Pseudoliparis swirei (Mariana hadal snailfish): 130198429
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Entry
130198429 CDS
T09868
Symbol
tnn
Name
(RefSeq) tenascin-N
KO
K06252
tenascin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04510
Focal adhesion
pswi04512
ECM-receptor interaction
pswi04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130198429 (tnn)
04518 Integrin signaling
130198429 (tnn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130198429 (tnn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130198429 (tnn)
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130198429 (tnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
Fn3_Dep-1_3rd
FN3_DSCAM-DSCAML_C
EGF_2
Pur_ac_phosph_N
EGF_Tenascin
Fn3_VIN3
NDNF
DUF7949
Motif
Other DBs
NCBI-GeneID:
130198429
NCBI-ProteinID:
XP_056277567
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All DBs
Position
8:15350009..15375537
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AA seq
1118 aa
AA seq
DB search
MTKLWRALCLLVLLCTASPLSSATSHPDPSAAEQTVTFSNVYKIDIPGSSSCKLELLPTQ
DETGQQMETTTNRENDIIFRHNIKLQMPKCDCQESESFKSLLYRVNGLEEEVTYLKTQCT
QGGCGSGGAAGVDTSCSGHGAFQPHACSCLCNPGWEGPDCSASSCPDECNDDGRCVNGKC
VCHQGYAGEDCSHPTCPDNCNDKGRCVDGKCACFPHFTGEDCSVQKCPGDCVGNGQCVDG
QCFCEEGFHGEDCSLVDSPQGLRLVQMTDVSLLVEWESVRGAEHYILTYHPKNDESTQEH
IRVSNTDSSYLISGLTPGVTYIVQVFAVIKDIQSEADKMEATTDVSAIDGIRVLGHTEVS
IQLDWKNPSADVDHFRLTHTDPSGQEAGQSIQRNQEARTKHTIVGLFPGTEYQISVQAIK
GITEGKASSVIGATDIDAPTKLITTEVTEDTATVSWDLVQAEIGGYMLSYTSAGGSSAEI
PVGRDSTSYRLVGLKPGVLHTVYIWAFKDNYVSRKISTVAETELDAPTNVSAQDETDCSF
RVSWDHAQAEIDGYVLGYSSSEGSSEEIPVRSDSTSYTLTGLRPGVLHTVYIWAIKGSKA
SRKSSTQAETELDAPAHLSARDETESSFSVSWAPAQAEIDGYILTYNSSDGASGEIPVGP
DSTSYMLTGLRPGAFYTVYIWATKGNKASRQISTHAQTELDAPANLLARDETESSFSVSW
DPVQAEIDGYVLSYSPSEGASGEIPVRSDSTSYMLAGLRPGVLYTVNIWAIQGSKASRKI
STNAETDIDPPKELKATDVTLESALLTWVPPLADIEGYVLIYRDEDGNMEAVEMQLDAGQ
RRFAVSSLETGKRYIVSIAAYRGDKRSEAVETTFRTVGLLYPFPMDCIQIMKNGNKESGV
YTVYVHNDRSKPIEAYCDMETDGGGWLVLQRRTSGKLDFMKRWRQYIAGFGNMTDEFWIG
LGKIYELTNTPTQYELRFDLGVGAERAYAAYDNFKIAPVKQKFQITIGKYSGTAGDAMTY
HQGRPWTTVDNDNDIALGNCALVHRGAWWYKNCHLANINGKWGDNRHSLGVNWEPWKGHL
VSLDFTEMKIRPVGASSSRKRRSLTAREKSTTTNLRKK
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaactgtggcgggccctgtgccttctggtcctactctgcaccgcgtcaccgctc
agctccgccaccagccacccagacccatcagccgcagagcagacggtcaccttcagcaac
gtctataaaatcgacatcccggggagctcgagttgtaaactcgagctcctgccaacgcag
gacgaaacaggtcagcagatggagacgacgacgaatagagagaacgacatcatcttcaga
cacaacatcaagctgcagatgccaaagtgtgactgtcaggagtctgaaagcttcaagtcc
ctgttgtacagagtgaacgggctggaggaagaagtcacctacctgaagacccagtgtact
caggggggttgtggaagcggtggagctgcaggcgtggacacaagctgcagtggccatggt
gccttccagccgcacgcctgcagctgcctctgtaacccagggtgggaaggccccgattgc
tccgcctcgtcctgccctgacgagtgcaacgacgacggccgctgtgtgaatgggaagtgt
gtgtgccaccagggctacgcgggagaggactgcagccatcccacgtgtccagacaactgc
