Pseudoliparis swirei (Mariana hadal snailfish): 130198882
Help
Entry
130198882 CDS
T09868
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
VWA_2
Herpes_DNAp_acc
SPOR
DUF4992
Oxidored_nitro
Motif
Other DBs
NCBI-GeneID:
130198882
NCBI-ProteinID:
XP_056277921
LinkDB
All DBs
Position
9:complement(1519982..1563295)
Genome browser
AA seq
1581 aa
AA seq
DB search
MLCFLLGVFLLLSSGVHGQGRLKLTVLSEDRLQMKWKEADGPVQGYKVRVRPISEVPQPE
LMLTTTRGRATVAGLDSGQEYALQVLLLNGTTERLIAKRRFTMEGLREEESIRSGSRVQR
KKTLPGGSGSGDPDDVTEALAGLPTVLYPDSTITTTTTTAAATTEPPAIETPSQPPDEAQ
EKTTKEKRKRKKDRKRDRSKGEDKEEQGGEAEEKPRKTQPVTGASPRKPFECDSGAAADI
VLLVDGSWSIGRTNFRRVRDFLEGLITPFHIGPDRVQIGLTQYSGEPRTEWQLNNFTTKE
QLLEAVRGFRYKGGNTFTGQALLHVMEENMNPAAGARSGAPFFLVLLTDGKSQDDAVAAA
SRLKSAGVEIIAVGVKNADEAELRQVASEPLDLNVYNVNDFPLLSRLLARLVHVLCGKIK
ERGISKRMEPEPTADPALSYPSPTDLRFSDLGSREVRLHWINPSQPVGQHRVVYHSAEGP
SPQEVVLSGSESSVLLDGLSSQTLYHVSVFPVYEDNVGVALRGTVTTLPLATPADLEVTP
QSYSTLRVSWASAPGATQYMILYSALNHGEPDDAKEEKFRGGQTAVQLSGLLPATDYSVT
LYALYGEEPSDPATAVASTLPLPAPGGLQFPMVTHSLLRVSWVPGAVDVPGHRITYSTNH
GSDVQQVEVEGLNSLLLQNLSSLSRYLVSVQSHYPEGLSAGVTGNISTLKVPSPSDFRVT
NFSGGDITVRWEAAAADVVSYLLKWISLSGGDLRQLRAGGQSEGATLQGVEVDKEYQISL
SALYADGAQSDAVATRYNTLSGGGPSGLSVTEETAVSLAVGWVPPNAHVLRYRVSYTALT
AAEAQDRTVLVPGGEKRAVLESLQPDTRYSILVTAEYRDREGGSGSAQGKTTSLRVSSVS
VVRSDHSSICVSWRPVSAVDGYRIVVQSVKDKQVKEQTVDRSSSSLCFTELQPETLYRIS
VHSLLGPAEGAAVSILHPTATAPSRIPLQPWMYPVHNEVCPEVTIRHSRVNGFDMMEAFG
LTERAHSSVDGVAAEPFVFNAMPAYTLYRDVQLTQSTRFIHPAGFSPEHTISISFRVLQD
SPREPFALWQLTDNDFQPQMGVVLDPTTKQLLYFSLDYRGEVQELTFDQQEVHRLFYGSF
HKVHLSVSQVGVSLSVDCQRVGERPARPLGSLPTDGFEMLGKLVKTRGPNSGSAQFQLQS
FEIVCNTTWALEDSCCDLPGARDEVSCPVPAYTCTCSSDIPGASGSLGPNGRPGSRGEKG
EKGEQGLKGEVGPPGKPGLEGGLGALGTTGPRGIAVQGKAGPPGARGGKGDPGRPGVQGL
PGPPGPAGELGPPGPQGIRGLEGNIGGPGLTGPRGFQGMPGHPGHIGERGFSGAVGPTGL
SGGKGERGEKGEPQSMAIIYQLVTQACEQLVHKEVLKLDMFINQMSRKPAPIEEPAGPPG
EPGIPGPKGPPGARGTQGRVGPRGTPGRSAYPGEQGRRGTPGGKGGPGANVQGSPGVTGL
AGLPGESKLGSLGPKGEDGKPGPLGTAGPPGQPGELGPAGACDGSGGCQRVAQQPGELPG
NAHRRRPNEGLRSGRLVSSGR
NT seq
4746 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgcttcctgctcggcgtcttcctgctgctgtcctcgggggtccatggccaaggt
cgcctgaagctgacggtcctgtctgaggaccggctgcagatgaaatggaaggaggccgac
gggccggttcagggctacaaggtccgagtgagacccatctcagaggtgccgcagccggag
ctgatgctgaccaccacgcggggccgggccaccgtggcagggctggactccggccaggaa
