Pseudoliparis swirei (Mariana hadal snailfish): 130198573
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Entry
130198573 CDS
T09868
Symbol
ptch2
Name
(RefSeq) protein patched homolog 1
KO
K11101
patched 2
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
130198573 (ptch2)
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Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
Motif
Other DBs
NCBI-GeneID:
130198573
NCBI-ProteinID:
XP_056277755
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All DBs
Position
8:complement(15172585..15201398)
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AA seq
1485 aa
AA seq
DB search
MASDRGVPGSGVYGDLPPSYTRSQPPANPDVLRRPSYCHAAFALKQISKGQAVGQKAPLW
IRARFQALLFSLGCHIQRHCGKVLFIGLLVFGALSVGLRVAAIETDIEQLWVEAGSRVST
ELRYTKEKQGEESVFTSQMLIQTPKEEGTNILTQEALLVHMEAALSASKVQVSLFGKSWD
LNKICYKSGVPIIENVMIERMIDKLFPCMIITPLDCFWEGAKLQGGSAYLPGMPDIQWMN
LDPVKLMEELSQFTSLEGFREMLDKAQVGHAYMNRPCLDPSDPDCPLSAPNKEQGESPDI
AGRLQGGCHGFSRKFMHWQEELILGGRVKSSQDTLLSAEALQTMFLLMSPKQLYEHFKDD
YEIHDINWNEDKATAILESWQRKFVKLVHQSIPSNSSQAIHAFSTTTLNDIMKSFSDVSV
IRVAGGYLLMLAYACVTMLRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLLGLSFNAAT
TQVLPFLALGIGVDDMFLLAHSFTEAGSNIPFKERTGDCLRRTGTSVALTSINNMIAFFM
AALVPIPALRAFSLQAAIVVVFNFGMVLLIFPAILSLDLHRREDKRLDILCCLYSPCSDR
VIHLSPHKLSDAGEQPHAPSTPTTHTHQYAAGSTITTSTQITTTVQAFTQCDAAGQHIVT
ILPPTSQISTSPPSIILCPTSQPQAVTPPPPTTSLPDPYGSELFTPTSSSTRDLLAQVED
SKSGKECVPLPFLHWNLSTFAREKYAPLLLKPKSKAIVVVLFLGLLGLSLYGTTMVHDGL
YLTDIVPRDTKEYDFIDAQFKYFSFYNMYLVTMDGFDYARSQRLLIQLHNAFNSVKYVVR
DSDNKLPRMWLHYFQDWLRGLQATFDADWQAGRITSGSYRNGTEDGALAYKLLIQTGSKK
EPFNYSQLTSRRLVDAEGLIPAEVFYIYLTVWVSNDPLGFAASQANFYPHPREWIHDKYD
TTGENLRIPAAEPLEFAQFPFYLNGLRQASDFVEAIESVRAICDEFGRKGVLNYPNGYPF
LFWEQYIGLRHWFLLAISMVLACTFLVCAILLLNPWTAGIIVFILAMMTVELFGMMGLIG
IKLSAIPVVILIASVGIGVEFTIHIALGFLTAIGNRNKRSAVALEHMFAPVVDGAISTLL
SILMLAGSEFDFIMRYFFAVLAILTVLGMLNGLVLLPVILSMMGPPAEVTPVDNAGRLPT
ASPEPQLPPPMTHHGYYTGHHNPRSPRQQAFSESSDSEYYSEMTTTPGVGEEDYKYCDMA
SHTSGPPSTSHILLEASKNPSFPKLTVVKPFKDNSAGTGGRVEPSNESSHAAQSPLGSQV
TCWDGNKREPQPGLQRLQAQHLPNERPHFLGRTYQSGPRLQSGRAPQPNRTKGPSYSNSG
SALPTLHCSAGGPVTMVTATASVTVAVHPTLPGTAYQRYMHEGFDTDSESGCFEAAQRTC
GDKTNFSSCKRDSLELQDLEAAQSQAEHPLGKTQGVLRIQAANDC
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggatcgcggggtccccgggtccggcgtctatggagatttacccccgagttat
acgcgctcccagccgcctgcgaacccagacgtcctccggagacccagctactgccacgct
gcgttcgcacttaaacagatctcaaagggtcaggctgtaggtcagaaagctcctctgtgg
atccgggcgaggttccaggccctcctgttctctctgggctgccacatccagcggcactgt
gggaaggtcctctttattggactcttagtgttcggggctctgtcggtgggcctccgagtc
gcggccatcgaaacggacatcgagcagctatgggtggaagctggtagtcgggtgagcacg
gagctccgctacaccaaggagaagcagggagaggagtccgtatttacctcacagatgctt
atccagacccccaaagaagagggcaccaatattcttacccaggaggctttgctggttcac
atggaagccgccctgtccgccagcaaggtccaggtgtcactgtttggaaaatcgtgggat
ctgaacaaaatatgctataaatcaggagttcccattatagaaaacgtcatgattgaaagg
atgattgacaagctattcccctgtatgataatcaccccattggactgtttttgggaaggg
gccaaactacagggaggatccgcctatttaccgggtatgccggacatccagtggatgaat
ctagatccagtcaagttgatggaggagctgagtcagttcacttcactggaaggattcagg
gagatgttggacaaagctcaggtcggacatgcctacatgaacaggccatgtctggacccc
tcagaccctgactgccctctcagtgcccccaacaaggagcaaggagagagtcctgacatt
gctgggcgtctccagggtggttgccacggtttcagccggaagttcatgcactggcaggag
gagctgatcctgggagggcgggtcaagagcagccaggatactctgctgagtgcggaggct
ctccaaaccatgttcctgttgatgagtcctaagcagctgtacgagcactttaaagacgac
tacgagatccacgacataaactggaatgaagacaaggctaccgccatcctcgagtcctgg
cagaggaaatttgtgaagctggtccaccagagcatcccatctaactccagccaggccatc
