Pseudoliparis swirei (Mariana hadal snailfish): 130198294
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Entry
130198294 CDS
T09868
Symbol
carmil3
Name
(RefSeq) LOW QUALITY PROTEIN: capping protein, Arp2/3 and myosin-I linker protein 3
KO
K20493
leucine-rich repeat-containing protein 16
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130198294 (carmil3)
Membrane trafficking [BR:
pswi04131
]
Others
Actin-binding proteins
Nucleation-promoting factors (NPFs)
130198294 (carmil3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARMIL_C
Carm_PH
LRR_6
Sec66
Motif
Other DBs
NCBI-GeneID:
130198294
NCBI-ProteinID:
XP_056277394
LinkDB
All DBs
Position
8:18727806..18805089
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AA seq
1347 aa
AA seq
DB search
MASKDTSLAGFVNVSREITESIRKALDKQAIRFVRAIKQDARGGKTEDRILVLATWRLYL
FAVKVPTKMEVTFNFLEIRAMNTYPEHQVVIDTDKTTYSLRLQTQDQLDHMVKHINSALS
RVFNNSIYAPPICRAESDLTEEGSHTFSPNSELSVEAQKTCGGFSETYAALCDYNGIGCK
EEVQWDVDTIYHSQDNREFNLLDFSHLDSRDLAVIVAAIAYNTWFTKLHCKDMRLGSEVV
DQVLHTVSKSNRLEELTLENAGLKSDFPQKMASALSENPASVIHSLNLSHNTLDNQGVSN
LIQQVCRLNKGLRLLNLSKTSLSSKGIVTLSQALCSSDDYSNSLLHLDLSKNPGVLSGED
ATNLYMFLAQPNCLVHLDLSGTDCIVDSLFGALLRGCCADLSYLNLSKNSFSHRKARDSL
PTFRQFFSSAFSLTHVSLASVRVPPDSLRALFLGLSNNPHISDLHLDISGCELRSAGAGV
MQELFPRVSCVGTLDISDNGLDADLLVVIPAFSRHPSLKHLMLGKNFNIKGRVLDETLQK
LVHLVQEEECALQSLSLADSRLRQRGTVLVNALGSNACLRKVDLSGNLLEDSGAKMLSKA
LQINTTLRSVMWDRNNTTAIGLQDVARALEHNFTLQYMPLPLGDVTQAYRGAPEKTDQAL
TRIQRALLRNNQTHSFSQKQALRLNQGLVTSTAEQVMERLCVRXQQQVCVLKGSEEGEEL
QSARQILKEARDSKALYPSLCELAHVLSVDGPVKQRLDTLAGELAKAADKELQVVVDSMV
SLCRELCPMSCLAAERLSTPLSSISEQVSIPRSAIRSALMERAAEDINRALEEVKLSVVS
YLTNSIMDQILQELYTTHKTLLRQVSQVKRCDDGGTGRRTIRQSRMMESLDFPDEDLGVN
LGIDTMAIKKRSSRTRRIRPVSTRQSLEEPSPSPTPSAPPPSAPLTHSASWECLSTLPTN
GSPLRHVTHVRPHPPRRHRAGHPSPESHCSENGGVSMLEDGLPDFYSKRVLPDSQLSCLH
QGQSLRRKKRRSVLSIFTGFRKNRNSTVSNQDSDASENVYSMIQHPKEAGRPEGTGTGMR
AASPSCLIQRQSTDLVSMVYSCIGAEIEDSDGSSSCDVREMDEHEADRTAAASAAPADAP
TNGRAASSSSSPSSSSSTHHTDRRAESRPERVAPPMVPEEEREGVGSGGARPEPPPQSIK
PSLAAMRQQHLQDNLEEAGRLQGEGDQSESRPEEKRRGPEGQRPPPPGKPGLHLPRDDTS
PRASPVGPGEEATDGRRSPPPPARPIAGEEGAADGGESPAAAGVEAADAVSEDEEEGDDG
AAARHTRKSDSFDIGDESPRPADGDVL
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atggcctcaaaggacacctctctggcgggcttcgtcaacgtcagcagagagatcacagag
agcatcaggaaggccctggacaagcaggccatcaggtttgtgcgagccatcaagcaggac
gccaggggcggcaagacggaggaccggattctggtcctggccacatggagactctatctg
ttcgctgtcaaagttcccaccaagatggaggtgaccttcaacttcttggagatccgagcc
atgaacacctatccggagcaccaggtcgtcatcgacacagacaagaccacgtactcgctg
aggctgcagacccaggaccagctggatcacatggtcaagcacatcaactccgccctctcc
cgagtcttcaacaactccatctatgctcctcctatttgtcgggcagagagcgacctgacg
gaagaaggaagtcacacgttttcaccaaactccgaattgtcagttgaggcccagaaaaca
tgcggaggcttctccgagacctacgcggctctttgcgactacaacggcatcggctgcaag
gaggaggtgcagtgggatgttgacaccatctaccactcacaggacaacagggagttcaat
ttactggatttcagccatctagacagcagggacttggcagtgatcgtggcagccattgcg
tacaacacctggttcaccaagctgcactgcaaggacatgcgcctagggtcggaggtcgtg
gaccaggtcctgcacacagtcagcaagtccaaccgtctggaggagctcactctggagaac
gcgggactcaaatcggatttcccgcagaagatggcgtcagcgctgtcggagaaccccgcc
tcggtgattcactccctcaacctgtctcacaacacgctcgacaaccaaggagtctccaac
ctcattcaacaagtgtgccgcctcaacaagggactgcgcctcctcaatctctccaagacc