tacgccctccaggtcctcctgctcaacgggaccaccgagagactcatcgccaagcggagg
ttcaccatggagggtctgcgggaggaggaatcgatccgcagcggcagtcgggtgcagagg
aagaagacgctgccgggcgggtcggggtcaggagacccggacgatgtgacggaggctctg
gcaggcctgcccacggttctgtatccagactccaccatcaccaccaccaccaccactgct
gccgctactacagagcccccagccatagaaaccccctctcagccccctgacgaggcccaa
gagaaaaccaccaaggagaagaggaagaggaagaaggacagaaagagggatcggtccaaa
ggggaggataaggaggagcagggcggagaagccgaggagaaaccccggaagacccaaccg
gtgacaggtgcgtctcctaggaaaccgttcgagtgtgacagcggcgcggcggcggacatc
gtcctgctggtggacggctcctggagcatcgggcgcaccaacttcaggcgggtccgagac
ttcctggagggcctgataacgcccttccacatcgggcccgaccgcgttcagatcgggctg
acccagtacagcggagagccccggaccgagtggcagctcaacaacttcaccaccaaggag
cagctgctggaggccgtgaggggcttcagatacaagggaggcaacaccttcacaggccag
gcgctgctccacgtcatggaggagaacatgaaccccgcggcgggcgccaggtcgggcgct
cccttcttcctcgtgctgctgaccgacgggaagtctcaggacgacgccgtcgccgccgcc
agccggctgaagagcgccggcgtggagatcatcgccgtgggtgtgaagaacgccgacgag
gccgagctgaggcaggtggcgtcggagccgctggacctgaacgtctacaacgtcaacgac
ttcccgctgctcagccggctgctggcgaggctggtgcacgtcctgtgtgggaagatcaag
gagcgcggcatctccaagcgaatggagcctgagcccacggccgacccggccctctcctac
ccgagtcccaccgacctccgcttctccgacctgggctccagggaggtccggctccactgg
atcaacccctcccagccggtcgggcagcaccgggtcgtctaccacagcgccgaggggccg
agtccacaggaggtggtgctgtctggctcggagtcctccgtgctgctggacggcctctcc
tcccagacgctgtaccacgtgtccgtcttcccggtgtacgaggacaacgtcggcgtggcg
ctcagaggaaccgtcaccacactgcccctggccacgcccgccgacctggaggtgacccct
cagtcctacagcaccctgagggtgagctgggcctcggcacccggagccacgcagtacatg
atcctctactcggctctgaaccacggggagccggacgacgccaaggaggagaagttccgc
ggcggccagacggcggtgcagctgtccgggttgctgccggccaccgactactcggtgact
ctgtacgctctgtacggcgaggagcccagtgaccccgccaccgccgtggcctccacgctc
cccctcccagctccagggggcctccagttccccatggtgacccacagcctgctgagggtg
agctgggttcctggagccgtggacgtgccgggtcaccggatcacctacagcaccaaccac
ggcagcgacgtccagcaggtggaggtggagggtctgaactcgctgctgctgcagaacctc
tcatctctctccagatacctggtgtcagttcagtctcattacccagaaggcctttctgca
ggggtcaccgggaacatcagcacactgaaggttccttccccgtcagactttcgggtgact
aacttctctggcggtgacatcacggtgcgctgggaggcggccgccgccgacgtcgtgtcc
tacctcctcaagtggatctccctcagcgggggggacctgagacagctgcgggcggggggg
cagagcgagggcgccaccctgcagggcgtggaggtcgataaggagtaccagatctcgctc
tcggcgctctatgcagacggagctcagagcgacgcggtggccacgcgctacaacacgctg
tcgggcggaggcccctccggcctgtcggtgacggaggagacggccgtcagcctggcggtg
ggctgggttcctcccaacgctcacgtgctccggtaccgcgtctcctacacggcgctgacc
