRDFQVGDLVLIILDERHDNYVLFTVGPTL
YFLHSESLTELDLKPATGTSRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPW
NRKV
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggcagcacattgacatttgacactgatctt
gctgtacaaactgtactggagcttaaacatgccatccaagccaaatacaagattgcagtt
caacatcaagtccttgttgtcaatggaggagaatgtatggttgcagagaggcgtgtctgc
agctacagtgctggcactgaaaccaaccccatattcctgttcaacaaagagatgatcttg
tgtgaccgggatccaacgatccccaaaaccacattctcgattgagagtgagatccaggtt
aaagtagaggagtctctactgatgccagctgtctttcacactgttgcctcgcgaacacaa
cttgctctggaaatgtttgaagttgccaagaaactttgcactttctgcgaacgattggtt
cacgatgaacacatgcaacaccaaggctgggctgccattatggctaatctggacgactgc
gcttcatcttatcaaaagttgctcgtcaaatttgacagttcatactcaaactatcaacat
gacttggaggaaattaagatcaaactctcaaagttagggacatcggtctctgtaatggcg
aggatacctctgctggaatgtttgacaagacacagttacagagagagcatggataagtcg
agttcaaccccagggaaggattcagatgggacggaagaagacaaatccacagactctgtg
cgctgcgctactgatgctcaaaggcccgccaagtcaccagcctcctccgctgcttcgggg
acggccaggtgtgagccacctggacaccaggaaaccccaaaaatgactgacagtagtgga
ctgagagctgcacgacttgatgatgatgacgacgaggatgacgacgacgacgaagatgac
gacgatgatgatgattccccagagttcaccaacccgtcctgcttcaatgtcacactatta
gactggatcaatgtgcaagaccgacccaacgacgtggaatcggttgtgaggaagtgcttt
gactccatcaataggctcgaccctcgtattattcaacccttcctcacagactgtcgtgac
acaatttccaagctagataatcaaaacatgaaagccatcaaggggctcgaggacaggttg
tatgctctcgaccaaatgattgcaagctgtaagaagttggtgaatgaacagaaagaactt
gctcagggatttctggccaatcagaagcgggctgagaacctgaaggatacatctgttctg
cctgatttgtgtctgagtcacaccaaccagctgatgatcatgctgaacaaccacaggaag
ctgctcgacattaaaaagaagtgcaccaccgccaagcaagagctcgcaaacaaccttcaa
gtcagactcaaatggtgctgctacgtgatgcttcatgcagaccaggacggggagaagctt
caggctctcctcagactcctgacggagctcatagaacgagtgagggtggtggacgccctc
agcactgtgccccagatgtactgcttggcggtggtggaagtcgtccggcgaaaaatgttt
atgcgccactacagagagtgggcctacgcgctcgtgaaggacgggaaacggctgtacgag
gtggagaagttcaaaagggaatccttcggtaaactcttcaggaagtctttcctcagaaat
cgtctgtttagaggactcgattcatggcctccaacatcattttgtacacggaagcccaga
cggtttgacgacgaacttccagacatctccctggatgacctgcagtacttgaaatcgtgt
tgtcctctcgaggtgcagcccttcctgatgcttcccacaatgtgtgacttcgagccctta
aatcgccacgtagagacgcttcaccggctggtccaagctgcacagagtgtggatgagatg
tctcaaactattaccgacctgctaagtgaacaacggatatccttcagtcagagatccagc
atgatgaccccacagtccggaagcggacccgggtccacgacgccgaggtcctcaaacacc
ccgtgctccctcagcctgcaggggcccagctgccaaccgccgctcgttcccgccccggca
ccgctagaggacctctccccagacagcatcgacgcgcaaacgtttgactttgaaacgatc
ggccacccgaacatggacccggtcctgcagcagggctccctcgacttggattccctcgca
gagagccctgaatctgacttcatgtcggccgtcaacgagtttgtgatcgaagagaacttg
acctctccgaaccccatcagcgaccccgtcagccccgagatgatggtggagtcgctgtat
tcgtcggtcattaacgcgatcgacaacaagcgcatgcaggacaccacgatactcgagagg
