KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130198426
Entry
130198426         CDS       T09868                                 
Name
(RefSeq) collagen alpha-4(IV) chain-like
  KO
K06237  collagen type IV alpha
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04382  Cornified envelope formation
pswi04510  Focal adhesion
pswi04512  ECM-receptor interaction
pswi04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130198426
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130198426
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    130198426
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    130198426
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pswi04147]
    130198426
   00536 Glycosaminoglycan binding proteins [BR:pswi00536]
    130198426
Exosome [BR:pswi04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   130198426
Glycosaminoglycan binding proteins [BR:pswi00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130198426
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 130198426
NCBI-ProteinID: XP_056277564
LinkDB
Position
8:complement(14901155..14924065)
AA seq 1617 aa
MGSSVSDVTLCPLRWILVLVVVMQQLSAGEIEGPCQGRDCSVCQCLPAKGARGAPGKPGQ
QGSGASMGPRGREGSTGEKGRRGAEGSHGPEGPKGDRGLQGSKGIKGEPLYGAIFRGLQG
DDGRDGLPGPPGRRGVIGPKGHLGFPGLLGPEGLEGPNGGRGRPGDPGGSLAGAKGDDGE
QGPPGPQGPEEVIEFPPDFLPPKGNKGDTGLPGQCGPKGISGGRGDTYSQDIKGEQGILG
FPGLRGIPGFPGRDGPLGPEGLRGEKGYPGLIGRNGPKGYPGDVGLPGPLNLHNGSDVRG
DKGDRGYPGRPGPHGDPGFMGMHGLPGPPGLTITEELGLPGPRGFLGPKGYKGEPGVYNN
FENLFPGLKGTKGLFGPKGVTGPPGPPDYFCEAGHPGDTGDIGHKGSPGNQGLKGIAGCI
GACDCRSAGGKEGPPGLAGYPGPPGLPGTQGLKGDPGLEGYEGPRGPHGFQGIPGLKGHK
GQKGHSFVVDAKGAKGNQGVLGYSGPPGAAGQPGLDGTLGPAGDHGPPGAGYAGLLGPKG
YPGVAGAKGFPGLRGPPGPGIPGSQGQPGPQGYEGLPGPSGIPGRPGPSGETAECCLEEE
IGSGFGQKGESGSPGIPGEPGRDGPPGSVGLLGPKGMKGDDRETGGIGQLGLQGLNGDPG
DPGPSGISLDGRPGLFGLPGLPGRKGDPGDVLSARPGAAGPPGRPGAQGTSGLRGIPGNL
GSHGAQGQPGRPGWKGEPGDNGDHGETGLPGPPCTLCELIGSPGPIGPPGNPGQTGVPGY
SGQKGFKGDIGPPGHGHRGPQGFPGPPGLPGLAGPRGPAGPSGDPGTDGWLGQKGESGYR
GRAGATGLPGHPGPAGPRGKQGERGFDGRLGDSGHQGQPGLKGVRGPPGLRGPSGILNIT
KGPSGLAGRKGQSGQQGPAGSKGPRGVPGDWGPDGWPGFPGLKGNTGAPGRTGRPGPVGY
PGFKGFPGPRGYSRPDGDLGDQGSRGLVGIPGSPGFPGAKGEPGTSHGTPGPLGPKGSPG
EDGPSASRGSSGDPGDPGHQGRPGQPGQRGVVGEPGRLGGPGFPGPRGPSGHPGVPGFPG
DYGGLGPPGPPGPYGPPGLPGPPGLDGLDGLRGPNGIKGQTGSCSPGTPGPDGLPGVKGL
RGQQGPRGAIPSGSKGQRGSPGPAGFPGFPGIPGNRGNKCSKPLPGPNGDLGYVGPPGPP
GPPGDPGPTGSSIFPKGDPGPNGLPGLPGRKGDRGLPGPPGSQSYPGFTGPKGEKGPPGP
RGSQRPKGQIGIPGPWGRKGLTGPAGDTGVKGATGDYYHMKAEGAPLGILGPRGHPGSLG
YPGDSGVPGTPGRKGQKGSIGFVGHPGKLGPAGHTGRVGDPGDAGQLGFAGPQGIPGPPG
DPGSQGQREALRSGFLLAIHSQSVQVPQCPAGSSQLWVGYSLVSLEGQEKAHAQDLGHAG
