Pseudoliparis swirei (Mariana hadal snailfish): 130199394
Help
Entry
130199394 CDS
T09868
Symbol
prdm2a
Name
(RefSeq) PR domain zinc finger protein 2
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi00310
Lysine degradation
pswi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
130199394 (prdm2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130199394 (prdm2a)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130199394 (prdm2a)
Enzymes [BR:
pswi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
130199394 (prdm2a)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
130199394 (prdm2a)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
130199394 (prdm2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-C2H2_4
zf-C2H2_11
zf-C2HE
zf-C2H2_6
Upf2
zf-C2H2_ZNF462_1st
Zn_Ribbon_YjdM
Motif
Other DBs
NCBI-GeneID:
130199394
NCBI-ProteinID:
XP_056278832
LinkDB
All DBs
Position
9:complement(10296735..10306064)
Genome browser
AA seq
1368 aa
AA seq
DB search
MEDSPHLDISDNEDMEEGGEEEEDDEDDDVYQGETDMQPDTMTSLFPDLHEPPNQDTERD
WNSSPCQHCERHFTSKQGLERHMHIHALEKNQAHACSHQSSTSFGSTPGRPQQEKRKPLD
SVGSVMQRHTSSSAGSHASTASDGDRNAQPDKSGVPEGRHACKYCEKIFTTHTNKRRHEL
RIHEQNRQVAGVEKTQLAQETDVQRMPGEASQEETEIADNTAAVLENHVECAEQYMLDVS
SNISENLSFYIDGMIVSTSTVGSCEAPEIYSGSSASVGLDALILDPAQISQVLNTDSVAG
KEIPGQPQVKRRTATPPLLPQIKTELESEVGVSSSSSSLVSSFIENLLPPNTESTGVQKE
RTVFLSPKLKQLLENQDGLTPTLALIAEAQKPCSPVSLSVRAAGTGRFKRRTGSPPSSPQ
ENPTSIDETADSGDCDSVGAGQAESQHGSPVPQTADVKDDSTPHVEEPAVTPVPTESWTP
TAGGNSCNQQPLDLSNAVRRNEDFALSDSVLDLSFQKKIPGQPEPTVDLVSQAVFKAAKS
NACMAETALIIIGEQNVSLGNPEIPLVTDFTILTGPDVMTPMEPVAEGLVYGLALPSNSL
IASPASFPPVSLQPASPCTLECACPASHTVLPAAAASFITLLTPPTISNPASQPIPLLAP
TLSSEPLVICTDGAVRFSECEFTTAFAPTDSANHAGLSQSLDPTLNLPAHVFLSDQIAIS
RPIVESIPMSEVQFTPTVSLSDSLINSFNMSSHTVLIECTIALEAPASIVPSPDDAAEPP
APTQMVVGHMERIVSVPNSQTVDATILMSSIAESVSLSTLVMSDRPAVGQSSPDPQLVVD
ADSPLVKEEAAASSTVSIAESSFKASPLSEKAEEDGVSSGAQPQTFTKNFICNVCDRLFH
SMKELGHHVGDHADGWPYKCEFCVLLFGRPSALLDHRSSLHGVGKSYVCSACTKEFVYLC
NLKQHQDELHPGLQCSYSEEEKGKLRPQNYNSSVTVKAEASLPDAAEEPTKLVKKEVDVA
AEELFTTMKILASNGANVKGPDVRLGINQHYPSFKPPPFPYHNRSPAGSVASATNFTTHN
IPQTFTTAIRCTKCGKSFDNMPELHKHILACANASDKRRYTPKRNPIPLRHFAKAQNGVL
STTNTTNRLNASNRPSQSNRSKPSQESPVKVKFKVLSKRKKKLAPRVMPPRNKSPSNKMS
PAHVAAQQEVFVCPHCSREFTMRRSRTKHMAVCPKKPKEVKKRKEGGISVTKENDGRLHR
RAEEKQQASPQHQTRLQSSGPAKRHAILPVQTVFSSKRSKIIIKESSQPREEAATLNELP
MGRTFNPSMRQYSRAQHSLKGIPVGKPRAAAPQTEPEPASNSGQSPTA
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggaggactctcctcacttggacatctctgacaatgaagatatggaggaaggtggggag
gaggaggaggatgacgaagacgacgacgtttatcaaggggaaactgacatgcagccagac
acgatgacgtcactgttccctgatctacatgaacctcccaaccaggatactgagagagac
tggaactcttctccctgccagcactgcgagagacattttaccagcaaacaaggcttagag
cgacacatgcacatccatgcgttggagaagaaccaggcgcacgcatgcagccatcagagc
agcacgtctttcgggtcaactccgggtcggccgcagcaggagaagaggaaacctctggat
tcagtcggctcagtcatgcagcgtcatacatcctcctccgcgggctcgcatgcttccact
gcgtcggacggtgaccgcaatgctcagccagacaaatcgggagtaccggaggggcgtcac
gcttgcaagtactgcgaaaagatattcacgacacataccaacaagcgacgacatgagctc
aggatccacgagcagaaccggcaagtcgcaggtgtggaaaaaacccagctggcccaagag
acggatgttcagaggatgcccggtgaagcttctcaagaggaaaccgagatcgctgacaat
actgcagctgttctggagaatcacgtggaatgcgccgaacaatacatgctggatgtctcc
agcaatatttcagagaatctcagcttttatatcgatggaatgatcgtgtcaacaagtacg
gtcggtagctgtgaagcgcccgagatttattctggttcttcggcttcagttggactggat
gccctgattctagaccccgcccaaatcagccaggttttaaatacagattcagttgcaggc
