Pseudoliparis swirei (Mariana hadal snailfish): 130199202
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Entry
130199202 CDS
T09868
Name
(RefSeq) dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1-like
KO
K04857
voltage-dependent calcium channel L type alpha-1S
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04010
MAPK signaling pathway
pswi04020
Calcium signaling pathway
pswi04260
Cardiac muscle contraction
pswi04261
Adrenergic signaling in cardiomyocytes
pswi04270
Vascular smooth muscle contraction
pswi04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130199202
04020 Calcium signaling pathway
130199202
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
130199202
09153 Circulatory system
04260 Cardiac muscle contraction
130199202
04261 Adrenergic signaling in cardiomyocytes
130199202
04270 Vascular smooth muscle contraction
130199202
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130199202
Ion channels [BR:
pswi04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
130199202
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
CAC1F_C
Motif
Other DBs
NCBI-GeneID:
130199202
NCBI-ProteinID:
XP_056278471
LinkDB
All DBs
Position
9:complement(13446482..13465974)
Genome browser
AA seq
1832 aa
AA seq
DB search
MAANTNYKLVIMNEEELKRKQREKLKKLQATGGNPRPARTLFLFNLKNPFRKACTSVVEW
KTFEIIILLTIFSNCIALAVFMPMPEEDTNNTNINLESLEYIFLIVFTSECFLKIVAYGL
VFHEGAYLRNCWNILDFVIVVMGLFTFALDTINMIAGVPMEKGGGFDMKALRAFRVLRPL
RLVSGVPSLQVVMSSILKSMLPLLHIALLVFLLVTIYAIMGLELFKCKMHKTCYYTGTNI
YSIAEGEPPSPCAQAGNGRRCMINGSECRPGWEGPNNGITHFDNIGFAMLTVFQCITMEG
WTKVLYWINDAIGNEWPWVYFVPLILLGSFVVLNLVLGVLSGEFTKEREKARSRGEFQKL
RETQQLDEDVHGYMEWITYAEVLDADREGKGLLSLTRDSDTDSLYDLDGKSRIVYYYRLA
RRWNRFFRMKCLVYVKTTGFYWLVIFLVLLNTLIIATKYHHQPHWLTAVQDVASRMLLVL
FVVEMFVKMYALGPRGYFMSLFNRFDFFVVLCGILEMIMFSAGAVAPLGFSVLRCIRLLR
ILKVTKYWTSLSNLVASLLNSVRSIACLLLLLFLFIVIFSLLGMQVFGGKFNFTNQRPRR
SNFDNFPQALISVFQILTGEDWTSIMNNGIMAYGGPAFPGIMVAIYFIILFVIGNYILLN
VFLAIAVDNLTEAESLTSAQKEKAEENLKRKLRRSKMPEKTDEERERMAKKLAEQRAKME
VMPTTATLKIDVFEANVNEVKDPFPPDDFPGDDEEVEPDIPMSPRPRPMADLQLKEEAVP
LPEASSFFIFGPQNKIRKLCHKIINASVFTNLILLFILLSSISLAAEDPIDPKSYRNKIL
ASADIIFTTVFTIEIVLKMTVYGAFMHEGSFCRNSFNILDLIVVSVSLLSMGMESSAISV
VKILRVLRVLRPLRAINRAKGLKHVVQCLFVAIKTIGNIVLVTMLLNFMFACIGVQLFKG
KFYSCTDSSKMTGEECQGLFVKHMEDSLQDTVLAKREWINSDFNFDSVLSGMLALFTVST
FEGWPKLLYRAIDSDEEDKGPVFNNRVDVSIFFIIYIILIAFFMMNIFVGFVIVTYQKEG
AQEYKDCELDKNQRQCVQYALKARPLRCYIPKNPYQYKVWYIVTSCYFEYLMFFLIMLNT
LCLGMQHCNQSDHVTKLSDTLNVIFTVLFTVEMILKLMAFKARGYFGDPWNVFDFVIVIG
SVVDVILSEVDSALAASGGLYCLHGCADTNPLQAIAASENASVSITFFRLFRVMRLVKLL
NRSEGIRNLLWTFIKSFQALPHVALLIIMLFFIYAVVGMQIFGKVALVDGTQVNRNNNFQ
TFPQAVLMLFRCATGEAWQEVMMASMYGKKCDAMSDFLPGEEFTCGSNFAVFYFLTFYCL
CAFLILNLFVAVIMDNFDYLTRDWSLLGPHHLDEFKKTWAEYDPEATGRIQHLDVLTLLR
SLQPPLGFGKFCPHRDACKRLIGMNMPLNSDGTVTFNATLFALVRTALKIKTEGNFEQAN
EELRAIIKSIWKRTSMKLLDQVIPPIGDDEVTVGKFYSTFLIQEHFRKFLKRQEEYYGYR
PSKKNASGPEIQAGLRSSDDEVAPEMHRAISGDLLNEEEIDKAMEEAGEEGIYHRTHDLF
GNRVDSFSTEPVNTQAQQMTNQRPLKFSESQPESPPNSAAMVPATEFFPTIEPKSNTNNN
