Pseudoliparis swirei (Mariana hadal snailfish): 130198627
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Entry
130198627 CDS
T09868
Symbol
myom1a
Name
(RefSeq) myomesin 1a (skelemin) isoform X1
KO
K24495
myomesin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130198627 (myom1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
130198627 (myom1a)
Domain-containing proteins not elsewhere classified [BR:
pswi04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
130198627 (myom1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
fn3
Ig_3
Ig_DSCAM-DSCAML_C
Ig_2
ig
V-set
Pur_ac_phosph_N
C2-set_3
Motif
Other DBs
NCBI-GeneID:
130198627
NCBI-ProteinID:
XP_056277832
LinkDB
All DBs
Position
8:6351886..6373383
Genome browser
AA seq
1501 aa
AA seq
DB search
MSGSLQVTQKLQHQQHQHHHHQHHYESSCHLSTKSSVKQQSFSTYKTTSRRQKTTVETEK
GHAVLKLSPLPTRAKRTYLAMDTDKEVIGYVIPVFRANHEVVRGLMEAREEEVTEEGINY
VAMRNLFVREASEVVDVKVEKRTRTTFIRQFAGHLEFNKTLEEWTEFRKKMNPDNLTHLP
EFIIKPRGQTVWEGKTVKLHCTVAGWPRPRMAWYKNNVLIDAKAHPDKYTVESTFNMHSL
EIKNCDFIDTAQYHASALNVKGEVSSVATIVVKRFQEGEEAGPLDPKPHGFCAEHGVTFK
TAIIDKFEVAFGNEGETMSLGCTVIVFPTVKKYQPEVVWSRNSVPLKPSKWVRTHWSGDR
ATLTLTHLNKEDEGLYTLRVNTKSGFDSYSAYVFVRDFEVEVEGVPVAPLDVRCHDANKD
YVVVTWKQPAVEGSSSILGYYIDRCEVGTHHWAQCNDVPVKYARFPVTGLVEGRSYTFRV
RALNQAGVSRPSRVSEAVVAMDPTDRARLRAGPSAPWTGMIKFTEEDPTGGIVPGEPSDV
AVTEATKSYVVLAWKPPVQRGHEGVMYYIEKCISGTDTWQRVNTGMPVKSPRFALFDLEE
SKSYSFRVRCCNSAGVGEASVSTGEIMVGDKLDLPSVPGNPVAIRNTGTSVVVLWGASKE
VKHLVGYYIEYSVVGTEEWMPCNNKPVKQTRFVCHGLTSGSNCVFRVKAVNAAGYSHSSS
NSDAVVVQAAISVPGKATGVTMLEAVKDYMMLAWTQPASNGGADIRGYFVDYRTVKGDVV
GKWHELNLKAVTATSYKAENLKENVFYQFQVHTMNMAGVSKASLATSALECKEWTLTVAG
PPVGLHGLEVRDTSAVVLWEPPAFDGRTPVNGYYLDVKEASAGEQGWKAAHEKVNKMKYM
KVTGLKSGTSYVFRVRAQNLAGVGKPSAVLGPILAQTRPGNNEIYVDVDDDGVISMIFEC
SEMKEGSEFVWSKNYQTMTDTSRMTIVTERGRSRAIFNSPSIEDLGIFSCVVTNTDGLSS
SYTLTEEGLKRLLDISYEHKFPVIPFKSEMAMELLEKGRVRFWTQVEKCTAACQVEYAFN
DVLITQGKKYTMNFNKSTGIIEMFMDSLEVIDEGTFTFNLVDGKAKGTTSMVLIGDEFRE
LQKKSEFERAEWVRKQGPHFVEYLGFTVTTECNVLLKCTIGNVRPETEITWSKDNIEIAE
DDDDAKKIERKDGELTFNIGKCVIKQDKPKGKEGKKPTAEDVAPPPRPKISKADTGIYQV
VLRDDRGKDKSIFHLTDAGYQAVMNELFRVIANSSTELKIISTEHGIMLYSEVTYYNEEQ
RVGWMHKDTKMSASERVTSGVTGEQLWLKINEPTEKDKGKYSMDIFDGKDGVKRTFDLTG
KAWGEAFEEFQRLKAAAIAERNRARVVGGLPDVVAIQQGKSLNLTGNVWGEPAPEVSWTK
NDKTLVSGERYTLKYEHGKFASITIASVTTTDSGKYALLVKNKYGTEAGKFTVSVYNPEE
E
