Pseudoliparis swirei (Mariana hadal snailfish): 130198449
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Entry
130198449 CDS
T09868
Symbol
copb2
Name
(RefSeq) coatomer subunit beta'
KO
K17302
coatomer subunit beta'
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130198449 (copb2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pswi04147
]
130198449 (copb2)
Membrane trafficking [BR:
pswi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
130198449 (copb2)
Exosome [BR:
pswi04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
130198449 (copb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_WDR75_1st
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
NBCH_WD40
Beta-prop_HPS5
Beta-prop_SPT8
PEP5_VPS11_N
Beta-prop_IFT140_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_LRRK2
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
CDPS
HEAT_GCN1
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
130198449
NCBI-ProteinID:
XP_056277589
LinkDB
All DBs
Position
8:12466798..12474520
Genome browser
AA seq
934 aa
AA seq
DB search
MPLRLDIKRRLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RAAKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWEKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRQVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVCGLRGSNNVALGYDEGSIIIKVG
REEPAMSMDTNGKIIWAKHSEIQQANLNAMGDAEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFAWAHDSSEYAIRESNSLVKIFKNFKE
KKSFKPDFGAEGIYGGFLLGVRSMNGLAFYDWENTDMIRRIEIQPKHIFWSDSGELVCIA
TEESFFILRYMSEKVAASQENNEGVTEDGIEDAFEVQGEIQEIVKTGLWVGDCFIYTSSV
NRLNYYVGGEIVTIAHLDRTMYLLGYIPKDDRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFGMADKVLPTIPKEQRTRVAHFLEKQGFKQQALAVSTDPEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFVLAQECLHHAQDYGGLLLLATASGNVTMVGKLAEGAE
KDGKNNVAFMTYFLQGNLDQCLELLIRTNRLPEAAFLARTYLPSQVSRVVKLWRENLATV
NTKAAESLADPTEYENLFPGLKEAFAAEHYLRESCLGTSRPAKEYPLVTLNEDRNILEEA
QGYEPKGTFIPAVSKTRDSEESAAPVAAVSQPEPAPKAVHEEEEEEEEDEEEEIPELSQS
QKETLDELEVDLDNMELDDIDTTDVNLDEDFLDD
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgaggctggacatcaagcggaggctgacggctcggtcagaccgagtgaagagt
gtggaccttcacccaactgagccatggatgcttgccagtctatacaacggcagtgtctgt
gtgtggaaccacgaaacacagactctcgtcaagacctttgaagtatgtgacctccctgtc
agagccgctaaatttgtggcaaggaagaactgggttattaccggagcggatgacatgcag
atccgagtgttcaactacaacaccttggagcgtgtccacatgtttgaggcccactctgac
tacatccgttgcatcgctgtccatccgacccagccctatatccttaccagcagtgatgac
atgttgatcaagctttgggactgggagaagaagtggtcatgcagccaggtgtttgagggc
cacactcactatgtcatgcagattgtcattaaccccaaggacaacaaccagtttgccagt
gcctccctggacaggacgattaaggtttggcaactaggctcttcgtctcctaattttact
ttggaggggcatgagaaaggggtcaattgtattgactactatagcggaggagacaagccc
taccttatttcaggggctgatgaccgccaagtaaagatctgggactaccagaacaagacc
tgtgttcagactctggaaggccacgcccagaatgtctcttgtgtcagcttccaccccgag
ctgcccatcatcattactggttcagaggacggtacggtgcgtatctggcactcaagcact
taccgcctggagagtaccctgaactacggcatggagagagtgtggtgtgtgtgcggcctc
aggggctccaacaatgtggccctgggctacgatgaaggcagcatcattatcaaggtgggt
cgcgaggagccagcaatgtctatggatacgaacggaaaaatcatctgggctaaacacagc
gagatacagcaagccaacctgaatgccatgggcgacgctgagatcaaggatggagagaga
ctgccgctggctgttaaagacatgggaagctgtgagatttacccccaaaccattcagcat
aacccgaatggaaggtttgttgtggtgtgcggagatggagagtatatcatctatacggcc
atggctttgaggaacaagagcttcggctcagcacaggagtttgcctgggcacatgactca
tctgaatatgccatcagggaaagcaacagtcttgtgaaaatcttcaaaaatttcaaagaa
aagaaatcttttaagccggactttggagctgaagggatctatggaggtttcttgcttggg
gtaagatccatgaatggcctggcattttatgactgggagaacactgacatgatccgccgc
attgagatccagcccaaacacatcttctggtcagattctggtgaactggtctgcattgct
acagaagagtcctttttcattctgcgttatatgtcagaaaaagtagctgcttctcaagag
aacaatgaaggagtgactgaggatggtattgaagatgccttcgaggtccaaggagaaatc
caggagattgtgaagactggactttgggtaggagactgcttcatctacaccagctctgtg
aacagactcaactactatgtaggaggagagatcgtcactattgctcaccttgacagaacc
atgtacctgctgggttacataccaaaagacgaccgtctgtaccttggagacaaggagctc
aacattgttagctactccctgctggtctccgtcctggagtaccagactgctgttatgagg
agggactttggaatggctgacaaggtgcttcccacaattcctaaagagcagcggaccaga
gtcgcccatttcttggagaaacagggcttcaagcagcaggcgctggctgtgtccacagac
ccagaacacaggtttgagctggcgttgcagctgggagagttgaagatcgcctaccagctg
gcggtggaggcagagtcagagcagaagtggaagcagttggcggagctggcgatcagtaag
tgccaattcgtcctggcccaggagtgcctgcaccacgctcaggattacggcggcctgctc
ctgctcgcaacagcctccggtaacgtgacaatggtgggcaagttggctgagggggcagag
aaggacggcaagaacaatgtggccttcatgacctacttcctgcaggggaatctggatcag
tgtttggagcttctgatcagaacaaaccgactgcctgaagcggccttcctggctcgcacc
tacctgcccagtcaggtgtcccgtgtggtcaaattatggagggagaacctggccacggtc
aacacgaaggcggccgagtctctagcagaccccaccgagtatgagaatcttttccccggg
ctgaaagaagcctttgctgctgagcattacctccgagagtcctgcttgggcacctctagg
cctgctaaagaataccctctcgtcacgctcaacgaagacaggaatattcttgaggaggct
cagggatacgagcccaaaggaaccttcattcctgctgtctccaagacacgggatagtgag
gagtcggcggctccagttgctgcagtttcacagcctgaacctgctcctaaagcagtgcac
gaggaagaggaagaagaggaagaagacgaggaggaggaaatccctgagttatcacagtca
caaaaagagactctggatgagctggaagtggacctggacaacatggagctggatgacatt
gacaccacagacgttaacctcgatgaagactttctagatgactga
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