Pseudoliparis swirei (Mariana hadal snailfish): 130199460
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Entry
130199460 CDS
T09868
Symbol
exosc10
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130199460 (exosc10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130199460 (exosc10)
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
130199460 (exosc10)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
130199460
NCBI-ProteinID:
XP_056278938
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All DBs
Position
9:11053361..11067385
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AA seq
896 aa
AA seq
DB search
MMDSSKSNDSTNSGLRDATSQNNDEEQDELCPGFRNADAFVKYGFGAVVSATKASAGLPQ
TGAEDDFYRSFPGFREFCESQGDKLLQCMSQIMQHHGCRSHLRDRNKLTQLEERFDLVVD
SNDVILERVGILLDEADGVNRTQQPVLPAGFQPPKIVVSSWNRMGSGSKSRSETFRLLHA
KNVARPQLKFKEKVDNSNTPFIPKIFIKPNAKKALSSYFTNKLIRKQRPEDLDVPAALAD
LIHQQRTQEHVEDMFAHPYQYELDHFTVPEDLLSKREPQMYKPITETKCSFIDSLEDLVA
LNEKLCKVSEFAVDLEHHSYRSFLGLTCLMQISTREEDFIIDPIELRSELYILNEAFTDP
AIVKVFHGADSDIEWLQRDLGLYVVNLFDTHQASRALNLARHSLDHLLKHFCTVDTDKRY
QLADWRIRPLPEEMLQYARTDTHYLPYIYDCVRAQLLDFNHGQPGLLQSVWNKSRDISLK
KYVKPIFTEESYLELQRKQKRSLNTQQLTAFRLLFAWRDKLARQEDESTGFTLPTHMMNK
ISEELPREPQGIIACCNPVPPLVRQQVNELHLLVQQAREMPLLKAEFVVPVTKGLTTIKK
PEVTMFGPHDTSRVSESDLHQCSRDEMPVKPGMLFSEEEEEMDVSVKNTSGLVATAKITL
FEELETQTDPDSPSVAQMKARRIVESFENPFRMYLPSSHVHISKNAKFDPSSKIFEISNK
WKLQSIEQQQKELEAKKEAKKKSKEEAKEHSKKVTEERKQATQSYQESLQNVATVRQQAA
EFAKGDGKKRERVDGEIGELTPKPSKKLLKSAEKPEKKEPPPQDDFNPFDYSQSNLKVFA
GTKPKDNTQFDPNRQAGFKRKKNAKGQKSSSGPGNRSMSYIAGKSESGFRQNWPKR
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgatggattcatcgaagagtaatgactccacgaacagtggccttcgagacgcaacatca
caaaacaacgacgaggaacaagacgagctatgtcccggttttagaaacgcggatgctttt
gtgaaatatggatttggggccgtagtatctgccaccaaagcatccgccggcttgcctcag
actggagccgaggatgatttctatcggagtttcccgggattccgggagttctgtgaaagt
caaggtgacaagctcttgcaatgcatgagtcagataatgcagcaccacggctgcagatct
cacttgagagaccggaacaagctgacgcagctcgaggagcggtttgacctggttgtggac
tcgaatgacgtcattctggaaagagtggggattcttcttgatgaagctgatggggtgaac
aggacccagcagcctgtcctgcctgcaggatttcagcctcccaagattgtagtttccagc
tggaatcgcatgggttcaggctccaaaagtcgttctgagacgttccgccttctccacgcg
aagaatgttgcgaggcctcagctgaaattcaaggaaaaagttgacaacagcaacacacca
tttattcccaagatcttcatcaagcccaatgcaaaaaaggctctttcttcttatttcacc
aacaaactaattcgtaaacagagacctgaggaccttgatgtcccagctgccctggctgac
ttaattcatcaacagaggactcaggaacacgttgaagacatgtttgcacacccataccaa
tatgagctggatcatttcacagtaccagaagaccttctgtctaagcgagaaccgcagatg
tacaagccaataacggagaccaagtgctccttcattgactcactggaggacctggtggct
ctgaatgagaagctttgcaaagtgtctgaatttgcagtggaccttgagcaccactcctac
aggagtttcctcggcctcacctgcctgatgcagatctcgaccagagaggaggacttcatc
atcgaccccattgagctccgcagcgagttgtacatcctcaacgaggcatttactgacccg
gcaattgtcaaggtatttcacggcgctgactccgacattgaatggctgcagagggacttg
ggcttgtacgtcgtgaacctttttgacacgcatcaggccagcagagctctgaatctggcc
agacattccctcgaccacctgctcaaacacttctgcactgtggacacagacaaacgctac
cagctggctgactggagaattcgccccttgccagaggagatgctgcagtatgcccggaca
gacacccactaccttccctacatctacgactgtgtgagggcgcagctgctggacttcaac
cacgggcagccaggtctgctgcagagcgtctggaacaagagcagagacatttctctgaag
aaatatgtgaagcccatattcacagaggagtcctatttggagctgcagaggaagcagaag
cggtctttaaacacccagcagctcactgccttcagactgctgtttgcttggagggacaag
ctggccaggcaggaagatgaaagcaccggattcaccctgccaactcacatgatgaacaag
atatctgaagagctcccaagggagcctcagggcatcattgcctgctgtaaccctgtacct
ccactggtgaggcagcaagtcaatgagctgcatctgttagtgcagcaggccagagaaatg
cctctcctcaaggcggaatttgtagttccagtgacaaaaggactcacaactataaaaaag
ccagaggtcacaatgtttggtcctcatgatacatccagggtctctgagagcgatcttcac
cagtgttcccgtgatgaaatgcctgtcaaaccagggatgctcttctcagaggaagaggaa
gagatggatgtcagtgtcaagaataccagtggtctcgtggcaacagctaaaatcacactg
tttgaggagctggaaacacagactgacccagactccccctctgtggctcaaatgaaagcc
agacgtatcgttgagtcttttgaaaaccctttcagaatgtacttgccctccagtcatgtg
cacatcagcaagaatgccaagtttgacccgtcttcgaaaatatttgagattagtaacaaa
tggaaactgcagagtattgaacagcagcagaaggagttggaggccaagaaagaggccaag
aagaaatccaaggaagaagcaaaggaacattcaaagaaagtgacagaggaaaggaagcag
gccacgcagagctaccaggagtctctccagaacgttgccactgttcgccagcaagcagcg
gaatttgcaaaaggcgacggaaagaaacgtgagagggttgacggtgagattggagagtta
actcccaaaccgagtaagaagctgctgaaatctgcagagaagcccgagaagaaggaaccg
cccccccaagacgacttcaatcccttcgactacagtcagtcgaacctcaaagtctttgct
ggtacgaaaccaaaggacaacacacagtttgatccaaatcggcaagcaggttttaagaga
aagaaaaatgccaaaggacaaaaatccagttctggacctggaaaccgaagtatgtcgtac
atagctggaaaatccgagagcggattccggcagaactggcccaaaagataa
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