gagaactcgaggatcaccgggctcaaacaagtgatcgacaagtaccgatctgcggcagag
gagtcgcactccaacttcagaagcgtgaaggacgatctccatcacttgagaggcgtggtt
ttaaaagaacaacacgactttggctttgttttgggaaatctgaccacagaggtgagcgac
gttgtggacggcatctgccaagcccagcaactggaactgaaggagcagcatcaaagtgaa
ctcctctcgcttcggcaagcgctcgagacgcaggtcacgacgctaacggaggagaaccga
gtgaaccagaatatcgtccgagacgtccagcgcgcgatgctggagctggaggggctgatg
gagcgcaaagagaaggaactcgctcagctcgagaatgcgaaagagcgctgtgccgtaacg
cagagcaaccagacggaaaggatcaaaaccctggagcaggcggcgagcgatcaaaccgag
gagatcgagacgctctcgacttcgagagacgccctgaccggccagctggagaatctccac
gtcgagatggaacgcggccggcagcagatccggcaggagttggaggacgccgagcggtct
cacttgagggagacggaggagaggatgaatcgagagcacgcggcgaaactggagaccctc
gccgaggcgagccgggaggctctggaacacctggccgccggaaatagcgcaacgttaagc
gagacggccgaacgccacgccgccgcgcttcgagagaaggaaaagcaaacggaggacttg
gaggctcgcgtcgccgagctcgcggagctccgctgcaaagcggaggtggagttggccttc
aaggagtcggagacggaggagctgaggctcgcgttcgaggaggccgaggcgcagcgggcc
gaggcggcgacccgagtcctgagcgaagagctggccgatgtcaaagagcagctgcgcgtc
aggaacgaggagtacgaggcggacctcgcggagcggaggagcctcgcgagcctcgagagg
gaccgccgcgtctctgagctggcggccgcgcgcgaggaggaggcgaccctgttgcgcaac
gagctcatcgccctgcagcggcaggtccaggaggccgataagaaccacggcgagcagcag
caggcgctggagcgggcgttcgagcagcgagcggcggcgctgagcnngaagagagacgag
cgatccgcgagctccaaggaactggagcgagagttgaggaccgtcatcggcgatttgcag
gcagacaacgacctgctctccgagaaactagagcaggaccgacgagcgacggagagggac
ttggggaaagagttgacctccagagctgcgtcaccggacgctttgaaagagttggagcag
cagaagaagaacacggagaagagactgtcggacaagatccgacacctggaggacgagctt
cacgggaggcaatcctccagaagtgactacgggttgccgctgcacgcggaggtgcgcgcc
gacgccggcgcgccgctgtctctggactcggcgctgcaggagcggatgcagcaggagagg
gcgtgcctgcactcgcagatggacctcctggagaagaagaagaacgaggagatgcagaac
ctcaggacatcgctcatcgccgagcagcagactaatttcaacaccgttctaacccgagag
aagatgaagaaagaacagatcatcaacgagctgacggagaagtggcggacagtcacccag
cagcaggagaaggacaaagctctgatcgagacgctctccgaggaccgagcgtgcgtcatg
caggagaagaagcacttggaagaggagctgaaccgcctgcgcagcgccgcgctggtgtcg
tcggcctttttctcgcctcacccctccggtcaggaggtctccgacgcccgagctctgccc
gtcgccggggccttttcctccgagcccgcggctgaaagccagcgcctggcctctgtgtcg
gccattcccgaagacgagctggtggattcggccgtggaggccagcatggtgaccgaccac
gacgacgtcctgatgtccgaggagaggcagcggatactccttctcgagaggactctacac
atgaaggaagaggagaacaagcgcctcagtcaaagactgatgtctcagagcatgtcgtct
gtgtcgtcacggcactcagacaaaatcgccatcagagatttccaggtaggcgatttggtt
ctcatcatcctggatgaacggcacgacaactacgtgctgttcaccgtcgggcccacgctc
tacttcctgcactcggagtctctcaccgaactggacctcaaaccagcaacggggacctca
agacggccgtgggtgcttggaaaggtgatggagaaggagtattgccaggcaaaaaaggca
cagaaccggttcaaggttcctttaggaaccaagttctacagagtgaaagctgttccatgg
aacagaaaagtataa
DBGET
integrated database retrieval system