AFAEYSFDREGSREDFYNLSDDLERVHSWNFTVKTGKTQLLYDPNYGDSQRTAADQLVQE
ALVEGGLASLAKDPGFVSVTKEEMADAMHTTVNEMESVARGILSERAGSVTSIKKRHPVP
PAAAAGQPDPAVRRKRRPIQLIPSVQEGDSKV
NT seq
5499 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaatacaaattacaagctggtcatcatgaatgaagaggagctgaagaggaaa
cagagagagaagctgaagaagctacaggccacagggggaaaccctcgacctgcgagaacc
ctcttcctcttcaacctcaaaaaccccttccgcaaggcctgcaccagcgttgtggagtgg
aaaacctttgagatcatcatcttattgaccatcttttcaaactgcattgcgttggccgtg
ttcatgcccatgcctgaagaagacaccaacaacaccaacataaacttggagagtttggag
tacatcttcctgatcgtgttcacgtcagagtgctttctgaagatagtggcgtatgggctc
gtgttccatgaaggcgcctatttacgtaactgttggaacatattggactttgtcatcgtc
gtcatgggtctcttcacctttgccttggataccatcaatatgatagcaggcgtgccgatg
gagaaaggcggggggtttgacatgaaggcactgagagccttcagagtgctgcggccctta
cgtctcgtctctggagtccccagcttgcaagtggtgatgagctccatcctgaaatccatg
ctgcctctgctgcacattgccctcctggtctttctcctggtcaccatctatgccatcatg
ggactggagctattcaaatgcaaaatgcataaaacatgctattacactggcacaaacatc
tattccatagcagaaggcgagccaccgtcaccctgtgctcaggctggtaacggacgccgc
tgcatgatcaacggctctgagtgtcggccaggctgggagggtcccaacaatggcatcacc
cactttgataacatcggctttgccatgcttacagtcttccaatgtatcaccatggaggga
tggaccaaagttctctactggattaatgatgccatcggaaatgaatggccctgggtctac
tttgttcctctcattctgcttgggtcctttgttgtgcttaatttggttctgggcgtgctc
agtggagaatttaccaaagagcgagagaaggcccggtcacgtggagagttccagaagtta
cgagagactcagcaactggatgaagacgtgcacggctacatggagtggatcacttacgct
gaagtcctggatgctgaccgagagggcaaaggactcctgtctttgacccgcgactctgac
acagacagcctgtatgacctggatggcaagagtcgaattgtctactactatcgcctggcc
cgtcgctggaaccgtttcttccggatgaagtgtctggtgtatgtgaaaaccacgggcttc
tactggctagtgatttttctcgtcctcctcaacaccctgatcatagcaacaaagtaccac
caccagcctcactggctcacggccgtacaagatgtggccagtcgtatgctgctggtgctg
tttgtcgtcgagatgtttgtgaagatgtatgctctgggtccacgaggatatttcatgtcc
ctattcaaccgctttgacttctttgtggtgctctgcggtatcctggagatgattatgttc
tctgcaggagccgtggctcccttgggtttctctgtactccggtgtatccgactgctgagg
atccttaaagtcacaaagtactggacctctttgagtaatcttgtggcttctctcctcaac
tctgtacgctccattgcctgcctgctccttctcctcttcctcttcatcgtcattttctca
ctcctgggaatgcaggtgtttggagggaaattcaactttaccaaccaaagacccagacgc
agtaactttgacaacttccctcaggccctcatcagtgtttttcagatcctaacaggagag
gactggaccagcataatgaataatggcattatggcctatggaggacctgcctttcctggc
atcatggtcgctatctacttcatcatcctctttgtcattggaaactatatcctcctcaat
gtcttcttggctattgccgtcgacaacttgaccgaagctgagagtttgacttcagctcag
aaagaaaaggcggaggagaatttgaaaagaaagttaagaaggtccaaaatgcctgagaag
actgacgaggaaagggaaaggatggctaagaaactggcagagcagagagccaagatggag
gtcatgcccacaacagccacgctcaaaattgacgtgtttgaggccaatgtcaatgaggtg
aaagatcctttcccacccgacgactttccaggtgatgacgaggaggtagagcctgacatc
cccatgagtcctcggcctcgaccaatggccgacctgcagctgaaggaagaagccgttccg
ttgcctgaagccagctcctttttcatttttggcccacagaacaagatccgtaaactgtgc
cacaagatcatcaacgcctccgtcttcaccaatttaatccttttgttcatcctgctctcc
tccatctccctggcagctgaggaccccatcgatcccaagtcctacagaaataagatattg
gcctctgctgacatcatcttcacaactgtgttcaccattgagattgtcctaaagatgaca
gtttatggagcattcatgcacgagggctccttctgccgcaactccttcaacatcctggat