gcggccgaggcccaggaccgcaccgtgctggtccccgggggagagaagcgggcggtgctt
gagtcgctgcagccggacactcggtacagcatcctggtgacggccgagtaccgagaccgg
gagggaggcagcgggtcggctcaggggaagaccacgagcctgagggtgagcagtgtgagt
gtggtccggtcggatcactccagtatctgtgtgtcttggaggccggtgtcagctgtggat
ggatatcgtatcgtggtgcagtccgtcaaagacaagcaggtgaaggagcagaccgtggac
cggtccagcagcagtctctgcttcacggagctgcagccggagactctgtatcgcatcagc
gtgcactccctcctgggcccagcagagggcgccgctgtgtccatcctccaccccacagcc
acagctccttccaggatccccctccagccctggatgtacccggtgcacaacgaggtttgt
cccgaagtcaccatcagacacagccgcgtgaacggcttcgacatgatggaggccttcggc
ctgacggagcgcgcccactcgtccgtggacggcgtggcggccgagcccttcgtgttcaac
gccatgccggcctacacgctgtacagagacgtgcagctcacgcagagcaccaggttcatc
caccctgcgggcttctcccctgaacacaccatcagcatctccttccgcgtgctgcaggac
tcgccccgcgagcccttcgccctgtggcagctcaccgacaatgacttccagccccagatg
ggagtcgtgctggacccgaccaccaagcagctgctgtacttcagcctggactacaggggg
gaggtgcaggagctgaccttcgaccagcaggaggtccaccggctcttctacgggagcttc
cacaaggtgcacctgtccgtcagccaggtgggcgtgtccctgtcggtggactgccagcgt
gtgggcgagcggccggcccgccccctcggcagcctgcccaccgacggcttcgagatgctc
ggcaagctggtgaagaccagagggccgaacagcggctcggcccagttccagctgcagtcc
tttgagatcgtctgcaacaccacgtgggctctggaggactcctgctgcgacctgccgggg
gcgagagatgaggtgagctgccccgtcccggcctacacctgcacctgctcctccgacatc
cccggagcctccggttccctggggccaaacggaaggccaggttctcgtggtgagaaaggc
gagaagggcgagcaaggcctgaagggggaggtgggtcctccagggaagcctggactggag
gggggtctgggggccctgggcaccacggggccccgaggcatcgccgtgcagggcaaagcg
ggtccacctggtgcccgaggggggaagggagatcctggtcgaccaggggtccagggtcta
ccgggacctccgggtccagcgggagagctggggcctccaggccctcagggcatcaggggc
ctcgagggaaacatcggtggacccggtctcaccggaccccggggtttccagggaatgccc
ggccacccggggcacatcggggagcgaggcttctctggagcagtgggacctacgggtctg
tcggggggtaaaggggagcgaggagagaagggggagccgcagtccatggccataatctac
cagctggtcactcaggcctgtgagcagctggtgcacaaggaggtgctgaagctcgacatg
ttcatcaaccagatgagtcgtaagccggcccccatcgaggagcccgcggggccccccggg
gagccgggcataccggggcccaagggccccccgggcgccaggggcacccaggggcgcgtg
ggcccccgggggacccccggcaggtctgcgtacccaggagagcaagggagaagaggaacg
ccgggggggaaaggaggcccaggggccaacgtccaggggtcaccaggggtcacggggttg
gcaggtcttccgggggagtccaagctgggcagtctgggtcccaaaggagaggacggtaag
ccaggacccctggggaccgccgggcccccagggcagcccggcgagctcggcccggcgggg
gcgtgtgacggcagtggaggctgccagcgcgttgcccagcaaccaggtgagctaccgggg
aacgctcacagacgacggccaaacgaaggcctgagaagcgggcgcctcgtgtccagcggg
cgctga
DBGET
integrated database retrieval system
