Pseudoliparis swirei (Mariana hadal snailfish): 130198426
Help
Entry
130198426 CDS
T09868
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04510
Focal adhesion
pswi04512
ECM-receptor interaction
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130198426
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130198426
09142 Cell motility
04820 Cytoskeleton in muscle cells
130198426
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130198426
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130198426
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
130198426
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130198426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
130198426
NCBI-ProteinID:
XP_056277564
LinkDB
All DBs
Position
8:complement(14901155..14924065)
Genome browser
AA seq
1617 aa
AA seq
DB search
MGSSVSDVTLCPLRWILVLVVVMQQLSAGEIEGPCQGRDCSVCQCLPAKGARGAPGKPGQ
QGSGASMGPRGREGSTGEKGRRGAEGSHGPEGPKGDRGLQGSKGIKGEPLYGAIFRGLQG
DDGRDGLPGPPGRRGVIGPKGHLGFPGLLGPEGLEGPNGGRGRPGDPGGSLAGAKGDDGE
QGPPGPQGPEEVIEFPPDFLPPKGNKGDTGLPGQCGPKGISGGRGDTYSQDIKGEQGILG
FPGLRGIPGFPGRDGPLGPEGLRGEKGYPGLIGRNGPKGYPGDVGLPGPLNLHNGSDVRG
DKGDRGYPGRPGPHGDPGFMGMHGLPGPPGLTITEELGLPGPRGFLGPKGYKGEPGVYNN
FENLFPGLKGTKGLFGPKGVTGPPGPPDYFCEAGHPGDTGDIGHKGSPGNQGLKGIAGCI
GACDCRSAGGKEGPPGLAGYPGPPGLPGTQGLKGDPGLEGYEGPRGPHGFQGIPGLKGHK
GQKGHSFVVDAKGAKGNQGVLGYSGPPGAAGQPGLDGTLGPAGDHGPPGAGYAGLLGPKG
YPGVAGAKGFPGLRGPPGPGIPGSQGQPGPQGYEGLPGPSGIPGRPGPSGETAECCLEEE
IGSGFGQKGESGSPGIPGEPGRDGPPGSVGLLGPKGMKGDDRETGGIGQLGLQGLNGDPG
DPGPSGISLDGRPGLFGLPGLPGRKGDPGDVLSARPGAAGPPGRPGAQGTSGLRGIPGNL
GSHGAQGQPGRPGWKGEPGDNGDHGETGLPGPPCTLCELIGSPGPIGPPGNPGQTGVPGY
SGQKGFKGDIGPPGHGHRGPQGFPGPPGLPGLAGPRGPAGPSGDPGTDGWLGQKGESGYR
GRAGATGLPGHPGPAGPRGKQGERGFDGRLGDSGHQGQPGLKGVRGPPGLRGPSGILNIT
KGPSGLAGRKGQSGQQGPAGSKGPRGVPGDWGPDGWPGFPGLKGNTGAPGRTGRPGPVGY
PGFKGFPGPRGYSRPDGDLGDQGSRGLVGIPGSPGFPGAKGEPGTSHGTPGPLGPKGSPG
EDGPSASRGSSGDPGDPGHQGRPGQPGQRGVVGEPGRLGGPGFPGPRGPSGHPGVPGFPG
DYGGLGPPGPPGPYGPPGLPGPPGLDGLDGLRGPNGIKGQTGSCSPGTPGPDGLPGVKGL
RGQQGPRGAIPSGSKGQRGSPGPAGFPGFPGIPGNRGNKCSKPLPGPNGDLGYVGPPGPP
GPPGDPGPTGSSIFPKGDPGPNGLPGLPGRKGDRGLPGPPGSQSYPGFTGPKGEKGPPGP
RGSQRPKGQIGIPGPWGRKGLTGPAGDTGVKGATGDYYHMKAEGAPLGILGPRGHPGSLG
YPGDSGVPGTPGRKGQKGSIGFVGHPGKLGPAGHTGRVGDPGDAGQLGFAGPQGIPGPPG
DPGSQGQREALRSGFLLAIHSQSVQVPQCPAGSSQLWVGYSLVSLEGQEKAHAQDLGHAG
SCLPVFSTMPFSYCNKAACHYSSRNDKSYWLSTTAPIPMMPLSGPEISSHISRCVVCETV
SPAVAFHSQDHIVPPCPAGWRSLWTGYSFLLHTGAGDEGGGQSLTSSGSCLKDFRTHPFI
ECQGARGSCHYFANLYSFWLTTVSQTEQFVTQRPGTIKAADKQRRKVSQCHVCLREL