ctgattgtggtttcagtctctctgctttctatggggatggaatccagtgccatctctgtg
gtgaagattctcagggtgctgagggtgctgaggcctctcagggccatcaatagagccaaa
gggttaaagcatgtggtccaatgtttgtttgtggccatcaaaaccatcggcaacatcgtc
ctggtcaccatgctgcttaatttcatgtttgcctgtatcggagtgcagctcttcaagggt
aaattctacagctgcacagactcgtcaaaaatgacaggggaggaatgccaaggactcttc
gtgaagcatatggaggattccctacaagatacagtgttggcaaagagagaatggatcaac
agtgacttcaactttgacagtgtgctcagtggcatgctggctctcttcactgtttccaca
ttcgaaggctggccaaaactgttatacagagccattgattcagacgaagaagacaagggt
cctgtcttcaacaatcgcgtagatgtgtccatcttcttcatcatctacatcatcctcatt
gccttcttcatgatgaacatctttgtgggcttcgtcatcgtcacttaccagaaggagggt
gcacaggagtacaaagactgcgagctggacaaaaaccagcgccaatgtgtgcagtacgcc
ctgaaggctcgacccctgaggtgctacatccccaaaaacccataccagtacaaagtctgg
tacattgtcacttcctgctactttgaatacctcatgttcttcctaattatgctcaacacc
ttgtgtctggggatgcagcactgtaaccagtccgaccatgtgaccaagctgtcagacact
ctgaacgtgatcttcaccgtgcttttcactgtggagatgattctcaagctcatggccttc
aaagcgaggggctacttcggagacccctggaacgtctttgacttcgtcatcgtcatcggt
agtgtcgttgatgtcatccttagcgaagtcgatagcgccctggctgccagtggaggactg
tactgtctccatggctgtgctgatacaaatcctctgcaagcaattgcggcgtctgaaaat
gcctcggtctccatcacgttcttccgactcttccgtgtgatgcgtctggtcaagctgttg
aaccgttcggagggcatccgtaacctgctgtggaccttcattaaatccttccaggctctt
cctcatgtagcgttgctcatcatcatgctcttctttatctacgctgtcgttgggatgcag
atctttggaaaggtagccttagtggacggcacgcaggtcaaccgcaacaacaacttccag
acattccctcaggcggttctaatgttattccggtgtgctactggagaggcttggcaggag
gtcatgatggcctcaatgtatgggaagaagtgcgacgccatgtctgacttcctgccaggt
gaggagttcacctgcgggtccaacttcgcagtcttctacttcctcaccttctactgtctc
tgcgccttcctgatcctcaacctgtttgtagccgtcatcatggacaacttcgactacctc
acccgtgattggtctcttcttggtccacaccatctggatgagtttaagaagacctgggct
gaatatgaccctgaagccacggggagaatccagcatctggatgtgttgacgttgctgcga
agcctgcagcctccactcggctttggcaagttctgtcctcaccgtgatgcgtgcaagcgc
ctgatcggcatgaacatgcctctcaacagtgacggcaccgtcaccttcaacgccaccctg
tttgctctcgtcaggacggcactcaagatcaaaacagaaggtaactttgagcaagccaac
gaggagctgagagccattattaaatccatctggaaacgcaccagcatgaaactgttggac
caggtcatcccacctattggagatgacgaggtgactgtggggaaattctactccaccttc
ctgattcaggaacatttccgcaagtttttgaagcgccaggaggagtactatggctaccgg
ccctcgaagaagaatgcctcaggcccagagatccaggcgggcctgaggagttcagacgac
gaggttgctccggagatgcaccgggccatttctggagacctgctgaatgaggaggagatt
gacaaagctatggaggaggctggagaagaaggcatctaccatcgtacacacgacctgttt
ggtaatcgggtggactccttctctactgagcccgtcaacactcaggcccagcagatgacc
aaccagcggcccctcaagttctccgagagccagccggagtctccaccaaactctgctgcc
atggtgcccgccacagaatttttccccacaatcgaaccaaaaagcaacactaacaacaac
gccttcgcagaatattcatttgatcgagaaggaagtcgcgaagacttttacaacctcagt
gacgatttggagcgagttcactcctggaacttcacggtgaaaacaggcaaaacgcagctc
ctgtatgacccgaactatggtgacagtcagcgtactgcagcggaccagctggtccaggag
gctctcgtcgagggcggcctggcctccctggccaaagaccccggctttgtctctgtgact
aaggaggagatggccgacgccatgcacacgactgtcaatgagatggagagcgtggctcgg
ggcatcctcagcgaacgtgctggcagcgtcacctccatcaaaaagaggcatcccgtccct
cctgccgcggcggcgggccaaccagatccagctgtgcggagaaagagacgtccaatccag
ctgattccctccgtgcaggagggagactccaaagtttag
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