Pseudoliparis swirei (Mariana hadal snailfish): 130199043
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Entry
130199043 CDS
T09868
Symbol
slc6a1a
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 1a
KO
K05034
solute carrier family 6 (neurotransmitter transporter, GABA) member 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
130199043 (slc6a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pswi02000
]
130199043 (slc6a1a)
Transporters [BR:
pswi02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
130199043 (slc6a1a)
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Gene cluster
GFIT
Motif
Pfam:
SNF
DUF1842
Motif
Other DBs
NCBI-GeneID:
130199043
NCBI-ProteinID:
XP_056278200
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Position
9:23926149..23933476
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AA seq
720 aa
AA seq
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MATNGTKTEGGQVTELNDVATNNERPESLEVRGAAAAAVTQQQQQPPALPERETWGGRFD
FLLSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGMPLFLLETSLGQYTSIGG
LGVWKLAPMFKGVGMAAAVLSFWLNIYYIVIISWAIYYLYNSFTTELPWSSCNNVWNTEK
CYTNHSILDTTNLTSSVVEFWERNMHEMTDGLEKPGTIRLPLAITLAVAWVLVYFCIWKG
VGWTGKVVYFSATYPYFMLFILFIRGVTLPGAVDGILFYITPNFQKLKESEVWLDAATQI
FFSYGLGLGSLIALGSYNPFNNNVYKDSIIVCCINSCTSMFAGFVIFSIIGFMSHVTKRP
IADVAASGPGLAFLAYPEAVAQLPVSPLWAILFFSMLLMLGIDSQFCTVEGFITALMDEF
PKVLRGRREIFIAVVCLVSYVIGLSNITQGGIYVFKLFDYYSASGMCLLFLVFFECISIS
WFYGVDKFYDNIQEMIGYRPCIWWKMCWVVFTPLIVGGVFLFSAIQMVPLKMGDYVFPGW
GQGVGWLMALSSMVLIPGYMIYMYLGLKGTYKERLQIMLRPPAVVRRAVENVPEQQAETD
AAKLSSPADPASPAASPAGPAPVIAAAAASPVNPANPAPAPANPVAAAASAVSPVTQATS
PAPNITITTTSSSTATTASPANPATTTVSPTGPPPNPASPAAPANPTSPTSNLTNAEANV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaacggcaccaagacggagggcggacaggtcacagagctgaacgacgtggcc
accaacaacgagcggcccgagtcactggaggtgcgcggcgccgccgccgccgccgtcacg
cagcagcagcagcagccgccggcgttacccgagagagaaacgtggggagggagatttgac
ttcctcctgtcgtgtgtgggttacgcaattggactgggcaacgtgtggaggttcccctat
ctctgtggaaagaacggtggaggagccttcttgattccctattttttgactctcatattt
gctgggatgcccttgttcctcctggagacctccctgggtcaatacacctccattggaggg
ctcggtgtgtggaaactggctccaatgtttaaaggtgtgggcatggcagcagccgtcctg
tccttctggcttaacatttactacattgtcatcatctcttgggccatttactacctgtac
aactccttcaccactgaacttccatggagctcatgtaacaacgtgtggaacacagagaaa
tgttacaccaaccactccattctcgacaccaccaacctcaccagttcggtggtggagttt
tgggagcgcaacatgcacgaaatgaccgacggcctggaaaaaccaggcacgattcgactg
ccgctggcgataacgctggccgtcgcctgggtcctggtgtacttctgcatctggaaaggg
gttggctggacagggaaggtcgtctacttctcggccacgtacccctacttcatgctgttt
attctcttcatccgcggcgtgactctccccggagcggtggacggaatcctgttctacatc
acccccaacttccaaaaactcaaagaatcggaggtatggctggatgcagctacccagatc
tttttttcctacggattgggattggggtcacttatagctctgggcagctataacccgttc
aacaacaacgtgtacaaagactccatcatcgtgtgctgcatcaactcgtgcaccagcatg
ttcgccggcttcgtgatcttctccatcatcggcttcatgtcgcacgtgacgaagagaccc
atcgccgacgtcgcggcttcgggtcccggcttagctttcctggcctacccggaggccgtc
gcccagttgcccgtgtctcctctctgggccattctgttcttctccatgctgctcatgctg
gggatagacagccagttctgcaccgtggaaggcttcatcaccgccctgatggacgagttc
cccaaagttctcaggggccgacgagagatcttcatcgcggtcgtctgtctggtgtcgtat
gtgatcggactttcaaacatcacgcagggcggaatctacgtgttcaagctgttcgactac
tactctgccagtgggatgtgtctgctgttcttggtcttctttgaatgcatctccatatcc
tggttctacggtgtggacaagttctacgacaacatccaggagatgattggctacaggccc
tgcatctggtggaagatgtgctgggtggtgttcaccccgctcatcgtcggcggcgtgttc
ctgttcagcgccattcaaatggttcctctgaaaatgggagactatgtgttcccgggctgg
ggtcagggagtgggctggctcatggcgctgtcctccatggttctcataccgggatacatg
atctacatgtatctgggcctcaagggcacgtacaaagagcgtcttcagatcatgctcagg
cctcctgcggtcgtcaggcgagctgtggagaacgtacccgagcagcaggcggagaccgac
gcggcgaagctatccagccccgcggaccccgccagccccgccgccagccccgccggcccg
gctccggtcatcgccgccgccgccgccagccccgtaaaccccgctaacccggctcctgcg
ccagctaatccagtcgccgccgcagctagcgccgttagcccagtgacccaggctactagt
cccgcccccaacatcaccatcaccaccaccagcagcagcaccgccaccacggcgagtccg
gcgaaccccgccacgacaactgttagcccgaccggcccgccgcccaacccggcgagccca
gcggcgcccgcgaacccaaccagcccgacctctaacctgaccaacgccgaggccaacgtg
tag
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