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atggggtcctcagtttcagatgtaaccctgtgtcctctcaggtggatccttgtcctggtc
gtcgttatgcagcagctcagtgcaggggagattgaaggcccatgtcaaggaagagactgc
tctgtatgtcagtgtcttcctgccaaaggtgcacggggagctccagggaagcctggccaa
caaggatcgggggcatcaatgggacctcggggacgtgaagggtcaactggcgagaagggc
agacggggagcagaaggatcacatggccctgaggggccaaaaggcgaccgcggattacaa
ggatctaaaggaattaaaggagaacctttgtatggtgctatcttccgagggcttcagggg
gatgacggtagagatggactgcctggtccacctggaagacgaggagtcattggacctaaa
ggccacttgggctttcctggccttcttggacctgagggcttggaaggacctaatggtggg
agaggacgaccaggcgaccctggaggatcactggcaggagctaaaggtgacgatggtgag
caaggcccacctggcccacaaggaccagaagaagtcatagaatttcctccagacttcctt
ccacccaaaggcaacaagggagacacgggtcttcctggacaatgtggaccaaagggcata
agcggtggcagaggagacacatacagccaagacataaaaggagagcaaggcatcctaggt
tttcctggattaaggggtattccagggtttcctggaagagatggacctttaggaccagag
ggtttgcgtggagagaaaggatatccaggtctcattggaagaaatggaccaaagggctac
ccaggagatgtaggactccccggacccctgaaccttcacaatggaagtgacgtcagaggt
gataaaggtgaccgagggtatcctggaagacctggaccccacggtgaccctgggttcatg
ggcatgcatggacttcccggcccaccagggttaacgataacagaagagttgggtctgcct
ggtccacgagggttccttggtccgaagggctataagggagagccaggggtgtataacaac
tttgaaaatctgtttccgggactaaaggggactaaaggactcttcggacccaaaggtgtc
acaggccctccaggtcctccagattacttctgtgaggctggtcacccgggagacactggt
gacataggacacaaaggatctcctggaaaccaagggctcaagggaattgcaggttgtata
ggggcatgtgactgtaggtctgctgggggaaaagaaggcccccctggtctagctggttat
ccaggacctccagggttacctggaactcaagggctgaaaggagaccccggactggaagga
tacgagggtccaagagggccacatggctttcaaggaattcctggtttaaaaggacataag
ggtcaaaaaggtcactcttttgtggtagatgctaaaggtgccaaaggtaaccaaggagtc
ctcggatattctggtcctcctggagcagcgggtcagccaggactagatggaacccttggg
cctgcaggggaccatggaccaccgggtgctggatacgcaggattacttggtcctaaaggt
taccctggtgttgctggagcaaaagggtttccagggcttagaggcccccctggtcctggt
attccaggctctcaggggcaacctggacctcaaggttatgagggacttcctggaccctca
ggaattcctggacgaccgggcccttcaggtgaaaccgcggaatgctgtcttgaagaagag
attggatctggatttggtcagaaaggagagtcaggctcaccagggattccaggtgagcca
ggaagagatggtcctcccggctctgtgggactactgggtccgaaaggcatgaaaggagat
gacagggaaactggagggattggacagctaggtcttcagggtttaaacggggatccaggg
gaccccggtcccagtggaattagcctggatggccgtccaggactttttgggttgccagga
cttcccggcaggaagggtgacccaggagatgtcctctctgccaggccaggggctgctggc
ccaccaggccgccctggggctcaggggacaagcggactccgtggaattcctggaaaccta
gggtctcacggtgcacaaggccaacctggacgacctggttggaaaggagagccaggagac
aatggtgaccatggagagactggtctcccaggtccaccctgcacgttgtgtgagctgatt
ggatctccaggaccgataggacctccaggaaaccctggacagacgggagtaccaggctac
tctggtcagaagggttttaagggagatataggtccacctggtcatggacatcggggtcca
caaggtttccctggccctccgggtttgccaggcctcgctggaccaagaggccccgctggt