tccctgtcctccaaaggtatagtgactctgtcccaggcgttgtgttcaagtgacgactac
tctaattctctgctgcatctggatctcagcaaaaaccccggggttctgtccggagaagac
gccacgaacctgtacatgttcctggcccagcccaactgcctggtccacctggacctgtcc
gggaccgactgcatcgtggactcgctgtttggggccctgctgcgaggctgctgcgctgac
ctctcctacctgaacctctccaagaactccttttctcacaggaaagcgagagattctctg
ccaactttccgccagttcttcagctccgcgttcagcctgacccacgtcagcctggcctcc
gtgagagtcccgcccgactcactgagggccctgttcctcggtctgtccaataaccctcat
atctctgacttgcacctggacatcagcggctgtgagttgaggtcggcgggcgccggcgtg
atgcaggagctgttcccccgggtttcatgcgtggggactttagacatctctgataacggt
ttggatgctgacttgctggttgtcatcccggcgttctcccggcacccctccctcaaacac
ctgatgctggggaagaacttcaacatcaagggcagggtgctggatgaaactctgcagaaa
ctggttcatttggtgcaagaggaagagtgtgcgctgcagtccctctccctggccgactcg
aggctccgccagcggggcacggtgctggtcaatgccctgggctccaacgcctgcctgcgg
aaagtggacctgagcggcaacctcctggaggactccggggccaagatgctcagcaaagcg
ctgcagatcaatacaacactcaggagtgtgatgtgggatcgcaacaacaccacagcgata
ggcctgcaagatgtggcgagagcgctggagcacaactttacccttcagtacatgcccctc
cccctcggtgatgtcacccaggcgtaccgcggcgccccggagaagacggaccaggccctg
accaggatccagcgcgccctgcttaggaacaaccagactcatagtttctctcagaaacag
gctctccggctgaaccagggcctcgtcaccagcaccgctgaacaagtgatggagcgtctg
tgcgtgcgcnngcagcagcaggtgtgcgtcctgaaaggcagcgaggaaggcgaggagctc
cagtcggccaggcagatcctcaaagaagcccgggactcgaaagctctgtacccctccctg
tgtgagttggcccatgtgttgtcggtggacggccccgtcaagcagcgcctggacactctg
gctggagagctggccaaggcggccgacaaagagctgcaggtggtggtggactcgatggtg
tccctgtgccgagagctgtgtccgatgtcctgcctggcggccgagcgactcagcacgcct
ctctcgtccatttccgagcaagtctcgatccctcgctccgccatccgcagcgccctgatg
gagcgcgcggcggaggacatcaacagagccctggaggaggtgaagttgtcggtggtctcc
tacctgaccaactccatcatggatcagattctacaggagctgtacaccacccataaaacc
ctgctgaggcaggtgtctcaggtgaagcgctgtgatgacggcgggacggggcggcgcacc
atcagacagtccagaatgatggagtctctggattttcctgatgaggacttgggcgtcaac
ctgggaatagacacgatggccataaagaagaggagctcccgaactagacggatccgtccc
gtctccaccagacagagtctggaggagcccagtccctctccgacgccctctgccccaccg
ccctccgcccctctcacccactcggcatcgtgggagtgtctgtccaccctgccgaccaac
ggctcgccgctgcgccacgtgacccacgtccggcctcacccgccgcggaggcacagggcg
ggccacccttccccagaatctcattgttcggagaacggaggagtcagtatgctggaggac
ggactgccggacttctacagcaagagagttctacctgacagtcagttgtcgtgcctccat
cagggccagtcgctgaggagaaagaaaagacgcagcgtcttgtccattttcaccggcttc
cgcaagaaccgcaactccaccgtctccaatcaggactctgacgcctcggagaacgtctac
tcgatgattcagcacccgaaggaggccggcaggccggagggcaccgggaccgggatgagg
gccgccagcccctcctgcctcatccagagacagtccacagacctggtcagcatggtgtac
agctgcatcggggccgagatcgaggactcggacgggagcagcagctgcgacgtccgagag
atggacgagcacgaggccgaccgaacggccgccgcctccgccgcacctgcagatgctccg
actaatggccgcgcggcgtcctcctcttcctccccctcctcctcctcctccacccaccac
acggacagacgggcggagagccggccggagcgggttgcgcccccgatggtcccggaggag
gagagggagggcgttgggagcgggggcgcgaggccagagcctcctccgcagagcatcaag
cccagcctggctgctatgaggcagcagcacctgcaggacaatctggaagaggcgggccgg
ctgcagggggaaggagaccagagcgaaagccggccggaggagaagcggcgagggccggag
ggccagcgacctccgccgcccggcaagcccgggctccacctcccgcgggacgacacctct
cccagagcctcgcctgtgggtccgggcgaagaagcgaccgatggccggaggagcccgcct
cctcccgctcggccaatcgccggagaggagggcgccgccgacggcggggagagcccagcg
gcggcgggcgtggaggcggccgacgccgtcagtgaagatgaggaagaaggtgatgacgga
gcagcagcgcggcacaccaggaagtccgactcgtttgacatcggtgacgagagcccccgg
ccggctgacggagacgtgctatga
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