Pseudoliparis swirei (Mariana hadal snailfish): 130199287
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Entry
130199287 CDS
T09868
Name
(RefSeq) cadherin-4-like
KO
K06797
cadherin 4, type 1, R-cadherin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
130199287
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130199287
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Major cadherins
130199287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_CELSR2_9th
Stevor
DUF5527
Motif
Other DBs
NCBI-GeneID:
130199287
NCBI-ProteinID:
XP_056278621
LinkDB
All DBs
Position
9:23419514..23664029
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AA seq
937 aa
AA seq
DB search
MRTDFAVVLTAALLLDSFWRNNGEHASEGPCRPGFSQSFYSVLISRDVLQGRDIRKDTTL
SSQKVEFDDCVGNEAVVFQSSDPDFSVRTDGSIFARGEGAGLDEPVQFKLTASGQHAHVW
ETVVQLALIDPPSRLQNGNEVTEEEGKAAERKERKEASRAPPPPPPPVIMFSGSGRNSSK
GLRRQKRDWVIPPINVAENSRGPFPQMLVSIRSDQDKDISIRYSITGVGADQPPNEVFNI
DPVVGKMFVTKPLDREHRSSYHLRAHAVDMNGNQVENPIDLFIFVIDMNDNRPEFRNQVY
NGSVDEGSKPGTYVMHVSAFDGDDNTTANGMVRYRILSQTPHTPIPNMFTINSETGDIVT
VAPGLDREKVSQYTIIVQATDMEGNLNFGLSNTATAIITVTDINDNPPMLTSRTFSGEVP
ENRVDLAVANLTVIDADQPHSPNWNAIYRIISGDPSGHFTIRTDPVTNDGMVTVVKPVDF
EMNRAFMLTVVVSNQAHLASGIQSALQSTAGVTISVQDVNEAPYFPTNPKHIRFEEGVPA
GTSLTTFSASDPDRLQMQQTIRYSKMNDPADWLSINRTNGQIVTTAMLDRESSYVKNNIY
EATFLATDNGSPAASGTGTLQIYLIDINDNPPALIPKESQICERVNRNVHGVNITAADAD
TEPNAGPFVFELPNFPSSIRRNWTISRISGDYARLGLRYQIYLEPGVYEVPVIVSDSGNP
PLSNRSVIKIKVCPCDEHGDCTTFGAVAAAGLGTGAIISILICIIILLSMVLLFVVWIKR
REKERHNKQLLIDPEDDVRDNILKYDEEGGGEEDQDYDLSQLQQPDSLEHISSKPPGVRR
VDERPVIPESQYPIRPVVPHPGDIGDFIHEGLRAADNDPTAPPYDSLLVFDYEGSGSTAG
SVSSLNSSSTGDQDYDYLNDWGPRFKKLADMYGGGDD
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgagaaccgacttcgctgtggtcctgaccgcagccctccttctggactcattctggagg
aataatggcgagcatgcatccgaaggtccctgccgaccgggcttctcacaaagcttctac
tctgtgctgatatcaagggatgtactgcaaggccgggacatccgcaaagataccacattg
tcctcacaaaaagtggagttcgacgactgcgtggggaatgaagccgtggttttccagagc
agtgacccggacttcagcgtgcggacagatgggtccatctttgcccggggagagggggcc
ggcctggacgagccggtccagtttaaactgacggcgagcggtcaacacgcgcacgtctgg
gagaccgtggtccaactggccctaattgacccgccatcgcgtctgcaaaatggaaatgag
gtcacagaggaagaggggaaggccgcggagaggaaggagaggaaagaggcgtcccgagca
ccgccgccgccgccgccgcctgtcatcatgttctcggggtccggccgcaacagctccaag
ggtctgcggaggcagaagagggactgggtgattccaccaatcaacgtggccgaaaactcc
cgaggaccgttcccccagatgctcgtcagcattcgctccgaccaggacaaggacatctcg
atcagatacagcatcaccggggtgggagcggatcaaccgcccaacgaggtgttcaacatc
gaccccgtggtcgggaagatgttcgtcaccaaacctctcgatcgagaacatcgctcttct
taccatctgcgagcccacgccgtggacatgaacgggaaccaggtggagaaccccatcgac
ctcttcatcttcgtcatcgacatgaacgacaacagacccgagttcagaaaccaggtctac
aacggctccgtggacgaaggctccaaaccaggaacgtacgtgatgcacgtgtcggcgttc
gacggcgacgacaacaccacggccaacgggatggtgcgctatcgaatcctgtcccagacg
ccgcacacgcccatccccaacatgttcaccatcaacagcgagacgggggacatcgtcacc
gtggcgcccggcctcgatcgagagaaagtgtcccagtacaccatcatcgtgcaggccacg
gacatggagggcaacctgaacttcggcctttccaacacggccaccgccatcatcactgtc
acggacatcaacgacaaccctcccatgctgacctccagaaccttttccggcgaggtgcca
gagaaccgggtggatctggcggtggcgaatctcacggtgatagatgccgaccagccgcac
tcgcccaactggaacgccatctacaggatcatcagcggggacccgtcgggccacttcacc
atccgcaccgacccggtaaccaacgacggcatggtcaccgtggtgaagccagtggacttt
gagatgaaccgtgccttcatgctgacggtggtggtgtccaaccaggcccacctggccagt
gggatccagtcggcgctccagtccacggccggggtcaccatatccgtccaggacgtcaac
gaagccccctacttccccaccaaccccaaacacatccgcttcgaggagggcgtcccggcc
ggcaccagcctgaccactttctccgcttccgatcccgaccgactacagatgcagcaaaca
atcaggtattcaaagatgaacgaccccgcggactggctgtccatcaacagaaccaacggt
cagatcgttaccacggcgatgctcgaccgggagtccagctacgtgaaaaacaacatctac
gaggccacgttcctggccacggacaacggctccccggcagccagcggcaccggcacgctg
cagatctacctgatcgacatcaacgacaacccgccggcgctcatccccaaggagtctcag
atctgcgagcgggtgaacaggaacgtccacggcgtcaacatcaccgccgccgacgccgac
accgagcccaacgccggcccgttcgtcttcgagctgcccaacttccccagcagcatccgg
cgcaactggaccatttcccggatcagcggcgactacgctcgcctcgggctgcggtaccag
atctatctggagcccggcgtctacgaggtgcccgtcatcgtgtcggactcggggaacccg
ccgctgtccaaccggtcagtcatcaagatcaaggtgtgcccctgcgacgagcacggggac
tgcaccaccttcggggccgtggcagccgccggcctgggcaccggagccatcatctccatc
ctcatctgcatcatcatcctcctcagcatggtgctgctgttcgtggtgtggatcaagcgg
cgtgagaaggagaggcacaacaagcagctgctcattgacccggaagacgacgtcagagac
aacatcctcaaatacgacgaagagggaggaggagaggaagaccaggactacgacctgagc
cagctgcagcagcccgactccctggagcacatcagcagcaagccgcccggcgtgcgccgg
gtggacgaacggcccgtcatcccggagtcccagtaccccatcaggcccgtcgtgccccac
cctggagacatcggggacttcatccacgagggtctgcgagcggcggacaacgaccccacg
gccccgccctacgactcgctgctggtgttcgactacgagggcagcggctccaccgccggc
tccgtcagctccctcaactcgtccagcacgggggaccaggactatgactacctcaacgac
tggggcccccgcttcaagaagctggccgacatgtacggaggaggggatgattag
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