ccctcaggagatcctggaactgatggctggttgggacagaaaggggaaagtgggtaccga
ggcagggcaggggccacaggtttacctggtcatccaggaccagcgggacccagaggtaaa
caaggagagagaggctttgatggtcgcctaggtgacagtggacaccaaggacagcctggt
cttaaaggtgtacgtggtccaccaggattaagaggaccgtcagggatcctgaatataaca
aaaggcccatcaggacttgcagggaggaaggggcaatcaggacaacaaggacctgcaggc
tcaaagggcccaaggggagtgccaggtgattgggggcctgatggatggcctggttttcca
ggcttgaaaggcaacactggtgctccaggccggacaggaagacctggacctgttggatac
ccagggtttaaaggtttccctggtccaaggggatattctcgaccggatggagatctgggg
gatcaagggtcaaggggactcgtgggtatcccagggtcaccaggatttccaggagccaag
ggtgagccaggaacgtctcatggaacacctggtccactgggacccaaaggatcgcccggg
gaggatggacccagtgcatccagagggagttccggagatccaggggacccaggtcaccag
ggaaggccaggtcagcctggacaacgaggcgtcgtcggtgaaccaggaagactaggagga
ccaggcttccctggacctcgtggcccatcaggtcatccaggtgttccaggttttccaggc
gattatggaggtctgggacccccgggcccaccgggcccatatgggcctccaggccttcct
ggaccaccaggtctggatggactagatgggcttagaggtccaaacggaataaaaggacaa
actggctcgtgttcacctggcactccaggaccagatggtttacctggagtcaaaggtctc
aggggtcagcaggggcctcgaggagcaattccttctgggtccaagggccagaggggctca
cctggtcccgcaggttttccgggtttcccaggtatacctggtaaccgtggtaacaaatgc
tccaagcctctaccaggacccaacggagacctaggttatgtaggacctccaggaccccca
ggtcctcctggtgatccagggcctacaggaagcagtattttccccaaaggagacccaggc
ccaaatggcctcccagggttaccaggtcgtaagggggataggggcctccctgggcctcct
gggtctcagagctatccaggctttacaggaccaaaaggtgagaaaggtcctcctggtcca
agaggttctcagagacccaaaggtcagatcgggatccctggaccttggggtcgcaaggga
ctgacgggcccagctggagacacaggtgtaaaaggtgctaccggtgattattatcacatg
aaggcggagggggctccccttggaatcttagggccacgtggtcacccaggatctttggga
tatcctggcgatagtggtgtccctgggactccaggacgtaaaggacagaagggctccata
gggtttgtgggccaccctggcaaactaggtcctgcgggtcatactggtcgagttggagac
ccgggagatgctggtcagctaggatttgccggacctcaaggtatcccaggtccacccggc
gatccaggtagccaaggccaaagggaggcgttaaggtccggcttcctgttggcaatccac
agccagtcggtccaggtgccacagtgtcctgcaggcagcagccagctctgggtgggctac
agtctggtctctttggaggggcaagagaaggctcacgctcaagacctgggccacgctggc
tcttgcctaccagttttctccaccatgcctttctcctactgcaacaaagccgcctgtcac
tactcgagtcgcaacgacaaatcctattggctctccaccaccgcccccatacccatgatg
cccctctccggcccggagattagctcccacatcagccgctgtgtggtgtgtgagacagtt
tcgcccgcagtggcttttcacagccaggatcacatagtgcccccatgcccagctggctgg
aggagtctgtggaccgggtactctttcctcctgcacacaggggcaggggatgagggtggt
ggccagtctctgacttcttctggaagctgcctgaaggatttccgaactcaccccttcata
gagtgccagggtgcgcgcggctcttgtcactactttgccaacctctacagtttttggctg
accactgtcagccagacggagcagttcgtcacccagaggcccggcaccatcaaggcagcc
gacaagcagcggcgcaaggtcagccagtgtcacgtctgcctcagagaactataa
DBGET
integrated database retrieval system
