Pseudoliparis swirei (Mariana hadal snailfish): 130198549
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Entry
130198549 CDS
T09868
Name
(RefSeq) cadherin-2-like
KO
K06736
cadherin 2, type 1, N-cadherin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
130198549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130198549
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130198549
04090 CD molecules [BR:
pswi04090
]
130198549
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
130198549
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Major cadherins
130198549
CD molecules [BR:
pswi04090
]
Proteins
130198549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
DUF6923
Stevor
Motif
Other DBs
NCBI-GeneID:
130198549
NCBI-ProteinID:
XP_056277719
LinkDB
All DBs
Position
8:complement(16904715..16987134)
Genome browser
AA seq
1168 aa
AA seq
DB search
MYSLHEGSALFLLLVLAGLQIAAEGRGAPPCRPGFSDDVYKVVVPDITEEGRPLFNVTFV
DCGRRGPVRFECSNPTDFRIEADGAVYAARTVQHAAAATSPLLIKASDAATLQQWVTRVI
LTASADSGQQVQQVAAPPVVSEDLKEIVFPSRNVDSQLKRTKRDWVIPPINVPENSRGPF
PLELVRIRSDHDKNRSLRYSVTGPGADQPPTGIFIIEPISGELSVSKPLDREHISNFHLR
AHAVDLNGSQVENPIDIVINVIDMNDNRPEFTHQIWNGTVPEGSKPGTFVMTVTSVDKDD
PKTANGMLRYEILSQNPESPTSNMFTINNKTGGIITVAAGLDREKVPQYTLIIQATDMEG
NPMYGLSNTATAVIRVTDVNPPEFTAETVQQVAAPPVVSEDLKEIVFPSRNVDSQLKRTK
RDWVIPPINVPENSRGPFPLELVRIRSDHDKNRSLRYSVTGPGADQPPTGIFIIEPISGE
LSVSKPLDREHISNFHLRAHAVDLNGNQVENPIDIVINVIDMNDNRPEFTHQIWNGTVPE
GSKPGTFVMTVTSVDKDDPRTANGMLRYKILSQNPESPTSNMFTINNKTGGIITVAAGLD
REKVPQYTLIIQATDMEGNPMYGLSNTATAVIRVTDVNDNPPEFTAETFFGEVPENRVNV
IVANLTVTDKDQPNTPAWNAVYKITGGDPTGRFSVPTDPTTNEGLVTVVKPIDYEISRTY
VLTVEARNDVPLARGIHSPRQSTASVSIRVLDVNESPYFEPNPKLIKLDEGIVAESTLTT
FTAQDPDRYMHQSIRYSKLSDPANWLRIDPNTGRITTIAVLDRESPFVKNSLYNATFLAT
DSGKPQASGTGTLQIHLLDINDNAPKVFPQETEVCQKPEPNAINITALDGDLNPNAGPFA
FELAHRPSDVRRNWTIHRVSGDYAQVSLRIGFLESGIYEIPIIITDSGNLPMSNTSYLRI
KVCQCDVNGDCTDQQHIMAAGLGTGAIIAILLCIIILLILVLMFVVWMKRRDKERQAKQL
LIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPDTIEPDAIKPVGIRRLDERPLHPEP
QYPIRSAAPHPGDIGDFINEGLKAADNDPTAPPYDSLLVFDYEGSGSTAGSLSSLNSSSS
GGDQDYDYLNDWGPRFRKLADMYGGSDD
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgtactcactacacgagggcagcgctctgtttctgctgctggtcttggcaggactgcag
attgcagcagagggcaggggcgccccgccatgcagaccaggcttctctgacgatgtatac
aaggttgtggtgccagatatcacggaggagggacgtccccttttcaacgtgacgtttgtc
gactgtggccggcggggcccggtgcgcttcgaatgcagcaacccgaccgacttccggata
gaggccgacggagcggtttacgctgccaggaccgttcagcacgccgccgccgccacctcg
ccgctgctgatcaaggccagtgacgccgccacgctgcagcaatgggtgacccgagtcatc
ctgacggcctccgcggactccggccagcaggtccagcaagttgccgccccgccagtcgtg
tccgaggatttgaaggaaatagtgtttccatcacgaaacgtggacagccaactcaaacgc
acaaagagagactgggtcatccccccaatcaatgtcccggagaactcacgaggcccattc
ccactagagcttgtccggatccggtcggaccatgacaaaaaccggtccctcagatacagt
gtgacgggtcctggggctgaccagccccccaccggcatcttcatcattgaaccgatctcc
ggagagctgtctgtcagcaagcccctggaccgagagcacatctccaacttccatctgaga