aacgacaagggacggtgtgtggatgggaaatgcgcgtgtttcccgcacttcaccggcgag
gattgcagcgtccagaagtgtcccggcgactgcgtcggtaacggacagtgtgtggatggc
cagtgcttctgtgaagagggctttcatggcgaagactgttcattggtcgacagtcctcag
ggtctgcgcttggtccagatgactgacgtttccctcctggttgagtgggagtcagttcgt
ggggcagagcattatattctgacataccatcccaaaaatgatgagagtacccaggagcat
attcgtgtttccaacacagacagctcctacctcatctcaggtctgactcctggagtcact
tacattgtccaggtgtttgctgtcatcaaagatatccaaagtgaagcagacaagatggaa
gctaccacagatgtctctgctattgatggcatcagagtccttggccacacagaagtctct
atccagctggactggaagaacccgtcagccgacgtggatcacttcaggctcacacacact
gacccttcaggacaggaggcagggcagagcatacagaggaaccaagaggcgcgcaccaaa
cacactatagttggtctttttccaggaacagagtaccagatctcggtgcaggccatcaaa
ggaatcactgagggaaaagcgtcctccgtcattggtgccacagacatcgatgctcctacc
aagctgatcaccactgaagtaacagaggacactgcgacagtttcatgggatctcgtccag
gcagaaataggtggctacatgttgagctacacctctgccggaggctccagcgccgagatc
cccgtcggacgtgacagcacctcgtaccggctggttggcttgaagcctggagttctccac
actgtttacatctgggccttcaaggacaactacgtcagcaggaagatttcaacagtcgct
gaaacagagctggacgctcctactaacgtctcggcacaagatgaaacagattgtagcttc
agggtgtcttgggatcacgcccaggcagaaatcgatggctacgtcctcggctacagctct
tcagagggctcaagtgaggaaatccccgtccggtctgacagcacctcgtacacgctgact
ggcctgaggcctggcgtcctccacactgtctacatttgggccatcaaggggagcaaagcc
agcaggaagagctccacacaagccgagacagaactggatgctcccgctcacctctcagcc
cgagatgaaacggagtccagcttcagcgtgtcatgggctccagcccaggctgaaatagat
ggctacatcctcacctacaactcctctgatggcgctagtggggagatcccagtcgggcct
gacagcacctcttacatgctgactggtttgaggcctggggccttctacactgtctacatc
tgggctactaaaggaaacaaagccagcaggcaaatctcaacacacgctcagacagaactg
gatgctcctgctaacctcttagcccgagatgaaacagagtccagcttcagcgtgtcttgg
gatccagtccaggcggaaattgatggctacgtcttaagctacagcccctctgagggcgct
agtggggagatcccagtccggtctgacagcacctcgtacatgctggctggcctgaggccc
ggtgtcctctacactgtcaacatctgggccatccaggggagcaaagccagcaggaagatt
tcaacaaatgctgagacagacattgatcccccgaaggagctgaaggcgacagatgtgact
ctggagtctgcgttattgacctgggttcctcctcttgctgacattgagggttacgttctc
atctacagagatgaggacggcaacatggaggcggttgaaatgcagcttgatgctggccag
agacgttttgctgtatccagcttggagacggggaagagatacatcgtcagcatcgctgcc
tacaggggagacaagaggagcgaggcggtggagaccaccttcagaacagttggcctcctg
taccccttccccatggactgcattcagatcatgaagaatggcaataaggagagtggagtc
tacaccgtctatgttcacaacgaccgctccaaaccgattgaggcttactgcgacatggag
accgatggaggcggctggctggtgctccaacgacgcacctctggcaaactggacttcatg
aagcgctggagacagtacatcgcagggtttggcaacatgacggatgagttctggattggt
ctgggtaagatttatgagctcaccaacacaccgacccagtacgagctgaggtttgacctg
ggagtgggtgctgagagagcctatgctgcgtacgacaactttaagatcgcaccggtcaag
cagaaattccaaatcactatcggcaaatacagtggcacagcaggtgacgctatgacctac
caccaaggccgaccctggacgactgtggataatgataacgacatcgccctggggaactgt
gccctggtccaccgcggcgcctggtggtacaaaaactgtcatcttgccaacatcaatgga
aagtggggagacaacaggcacagcttgggagtgaactgggagccgtggaagggccacctg
gtgtccctcgacttcaccgagatgaagatccgacctgtgggagcctcgtccagcaggaag
aggcgatcgttgacggccagagagaagagcacaaccacaaacctccgaaagaaatag
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