Pseudoliparis swirei (Mariana hadal snailfish): 130198550
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Entry
130198550 CDS
T09868
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03013
Nucleocytoplasmic transport
pswi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130198550
03015 mRNA surveillance pathway
130198550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130198550
Enzymes [BR:
pswi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130198550
5.6.2.5 RNA 5'-3' helicase
130198550
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130198550
mRNA cycle factors
Common to processing body (P body) and stress granule
130198550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
130198550
NCBI-ProteinID:
XP_056277721
LinkDB
All DBs
Position
8:12130402..12148996
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AA seq
1109 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEDAELLGADTQGSEYDFTDFTLPSQTRTQGQNQSQLNSQVNG
PDRLQNGDASLLKASQLLAELNFEEDEEDTKDLPLHACSYCGIHDPACVVYCNTSKKWFC
NGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVV
VLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLLKIPSEQEQLRARQITAQQINKL
EELWKENPTATLEDLEKPGVDEEPNHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQT
QDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVNKVPD
NYGDEIAIELRSSAGTPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKL
LGHEVEDVVIKCQLPKRFTAHGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATI
VYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQT
HNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAGDPRL
AKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLF
ERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRLKKGFDFQWPQPDKP
MFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPNQIGIITPYEGQRSYLVQ
YMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTR
ARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPCKLVNTINP
GGRFMSTAMYDAREALIPGSVYDRSSNGHSSNMYFQTHDQIGMIGTGPGPLTSLNIPIPF
NLVMPPIPPPGYMGQVNGPSAGRGGGMKGKAGSGGGGGTRGGRQRNRGNMGNHSGGNGGA
DRRGGHVSGSQASQDLGSQPFSQGPLTQGYINMSQPSQLSQPGLSQPELSQDSYLGDEFK
SQIDVALSQDSTYQGERAYQNGVTGLSQY
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcgcagaccctcacgtttctcgacaccgaggac
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgacttcaccctg
ccgagccagacccggacccaaggccagaaccagagtcagctaaacagccaggtgaacggc
cctgacagactccagaatggggacgcctctctcctgaaagccagtcagctgctcgcggag
ttgaactttgaggaggatgaggaggacaccaaggacctgcctctacatgcctgcagctac
tgtggcattcatgatccagcctgcgtggtctactgcaacaccagcaagaaatggttttgt
aatggccgtggcaacacatccggcagccacattgtaaaccacctggtgagagcaaagtcc
aaggaggtgaccttgcacaaagatggccctctgggggaaacagtgctggagtgctacaac
tgtggctgtcgcaatgtcttccttctgggcttcatccctgccaaagccgactcggtagtg
gtgctactgtgcaggcagccatgtgccagccagagcagcctgaaggacatcaactgggac
agctcacagtggcagcctctcatccaggaccgctgcttcctgtcctggctgctgaaaatc
ccttcagagcaggagcagctcagggctcgtcagatcaccgcccagcagatcaacaagctg
gaagaactctggaaggaaaatcctactgcgactttggaggacctggagaagcctggtgtg
gatgaggagcccaaccatgtgctgctccgctacgaggacgcctaccagtaccagaacatc
tttggtcctctggtgaagttggaggctgactacgataaaaaactcaaagagtctcagact
caagacaacatcactgtcagatgggacttgggcctgaataaaaaaaggattgcttatttc
actcttcctaagacggactcggacatgcgactgatgcagggagatgaaatttgcctgagg
tacaaaggagaccttgcccctccatggaaaggcattggacatgtcaacaaagtccctgat
aactatggagatgagattgccatagagctaaggagcagtgccgggactccagtggagatc
ccacacaactttcaggttgactttgtgtggaagtccacttcctttgacaggatgcagagc
gccctgaagacgtttgcggtggatgaaacttcagtgtctggctacatctaccacaagctg
ctgggacatgaggtcgaggacgtggttataaagtgtcagctgcccaaacgcttcaccgct
cacggcctgcccgaccttaaccactcacaggtgtacgctgtgaagacagtgctgcagcgt
cctctcagtctgatccaggggcctcctggcacagggaagacggtaacctcggcgaccatc
gtctaccacctggccagacagggcaacgggccagtgctggtgtgtgctcccagtaatatt
gcagtcgaccagctgacagagaagatccatcagacaggcctcaaggttgtgaggctgtgt
gccaagagcagggaggctatcgactcgccggtgtccttcctggcgttgcacaaccagacc
cataacatggacagtatgccagaacttcagaagctccaacagctgaaggacgagactgga
gaactgtcctcctcagacgagaagcgctacagagctctgagacgcactgctgagagggag
ctgctgatgaatgccgatgtgatctgctgtacctgtgtcggggctggggatcctcgtctg
gccaagatgcagttccgatccatcctgattgatgagagcacccaggccactgaacccgag
tgcatggtgcccgtcgtcctgggggctaaacagttgattctggtgggtgatcactgccag
ctgggccctgtggtgatgtgtaagaaggcagccaaagcagggctgtcccagtcactgttt
gagcgtctagtagttttggggatccggccaatccgtctgcaggtccagtaccgcatgcac
ccggccctcagcgccttcccctccaacattttctatgagggctctctgcagaatggagtc
accgccgcggaccgtctgaagaaaggatttgacttccagtggccgcagccggacaagccc
atgttcttttatgtcacccaaggccaagaggaaatagccagctctggaacatcctatctc
aacaggactgaggcagccaatgtggagaaaataaccacaaggttgctgaaagctggagcc
aaacccaatcagattggcattattacgccctacgagggccagaggtcctacctggtccag
tacatgcagttcagtggctccctccacaccaaactctaccaggaggtggaaatagccagc
gtggatgcctttcaaggccgagagaaggacttcatcatcctgtcctgtgtgagggccaat
gagcaccagggcatcggcttcctcaatgatcccagacgtctcaacgtggcactcaccagg
gccaggtatggtgtgattattgtgggaaaccccaaggccctgtccaagcagcctctgtgg
aaccacctgttgaactactacaaggagcagaaggtcctggttgaagggccccttaacaat
ctgagggagagcctcatgcaattcagcaagccctgcaagcttgtcaacaccattaaccct
gggggtcgatttatgagcacagccatgtatgatgcgagggaagccctcattcctggatct
gtttatgaccgcagcagtaacggacattcgtccaatatgtatttccagacccacgaccag
attggtatgatcggcacaggtcccggtcctctgacttccctgaacatccccatccccttc
aaccttgtgatgccccccatacctccacctgggtacatggggcaggtcaacggaccctct
gcaggtcgtggtggaggaatgaaaggcaaggcaggcagtggaggaggaggcgggactcga
ggtgggcgtcaaagaaaccgaggcaacatgggaaaccacagtggaggaaatggaggagca
gaccggcgtggaggccacgtgagtggcagccaggccagccaggatttgggctcccagccc
ttctcccaggggcctctgacgcagggctacatcaacatgagccagccttctcagctgagc
cagcctggactctcccagcctgaactctcacaggacagttacctaggagacgagttcaag
tcccagattgatgtggctttgtcccaggactccacctaccagggggagcgggcctaccaa
aacggtgtgaccgggctgtcccagtactaa
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integrated database retrieval system