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggatcattacaagtgacgcagaagctgcagcatcagcagcatcagcatcatcat
catcagcatcactatgagagcagctgtcacctgagcaccaagtcgtctgttaagcaacag
tcgttctctacatacaagaccaccagccgtcgccagaagaccactgttgagaccgagaag
gggcacgcggtgctgaaactgagccccctacccaccagagccaaacgcacctacctggcg
atggacacggacaaggaagttatcggctacgtcattcccgtatttagagccaatcatgag
gttgttcgtggtctgatggaggcccgggaggaggaggtcacggaggagggcattaactac
gtggccatgaggaacctgtttgtcagggaggccagtgaggttgtggacgttaaagtggag
aagagaaccagaaccacgtttatcaggcaatttgccggacatctggagtttaacaagacg
ttggaggaatggacagagtttcgtaagaagatgaacccagacaacctgacgcaccttcca
gagttcatcatcaagccccgcgggcagaccgtctgggagggcaagacggtcaagctgcac
tgcactgtggccggatggccgagacccaggatggcctggtacaaaaacaatgtgctcatc
gatgccaaggcccaccctgacaagtacacagtcgagagcactttcaacatgcactccctg
gagatcaagaactgtgatttcatcgacaccgctcagtaccacgcctccgccctcaacgtc
aaaggggaagtttcttctgtggctactatcgttgtcaaaaggttccaggagggcgaggaa
gcgggcccgctcgatccgaaaccacatggtttctgcgccgagcacggcgtcacctttaaa
acagccatcattgacaaattcgaagtggcctttggcaacgaaggcgagacgatgagtctg
ggctgcactgtcatcgtttttcccaccgtgaagaaatatcagccggaggtcgtgtggtcc
agaaactccgtccccctgaagccctctaaatgggtgcgcacccactggtccggggaccga
gccaccctcacactcacccacctcaacaaggaagacgagggcttgtacaccctgcgcgtc
aacaccaaatctggctttgatagctactctgcttacgtgttcgtcagagatttcgaggtg
gaggtggagggggttcccgtggcccctctggatgtgcgctgtcatgatgccaacaaggac
tatgtggtggtcacctggaagcagccagcggtggagggcagcagctccatcctgggatac
tacatcgacaggtgcgaggtgggcactcaccactgggctcagtgtaatgacgtcccggtg
aagtacgcccgcttccccgtcaccgggctggtggaggggcgctcttataccttcagggtg
cgggctttgaaccaggcaggagtcagccgtccatcccgtgtctccgaggccgtggttgcc
atggatcccaccgacagagcccgcctcagagccggcccctcagctccttggactgggatg
atcaagttcacagaggaggatcccactgggggaatcgtccccggagaaccttctgacgtt
gcggttactgaggccaccaagagctacgtggtgctcgcctggaagcccccggtccagagg
ggtcatgaaggagtcatgtattacattgagaagtgcatctcagggacggacacctggcag
agagtgaacaccggcatgccggtgaagtctccccgcttcgccctgtttgacctggaggag
agtaaatcctacagcttccgcgtgcgctgctgcaactccgctggcgtgggcgaggcctcc
gtatccacgggagagatcatggtcggagataaattggacctgccctctgtgccgggcaat
ccagtggccatcaggaacaccggcacctcggtggtggtcctgtggggggcctcgaaggag
gtcaaacacctggtcggctactatatcgaatacagtgtggtgggaaccgaagagtggatg
ccttgcaacaacaaacctgtcaagcagaccaggtttgtgtgccacggcctgacctccggg
tcaaactgcgtgtttcgggtcaaagcggtcaacgccgctggatacagccacagctcctcc
aattctgatgccgtggttgtgcaggcggccatctccgtccctggaaaggccactggtgtg
acgatgctagaggctgtaaaggactacatgatgctggcctggacccagcctgctagcaat