SCLPVFSTMPFSYCNKAACHYSSRNDKSYWLSTTAPIPMMPLSGPEISSHISRCVVCETV
SPAVAFHSQDHIVPPCPAGWRSLWTGYSFLLHTGAGDEGGGQSLTSSGSCLKDFRTHPFI
ECQGARGSCHYFANLYSFWLTTVSQTEQFVTQRPGTIKAADKQRRKVSQCHVCLREL
NT seq 4854 nt   +upstreamnt  +downstreamnt
atggggtcctcagtttcagatgtaaccctgtgtcctctcaggtggatccttgtcctggtc
gtcgttatgcagcagctcagtgcaggggagattgaaggcccatgtcaaggaagagactgc
tctgtatgtcagtgtcttcctgccaaaggtgcacggggagctccagggaagcctggccaa
caaggatcgggggcatcaatgggacctcggggacgtgaagggtcaactggcgagaagggc
agacggggagcagaaggatcacatggccctgaggggccaaaaggcgaccgcggattacaa
ggatctaaaggaattaaaggagaacctttgtatggtgctatcttccgagggcttcagggg
gatgacggtagagatggactgcctggtccacctggaagacgaggagtcattggacctaaa
ggccacttgggctttcctggccttcttggacctgagggcttggaaggacctaatggtggg
agaggacgaccaggcgaccctggaggatcactggcaggagctaaaggtgacgatggtgag
caaggcccacctggcccacaaggaccagaagaagtcatagaatttcctccagacttcctt
ccacccaaaggcaacaagggagacacgggtcttcctggacaatgtggaccaaagggcata
agcggtggcagaggagacacatacagccaagacataaaaggagagcaaggcatcctaggt
tttcctggattaaggggtattccagggtttcctggaagagatggacctttaggaccagag
ggtttgcgtggagagaaaggatatccaggtctcattggaagaaatggaccaaagggctac
ccaggagatgtaggactccccggacccctgaaccttcacaatggaagtgacgtcagaggt
gataaaggtgaccgagggtatcctggaagacctggaccccacggtgaccctgggttcatg
ggcatgcatggacttcccggcccaccagggttaacgataacagaagagttgggtctgcct
ggtccacgagggttccttggtccgaagggctataagggagagccaggggtgtataacaac
tttgaaaatctgtttccgggactaaaggggactaaaggactcttcggacccaaaggtgtc
acaggccctccaggtcctccagattacttctgtgaggctggtcacccgggagacactggt
gacataggacacaaaggatctcctggaaaccaagggctcaagggaattgcaggttgtata
ggggcatgtgactgtaggtctgctgggggaaaagaaggcccccctggtctagctggttat
ccaggacctccagggttacctggaactcaagggctgaaaggagaccccggactggaagga
tacgagggtccaagagggccacatggctttcaaggaattcctggtttaaaaggacataag
ggtcaaaaaggtcactcttttgtggtagatgctaaaggtgccaaaggtaaccaaggagtc
ctcggatattctggtcctcctggagcagcgggtcagccaggactagatggaacccttggg
cctgcaggggaccatggaccaccgggtgctggatacgcaggattacttggtcctaaaggt
taccctggtgttgctggagcaaaagggtttccagggcttagaggcccccctggtcctggt
attccaggctctcaggggcaacctggacctcaaggttatgagggacttcctggaccctca
ggaattcctggacgaccgggcccttcaggtgaaaccgcggaatgctgtcttgaagaagag
attggatctggatttggtcagaaaggagagtcaggctcaccagggattccaggtgagcca
ggaagagatggtcctcccggctctgtgggactactgggtccgaaaggcatgaaaggagat
gacagggaaactggagggattggacagctaggtcttcagggtttaaacggggatccaggg
gaccccggtcccagtggaattagcctggatggccgtccaggactttttgggttgccagga
cttcccggcaggaagggtgacccaggagatgtcctctctgccaggccaggggctgctggc
ccaccaggccgccctggggctcaggggacaagcggactccgtggaattcctggaaaccta
gggtctcacggtgcacaaggccaacctggacgacctggttggaaaggagagccaggagac
aatggtgaccatggagagactggtctcccaggtccaccctgcacgttgtgtgagctgatt
ggatctccaggaccgataggacctccaggaaaccctggacagacgggagtaccaggctac