cacgctttctccaccaccaccctcaacgacatcatgaaatccttctctgatgtcagtgtc
atcagggtggccggcgggtacctgctcatgctggcctatgcctgtgtgaccatgctacgg
tgggactgtgccaagtcccagggggccgtggggctggccggcgtgctcttagtcgccctg
tcagtggctgcaggactgggtctctgctccctgctcggcctctccttcaatgctgccacc
acacaggtgcttcccttcctggcattagggattggtgtggatgacatgtttctattggct
cattccttcacagaggctggaagtaacatcccctttaaggagcgaacaggagactgtttg
cggcgcaccggcaccagcgtggcgctgacttccatcaacaacatgattgcgttctttatg
gctgccctcgtccccattcctgccctgcgagctttctctttgcaggctgccatcgtggtc
gtgtttaacttcggcatggtgctgctcatcttccctgccatcctcagtctggacctccac
cggcgcgaggacaagcgcttggatatcctctgctgcctgtacagcccctgctccgaccgc
gtcatccacctctctccgcacaagctttcggacgccggagagcagccgcacgcgccttcg
acgccgacgacgcacacgcaccaatacgcggcgggatcgacgatcaccaccagcacccaa
atcaccaccacggtgcaggccttcacgcagtgcgacgcggccggccagcacatcgtcaca
atcctaccacctacctcgcagatctccaccagcccgccgtccatcatcctctgccccacg
tcacagcctcaagccgtcacacctccccccccaaccacctccctgcccgacccttacggc
tccgagctcttcaccccgacctccagctccacacgggacctcctggctcaggtggaggat
tctaaatcgggaaaggagtgcgtcccactccctttcctccactggaacctgtcgaccttc
gccagggagaaatacgccccgctgctcctcaagcccaagagcaaagccatcgtggtggtt
ctctttctgggcctgctgggcctcagcctgtatgggaccaccatggtgcacgacggcctc
tatctcaccgacatagtgccacgcgacaccaaggagtacgatttcatcgacgcccagttc
aagtatttctccttctacaacatgtacctggtcaccatggatggatttgattacgcccgg
tcacagaggctgttgatccagctgcacaacgccttcaactctgtgaaatatgtggtcaga
gacagcgacaacaaactgccccgtatgtggctgcactacttccaggactggctaagaggt
cttcaggctacttttgatgctgactggcaggccggcaggattacctctggcagctatcgt
aacggcacagaggacggagcgctggcgtacaagctcctcatccagaccggctccaagaaa
gagccttttaattacagccagctgacatctcgacgcctggtggatgccgagggtttgatc
cctgcggaggtgttttacatttacctgaccgtctgggtcagtaatgatcctctgggcttt
gcggcctcccaggccaacttctacccccatcccagagagtggattcatgacaagtacgac
acgacgggggagaatctgcgcatcccagctgcagagcctttggagtttgcccagttcccc
ttctacctgaacggccttcgccaggccagcgactttgtggaagccatcgagagtgtgcgg
gccatttgcgacgagtttggccgcaaaggcgtgttgaactacccgaacggataccccttc
ctgttctgggagcagtacattggactcagacactggttcctgctggcgatcagcatggtg
ctggcctgcaccttcctggtctgtgcgatcctcctgctcaacccctggactgccggcatc
attgtgttcattttggccatgatgacggtggagctgtttggcatgatgggtctgatcggc
atcaagctgagcgccatccctgtggtcattctgatcgcctctgtgggcatcggagtggag
ttcaccatccacatcgccctgggcttcctcacagcgattggcaacagaaacaagcgctcg
gctgtggctctggagcacatgtttgccccggtggtcgacggcgcgatctccacgctgctg
agcattctcatgctggccgggtccgagtttgacttcatcatgaggtatttctttgctgtg
ttggccatcctcactgtattggggatgctgaatggcttggtactcctgccagtgatcctg
tccatgatgggcccgccggctgaggtcaccccggttgacaatgccggtcgcctgccgacg
gcttcccccgaaccccaactgcccccgccgatgacccaccacggttactacacgggccac
cacaacccacggtcgcctcgccaacaggccttttcggagtcgtctgactctgagtattac
tccgagatgaccaccacgccgggcgtcggggaggaggactataagtactgtgacatggcg
tcgcacaccagcggtccaccctcaacgtctcacatactgctggaagccagcaaaaacccc
agtttccccaagcttacggtggtgaagccattcaaagacaattcagcgggcaccggcgga
agagtcgaaccctcaaatgaatcttcccacgctgcgcagtcacctctcggctcgcaggtt
acgtgctgggatggtaacaagcgggagccgcagccgggcctccagaggctgcaggcgcaa
cacttacccaacgaaagacctcacttcctcgggaggacttatcagagcggcccccggctg
cagagcggcagagcgcctcagccaaacaggactaaagggccgagctatagcaacagcggc
tccgcgctgccgacgctccactgctccgcggggggacccgtcaccatggtgaccgctaca
gcctccgtgacggtggctgtgcatccgaccttgccggggacggcgtaccaacgctacatg
catgaaggttttgacacggacagcgagtcgggctgttttgaggcggctcagaggacttgt
ggcgacaaaacaaacttttcttcgtgcaagagagactcgttagagctccaggacttggag
gcggcacagagccaggcggagcatccgctcggcaagacgcaaggtgtgttgaggatccag
gcagccaatgattgctag
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integrated database retrieval system