ggaggagcagatatcaggggatactttgtggactacaggaccgtgaagggagacgtagtt
ggaaaatggcacgagttgaacctcaaggccgtgactgctacctcctataaagctgagaac
ctgaaggagaacgtcttctaccagttccaggtgcacactatgaacatggcgggtgtgagt
aaagcctctctggctacttcagctctggagtgcaaggagtggacccttactgtggcaggt
cctcctgttggtctccatgggctggaggtccgtgacacctccgccgtggtcctgtgggag
ccgcccgcattcgacggccgcactccggtcaacggctactatttggacgtcaaggaagcc
tccgccggagagcaaggctggaaggctgctcacgaaaaggtcaacaagatgaaatacatg
aaggtgacggggctgaagtcgggtacatcctacgtcttccgtgtgcgtgctcagaatctt
gctggagttggaaagccctcagcagtgttgggtccaatcctggcccagactcgccctggc
aacaacgagatttatgtggacgttgatgatgacggagtgatctctatgatatttgagtgc
tccgagatgaaggagggctctgagtttgtttggtccaagaattaccagactatgacagac
acctctcgcatgactattgtcactgaacggggcaggtccagagccatcttcaacagtccc
tccattgaggatctgggcatcttctcctgtgtggtcaccaacactgatggcctctcctcc
agctacacactcactgaggagggtctcaagcgtcttctggacatcagctatgagcacaag
ttccctgttattcccttcaagagtgaaatggccatggagctgctggagaagggtcgcgtg
cgtttctggactcaggtggagaaatgcaccgcggcctgccaagtggagtacgcctttaat
gatgtcctcattactcagggaaagaaatacacaatgaacttcaacaagtccaccggcatc
atcgaaatgttcatggactctttggaggtcatcgatgagggaacgttcacctttaacctg
gtggatggcaaggctaagggtaccaccagtatggtgctcattggagatgagttcagggag
cttcaaaagaaatctgagtttgagagggcagaatgggtcaggaagcaaggtcctcacttt
gtcgagtacctcgggttcactgttacgacagaatgtaacgtgctgttgaagtgcacgata
ggcaatgtcagaccagagactgagatcacctggtccaaggacaacattgagattgcagag
gatgatgatgacgcaaagaaaatcgagagaaaggacggcgaactgacctttaatatcgga
aagtgcgttattaagcaagacaaaccgaaaggaaaagaaggaaaaaagccaaccgcagag
gacgttgccccgccaccaagacccaaaatctccaaggcggacacgggtatttaccaggtg
gtcctgagggacgaccgaggcaaagataagagcatcttccatctgacggacgcaggatac
caagctgtaatgaatgagctgttcagggttattgccaactcctccactgagctcaaaatc
atcagcactgaacacggcatcatgctgtactccgaggtcacgtattacaacgaggaacag
cgtgttggatggatgcacaaagatactaagatgtccgcctcagagagagttacgtctgga
gtcacaggagagcagctttggctaaagatcaatgagcccactgagaaggacaaaggcaaa
tactccatggacatcttcgatggcaaggacggtgtaaagagaacatttgatctgactggc
aaggcatggggagaggcatttgaagaattccaaaggctcaaggcggcagccatcgcagag
agaaatcgcgctcgtgttgtcggaggcttgccagacgtggttgcgatccaacagggcaag
tccctgaacctgaccggcaatgtgtggggcgagcctgcgcccgaggtgagctggacgaag
aacgacaagacgctggtatctggcgagcgctacacgctcaagtacgagcacggcaagttt
gccagcatcacaatcgcctccgtcaccacgactgactctggcaagtacgccctcctggtc
aagaacaagtacggcacagaggccggcaagttcaccgtcagcgtctacaacccggaggag
gagtag
DBGET
integrated database retrieval system