tctggtcagaagggttttaagggagatataggtccacctggtcatggacatcggggtcca
caaggtttccctggccctccgggtttgccaggcctcgctggaccaagaggccccgctggt
ccctcaggagatcctggaactgatggctggttgggacagaaaggggaaagtgggtaccga
ggcagggcaggggccacaggtttacctggtcatccaggaccagcgggacccagaggtaaa
caaggagagagaggctttgatggtcgcctaggtgacagtggacaccaaggacagcctggt
cttaaaggtgtacgtggtccaccaggattaagaggaccgtcagggatcctgaatataaca
aaaggcccatcaggacttgcagggaggaaggggcaatcaggacaacaaggacctgcaggc
tcaaagggcccaaggggagtgccaggtgattgggggcctgatggatggcctggttttcca
ggcttgaaaggcaacactggtgctccaggccggacaggaagacctggacctgttggatac
ccagggtttaaaggtttccctggtccaaggggatattctcgaccggatggagatctgggg
gatcaagggtcaaggggactcgtgggtatcccagggtcaccaggatttccaggagccaag
ggtgagccaggaacgtctcatggaacacctggtccactgggacccaaaggatcgcccggg
gaggatggacccagtgcatccagagggagttccggagatccaggggacccaggtcaccag
ggaaggccaggtcagcctggacaacgaggcgtcgtcggtgaaccaggaagactaggagga
ccaggcttccctggacctcgtggcccatcaggtcatccaggtgttccaggttttccaggc
gattatggaggtctgggacccccgggcccaccgggcccatatgggcctccaggccttcct
ggaccaccaggtctggatggactagatgggcttagaggtccaaacggaataaaaggacaa
actggctcgtgttcacctggcactccaggaccagatggtttacctggagtcaaaggtctc
aggggtcagcaggggcctcgaggagcaattccttctgggtccaagggccagaggggctca
cctggtcccgcaggttttccgggtttcccaggtatacctggtaaccgtggtaacaaatgc
tccaagcctctaccaggacccaacggagacctaggttatgtaggacctccaggaccccca
ggtcctcctggtgatccagggcctacaggaagcagtattttccccaaaggagacccaggc
ccaaatggcctcccagggttaccaggtcgtaagggggataggggcctccctgggcctcct
gggtctcagagctatccaggctttacaggaccaaaaggtgagaaaggtcctcctggtcca
agaggttctcagagacccaaaggtcagatcgggatccctggaccttggggtcgcaaggga
ctgacgggcccagctggagacacaggtgtaaaaggtgctaccggtgattattatcacatg
aaggcggagggggctccccttggaatcttagggccacgtggtcacccaggatctttggga
tatcctggcgatagtggtgtccctgggactccaggacgtaaaggacagaagggctccata
gggtttgtgggccaccctggcaaactaggtcctgcgggtcatactggtcgagttggagac
ccgggagatgctggtcagctaggatttgccggacctcaaggtatcccaggtccacccggc
gatccaggtagccaaggccaaagggaggcgttaaggtccggcttcctgttggcaatccac
agccagtcggtccaggtgccacagtgtcctgcaggcagcagccagctctgggtgggctac
agtctggtctctttggaggggcaagagaaggctcacgctcaagacctgggccacgctggc
tcttgcctaccagttttctccaccatgcctttctcctactgcaacaaagccgcctgtcac
tactcgagtcgcaacgacaaatcctattggctctccaccaccgcccccatacccatgatg
cccctctccggcccggagattagctcccacatcagccgctgtgtggtgtgtgagacagtt
tcgcccgcagtggcttttcacagccaggatcacatagtgcccccatgcccagctggctgg
aggagtctgtggaccgggtactctttcctcctgcacacaggggcaggggatgagggtggt
ggccagtctctgacttcttctggaagctgcctgaaggatttccgaactcaccccttcata
gagtgccagggtgcgcgcggctcttgtcactactttgccaacctctacagtttttggctg
accactgtcagccagacggagcagttcgtcacccagaggcccggcaccatcaaggcagcc
gacaagcagcggcgcaaggtcagccagtgtcacgtctgcctcagagaactataa

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