aaagagatacccggtcaaccacaggtcaagagaagaactgcaacgccacctcttttacca
caaattaagactgagctggagtctgaggtgggtgtgtcttcttcatcatcctcacttgta
tcttctttcatcgagaatctacttcctcccaacaccgagtccacaggtgtgcagaaggaa
agaactgtgttcctgtctccgaagctgaagcagctcctggagaatcaggacggactcacg
ccgacacttgccctcatcgcagaggcccagaagccttgctcgcccgtctctctttcggtc
cgggcggccggaacaggccggttcaaaaggaggacggggtccccgccgagctccccacag
gaaaacccgacatccatagacgaaacggcagatagtggagattgtgatagtgtgggtgca
gggcaggcggagagccagcatggctcaccggtgccccaaacagccgatgtgaaggacgac
tcaactccacatgtggaagagccagcagtgacgcccgtccccacagagagctggaccccc
accgccggcggtaattcctgtaaccagcagccactggatctctcgaatgcagtcagaaga
aatgaagatttcgctttgagtgactcggtcctggatttgagcttccaaaagaagatccca
ggtcaacctgaaccgacggtggatttagtgtcacaggcagttttcaaagcagctaaatcc
aatgcatgcatggcggagacggctctaataatcatcggagagcagaatgtaagcctcggg
aatcctgagatccctttagtcacggacttcacaatactgacgggaccagatgtgatgacc
ccgatggagcccgtggcagagggacttgtttacggcctcgcacttccctccaactctttg
attgcatcacccgcatccttcccccccgtttccttgcagccagcttcaccgtgcactctg
gaatgtgcttgcccagcctcacacacggtgctccctgctgctgctgcttcattcataaca
cttttgacgccaccaactatttccaaccccgcaagccaaccaatcccgttgcttgccccg
actctatcgtccgagcccctggtgatctgcacagacggcgcggtacgcttctccgagtgc
gagttcacgactgcatttgctcccacagattctgcgaaccatgccggtctctcccaatcc
cttgacccgactctaaacctacctgctcatgtgtttctctctgatcaaatagctatcagt
cgcccgatagtcgagtccattcccatgtcagaagtgcaattcacgcccactgtcagttta
agtgactccctgatcaactctttcaacatgagcagccacacggtgctcatcgagtgcacc
atcgctctcgaagccccagcgagtatcgtcccctcaccggacgacgccgctgagccgcca
gcgccgacacagatggttgtcggccacatggaacggattgtatcggtgcccaactcccaa
acggtggacgccactattctcatgtcctctattgcagaatcagtaagtctgtccaccctc
gtgatgtccgatcgtcctgccgtggggcagtcaagtcccgacccacagctggttgtcgat
gcagattcaccactcgtcaaagaggaagcggctgcttccagcacggtttccatcgcggaa
agctcatttaaagcctccccgctttctgagaaagccgaagaggacggagtctcaagcggc
gcgcagccgcagaccttcaccaagaacttcatctgcaatgtgtgcgaccggctgttccat
tcgatgaaggagctgggccatcacgtgggcgaccatgccgacggatggccctacaagtgt
gagttctgcgtgctgctcttcggcagaccctcggcgctgctcgaccatcggtcgagcctc
cacggcgtcggcaagagttacgtttgcagcgcgtgtacaaaggagttcgtctatctttgt
aatctgaagcagcatcaggacgaactgcatcctggcctgcagtgttcctacagcgaggaa
gaaaagggaaaactaagacctcagaactacaacagctcggtgacggtcaaagcggaggcc
tcgctgccggacgctgcagaggagcccacgaagctggtgaaaaaggaagtggatgtggcc
gcggaagaactgtttaccacgatgaaaatcctggcctccaacggagccaacgtcaagggg
ccggatgtgcgtcttggcatcaaccagcactaccccagctttaagccgccgccctttcct
taccataaccgatcccccgccggctccgtggcttctgccacgaacttcaccacccacaac
atcccgcagaccttcaccacggccatccgatgcaccaagtgtggaaagagctttgacaac
atgccggagttgcacaagcatatcctggcgtgtgccaacgccagcgacaagaggagatac
acgcccaaaaggaatcccatcccgctgcgccactttgccaaagctcagaatggggtcctg
tcgaccacgaacacgacgaacagactgaacgcctccaacaggcccagtcagtcgaaccgc
tccaagccgagccaggaatcgccagtgaaagtgaagttcaaggtcctgagcaaaaggaag
aagaagttggccccgagggtgatgccgccgaggaacaaatctccatcgaataaaatgtcc
ccggcgcacgttgctgcgcagcaggaggtctttgtctgcccgcactgcagccgggagttc
accatgcgccgcagcaggaccaagcacatggcggtctgccccaagaaacccaaggaggtg
aagaaaaggaaagaaggagggatctccgtgacgaaggagaacgacggccgcctgcatcga
agggcggaggagaagcaacaagcgtcccctcagcatcaaaccagactgcagagctccggg
cccgccaagaggcacgccatcctgccagtgcagaccgtcttctccagcaagaggagtaaa
ataatcatcaaagagagctcgcagcccagagaggaggcggccacgctgaacgaactcccc
atgggtcgcacgttcaacccctccatgcgccagtacagcagagcgcagcacagcctcaaa
ggaatccccgtcggcaaaccccgagcggccgctccgcagacggagccggagccggcgagc
aactctgggcagagtccgaccgcctga
DBGET
integrated database retrieval system
