KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130199077
Entry
130199077         CDS       T09868                                 
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
  KO
K19719  collagen type II alpha
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04510  Focal adhesion
pswi04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130199077 (col2a1a)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130199077 (col2a1a)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:pswi00536]
    130199077 (col2a1a)
Glycosaminoglycan binding proteins [BR:pswi00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130199077 (col2a1a)
SSDB
Motif
Pfam: Collagen COLFI VWC Amnionless
Other DBs
NCBI-GeneID: 130199077
NCBI-ProteinID: XP_056278267
LinkDB
Position
9:complement(22570826..22598908)
AA seq 1487 aa
MFGFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCIQDDRQYNDKDVWKPEPCRICVC
DSGAVLCDEIICEEIRECANPLIPSGECCPVCPADASAPFETIGAQGQKGEPGEITDVVG
PKGPRGPMGPSGEQGGRGEAGDKGDKGNIGPRGRDGGPGIPGNPGAAGPPGPAGLGGNFA
AQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGGPGEAGEPGPAGALG
PRGPSGLSGKPGSDGDAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHNGLDGAKG
ETGAAGAKGEAGSSGENGASGPMGPRGLPGERGRSGAAGSAGARGNDGLPGPAGPPGPLG
PAGAPGFPGSPGSKGEAGPTGTRGSEGAQGPRGESGTPGSPGPSGASGNPGTDGIPGAKG
SAGGAGIAGAPGFPGPRGPPGPQGATGSLGPKGQSGDPGLPGFKGEAGPKGELGPIGPLG
GPGPSGEEGKRGARGEPGTAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGVGGDPGRTGESGLPGARGLTGRPGDAGPQGKGGPSGAAGEDGRPGPPGPLGARGQPG
VMGFPGPKGANGAAGKGGEKGLVGRPGLRGLSGKDGETGNSGPSGPAGPVGERGEQGQPG
PSGFQGLPGPSGAPGEGGKPGDQGISGEGGVPGAVGPRGERGFPGERGGAGAQGLQGPRG
IPGTSGSDGPKGAIGPSGSAGSQGPPGLQGMPGERGTGGITGAKGDRGDNGQKGPEGASG
KDGGRGLSGPIGPPGPSGPNGAKGETGIAGPNGATGVRGAPGDRGEVGPHGPAGFAGPPG
LDGQPGVKGELGESGQKGEGGSLGPQGPSGAPGPVGPTGVTGSKGARGGQGAAGATGFPG
AAGRVGSPGPNGNPGSAGPAGSAGKDGPKGARGDAGLTGRHGDVGLRGAAGSQGEKGESG
EDGPPGVDGPSGPSGLGGSRGIVGLPGQRGERGFAGLPGPSGEPGKQGSSGSSGDRGPPG
PVGPPGLSGPSGETGREGTGGADGPPGRDGALGVKGERGNTGPAGAPGARGAPGSTGPVG
PLGKQGDRGEGGAQGPAGPSGPSGARGMAGPQGPRGDKGESGETGERGQKGHRGFTGLQG
LPGPPGSAGDSGAAGPAGSSGAKGPSGPSGPAGKDGSNGQLGPIGPPGPRGRSGESGQSG
PPGNAGPPGPPGPPGPGIDMSAFAGLGQMEKSPDPLRYMRADEASGSLRQHDVEVDSTLK
TLNSQIENLRSPDGSQKNPARTCRDLKLCHPEWKSGNYWVDPNIGSIADAIKVFCNMESG
ETCVSPSIAEVPRKNWWTSKGKDRKHVWFGETMNGGFHFDYAEDGPIANAASVQLTFLRL
LSTSASQNLTYHCKNSVAYLDQATGNLKKALKLQGYNDVELRAEGTSRFTYTVLEDGCKK
HTDRWGKTVFAYKTQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq 4464 nt   +upstreamnt  +downstreamnt
atgttcggctttgtggattcaaggactgttctgctacttgtagcatcgcaagttgtttta
ctatccgtggtcagatgtcaggaggaggacgaccaggaggcaggtggctgcatccaggac
gaccggcagtataatgataaggatgtgtggaagcccgagccgtgtcgcatctgtgtgtgc
gacagcggagcggtgctgtgtgatgagatcatctgcgaggagatcagagaatgtgccaac
cctctcatcccatccggagagtgctgccccgtctgccccgctgacgccagcgcccccttt
gagacaattggtgctcagggccaaaaaggtgaaccaggagagattacagatgttgtcgga
ccaaaaggaccacggggccccatgggcccctcaggtgagcagggaggacgcggagaagct
ggcgataagggtgataagggaaatattggacctcgtggaagagatggggggcccggcatc
cctgggaaccccggagccgccggcccacctggaccagcaggactcggagggaactttgct
gctcagatggccggaggctttgatgagaagtccggaggcgctcagatgggcgtgatgcag
gggcccatgggtcccatgggccctcgtggaccccctggacccagcggggctcctggccca
caaggtttccaaggtgggcctggagaggccggagagcccggtcccgctggagcactggga
cctcgtggaccatctggactttctggaaaacctggaagtgatggtgatgctggaaaacct
ggaaaagctggtgagcgtggacctgcagggcctcagggagctcgtggattccctggaacc
cctggacttcctggaatcaaaggacacagaggtcacaacggtctggatggagcaaaggga
gagaccggtgccgcgggagccaagggcgaggccggttcctccggagagaacggcgcctct
ggacccatgggtccacgtggtctccctggtgagagggggcgttcaggagccgccggatct