gctcatgcagtggacctcaacggcagccaggtagaaaaccctattgacattgtcatcaat
gtgatcgacatgaacgacaacagacccgagttcacccatcagatctggaacggcactgtt
ccagagggctccaagccaggaacttttgtaatgacggtgacatctgttgacaaagacgac
ccgaaaaccgccaacgggatgctgcgctacgagatcctgtctcagaatccagagagcccg
acctccaacatgttcaccatcaacaataagacgggaggcatcatcacggtggccgccggc
ctggacagagagaaagtgccccagtacacgctgatcatccaggccaccgacatggagggc
aaccccatgtacggcctctccaacacggccacggcggtcatcagagtcaccgacgtcaac
ccgccggagttcacggctgagacggtccagcaagttgccgccccgccagtcgtgtccgag
gatttgaaggaaatagtgtttccatcacgaaacgtggacagccaactcaaacgcacaaag
agagactgggtcatccccccaatcaatgtcccggagaactcacgaggcccattcccacta
gagcttgtccggatccggtcggaccatgacaaaaaccggtccctcagatacagtgtgacg
ggtcctggagctgaccagccccccaccggcatcttcatcattgaaccgatctccggagag
ctgtctgtcagcaagcccctggaccgagagcacatctccaacttccatctgagagctcat
gcagtggacctcaacggcaaccaggtagaaaaccctattgacattgtgatcaatgtgatc
gacatgaacgacaacagacccgagttcacccatcagatctggaacggcactgttccagag
ggctccaagccaggaacttttgtaatgacggtgacatctgttgacaaagacgacccgaga
accgccaacgggatgctgcgctacaagatcctgtctcagaatccagagagcccgacctcc
aacatgttcaccatcaacaataagacgggaggcatcatcacggtggccgccggcctcgac
agagagaaagtgccccagtacacgctgatcatccaggccaccgacatggagggtaacccc
atgtacggcctctccaacacggccacggcggtcatcagagtcaccgacgtcaacgacaac
ccgccggagttcacggctgagacgtttttcggcgaggtgcctgaaaaccgcgtcaacgtc
atcgtggccaacctgacggtgaccgacaaggaccagcccaacacgccggcctggaacgcc
gtctacaaaatcaccggcggcgaccccaccggcaggttctcggtgcccactgatccgacc
actaacgagggcctggtgaccgtcgtcaagcccatcgactatgaaatcagtcggacgtat
gtgctgacggtggaagcgaggaacgacgtccccctggccagaggcatccactccccccgc
cagtccaccgcctccgtctccatccgagtgttggacgtgaacgagagtccctacttcgag
cccaaccccaaactcatcaagctggacgagggaatcgtggccgagtcgacgctgaccacc
ttcacggctcaggaccccgatcgctatatgcatcaaagcatcagatactccaaactctca
gatccagccaactggctgaggattgacccgaacaccgggcgcatcacaacaattgctgtg
ttggaccgagagtctccctttgtgaagaacagcctgtacaacgccacattcctggctact
gatagcggtaagcctcaagcgagcggcacaggtactctgcagatccaccttctggatatc
aacgacaacgctcccaaggtgttccctcaggagacggaggtgtgccagaagcccgagccg
aacgccatcaacatcacggcgctggacggggacctgaaccccaacgcggggccctttgcc
ttcgagttggcccaccggccctctgacgtccggaggaactggaccatccacagagtcagc
ggtgactacgcccaggtgagcctgaggatcggcttcctcgaaagcggcatctacgagatc
cccatcatcatcacggactcgggcaacctgcccatgtccaacacctcctacctgcgcatc
aaagtgtgccagtgcgacgtgaatggggactgcaccgaccagcagcacatcatggcggcc
ggcctgggcaccggggccatcatcgccatcctcctctgcatcatcatcctcctcatcctc
gtgctgatgttcgtggtgtggatgaagcggcgcgacaaggagcgccaggccaagcagctc
ctcatcgaccccgaggacgacgtgcgagacaacatcctcaagtacgacgaggaaggcggc
ggagaggaggaccaggattacgacctgagtcagctccagcagccggacacgatagagccc
gacgccatcaagccggtgggaatccgccgtctagacgagaggcccctccaccccgagcca
cagtaccccatccgatcagcagcaccccaccctggagacatcggagacttcatcaatgag
ggactcaaggcggccgacaacgaccccaccgccccgccctacgactccctgctggtgttc
gactacgagggcagcggctccacggccggctccctcagctccctcaactcctccagcagc
gggggcgaccaggactacgactacctcaacgactggggcccgcgcttcaggaaactggcg
gacatgtacggcggaagtgacgactag
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