gctggtgcccgtggaaatgatggcttgcccggtcctgctggtccacctgggccccttggt
cctgctggagctcccggtttcccaggatctccaggatccaagggagaagctggtccgact
ggaacccgtggatctgaaggagcacaggggcctcgcggagagtccggtaccccaggatcc
cccgggccctccggagcatcgggcaaccccggtactgacggtattcctggagctaaagga
tccgccggcggcgccggtatcgctggtgctcccggattccccggacctcgtggcccaccc
ggaccgcagggagccaccgggtctctggggccaaagggacagtctggagaccccgggctt
cctggattcaaaggtgaagctggacccaagggagagcttggccccatcggtcctctcgga
ggccccggcccgtctggcgaggaaggaaagagaggcgccagaggagagcccggaaccgcc
ggaccactcggacctccaggagagagaggagctcccggtaaccgtggtttcccaggtcag
gacggtcttgctggtgctaagggggcccctggcgaccgcggtgttcctggtgctgctggg
cccaaaggtgtcggtggagaccccggacgcacaggagagtccggcctccccggagccaga
ggtctcaccggccgtcccggagatgccggtcctcaaggcaaaggcggaccctctggagcc
gctggcgaggacgggcgccccggcccacccggccctctgggagcccggggccagccgggc
gtgatgggattccccggcccaaagggagccaatggtgcagctggaaagggaggagagaag
ggtctcgtgggtcgtcctggtttgagaggtctgtctggaaaggacggagagacgggtaat
tctggaccttctggccccgctgggcccgtcggagagaggggggagcagggacagcccgga
ccctctggcttccagggtctgcctggaccctctggggccccgggagagggaggaaaaccc
ggagaccaaggtatttctggagagggcggagttcccggtgctgttggacccagaggggag
cgtggtttccctggtgagaggggtggtgctggagctcagggtcttcagggacctcgtgga
attcccggaacatctggatctgacggacccaagggagccattggaccttctggctctgct
ggatcccagggcccccccggcctgcagggtatgcctggagagagaggaactggtggaatc
acaggagccaagggagaccgaggtgacaacggacagaaaggccccgagggagcttctgga
aaggacggaggaagaggtttgagcggtcccatcggccctcctggcccatctggacccaac
ggcgccaagggtgaaactggaatcgctggccctaatggtgctactggtgtccgtggtgct
cctggcgaccgtggagaggtcggtcctcatgggcccgccggctttgctggacctcctggt
ttggatggtcagcccggtgtgaagggagagctcggagagtctggacagaagggagaaggt
ggttctcttggacctcaggggccatctggggcacccggacctgtgggacccaccggggta
actggatctaaaggagcacgtggtggtcagggtgctgccggtgctactggtttccctggt
gccgctggccgagttggatctcctggccccaacggcaacccgggctctgccggccccgct
ggctccgccggtaaagacggcccaaagggcgcccgtggcgacgccggcctcacgggaaga
cacggagacgtcggtctgcgcggagctgcgggctcacagggagagaagggagagtccgga
gaggacgggccacctggtgtcgacgggccttcaggtccgtcgggtctgggcggatctcgc
ggtattgttggcctgcccggtcagcgtggagagagaggtttcgctggtctccctggacct
tctggagagcctggtaaacaaggatcctctggatcctctggtgaccgtggacctcctggg
cccgtgggaccccctggactttctgggccttctggagagaccggcagagagggtaccggt
ggagccgatggacctcctggtcgagacggagctctcggagtcaagggagagcgaggaaac
accggtcccgccggcgcccccggagctcgcggcgcccccggatccaccggacccgtcgga
cccctcggcaagcagggagacagaggagagggcggcgctcaaggacctgcaggaccttct
ggacccagcggcgccagagggatggctggaccccaaggaccacgtggggacaagggagag
agcggcgagactggagagaggggacagaagggccaccgcggcttcaccggtctgcagggt
cttcccggacccccgggttctgctggcgactccggagccgccggaccggccggatccagc
ggagcgaagggaccatctggaccatccggacctgctggcaaagacggatcaaacggtcag
ctcggccccatcggaccccccggccctcgtggacgttctggagaaagtggccaatctggt
cctcctggtaacgccgggccccctggcccacccggtcctcccggcccgggcatcgacatg
tcggccttcgccggtctgggtcagatggagaagtcccccgatcctctcaggtacatgagg
gccgacgaggcctccggctccctgaggcagcacgacgtggaggtggactccacgctgaag
acgctcaacagccagatcgagaacctgcgcagccccgacggcagccagaagaacccggct
cgcacctgcagggacctgaaactgtgccaccccgagtggaagagcggtaactactgggtg
gaccccaacatcggcagcatcgccgatgccatcaaggtcttctgcaacatggagagcgga
gagacctgcgtctccccgagcatcgccgaggtaccgaggaagaactggtggaccagcaag
ggcaaggaccgcaaacacgtctggttcggagagaccatgaacggaggattccacttcgac
tacgccgaagacggccccatcgccaacgccgccagtgtccagctgaccttcttgaggctt
ctgtccacctcggcgtcccagaacctcacgtaccactgcaagaacagcgtggcctacctg
gaccaggccacggggaacctgaagaaggccctgaagctgcagggctacaacgacgtggag
ctccgcgcggagggcaccagtcgcttcacgtacaccgtgttggaggacggctgcaagaaa
cacactgaccggtggggcaagaccgtctttgcgtacaaaacacagaagacctcccgtctg
ccaatcgtggacattgctcccatggacatcggaggagcggatcaggagttcggagtggaa
gtcggcgcggtctgcttcttgtag

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