Pseudoliparis swirei (Mariana hadal snailfish): 130199469
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Entry
130199469 CDS
T09868
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130199469 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pswi03041
]
130199469 (prpf40a)
Spliceosome [BR:
pswi03041
]
Complex A
U1 snRNP components
U1 related factors
130199469 (prpf40a)
Complex B
130199469 (prpf40a)
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Paralog
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Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
CEP164_N
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
130199469
NCBI-ProteinID:
XP_056278960
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All DBs
Position
2:11624012..11635964
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AA seq
852 aa
AA seq
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MMGPPGIPPHYSPIGMPPMGQRPPSMTPMPPGIIPPGVMPPMGAPPMGQMPGMMPPMMPG
MMMPPHMPAAAVQPTGPPGVDSIAAAPETAIDTNGSPQDEQPKKKSLWTEHKSLDGKTYF
YNTETKQSTWEKPEDLKSPAEQMLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKDLEDL
EAMIKAEENGTAEAMAPGTTAAPAMQADNTASMVTVMEAETAMAVPEEHLSQVALHHTDE
VKTADAPVASSESSAVTEATASIEVTKEERPELQKKTYKWNTKEEAKQAFKELLKEKGVS
SNSSWEQAMKMIINDPRYSALPKLSEKKQAFNAYKVQTEKEEKEETRIKYKESKETFQRF
LENHEKMTSTTRYKKAEQMFNEHEVWSCVPERDRLEIYEDVLFYLAKKEKEQAKQLRKRN
WEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQNMDKEDALICFEEHIRALEK
EEEEEKQKTLLRERRRQRKNREAFQKFLDELHDHGQLHSMSAWMEMYPTLSSDIRFANML
GQSGSTPLDLFKFYVEDLKARYHDEKRIIKDILKDKGFLVEVNTSYDDFGSVISSDKRAT
TLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKEAAFKNMLKLATPTLEPETAWEGI
RDRFLKESAFEDVTLESERKRIFKEFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRS
GSESEDDEYHKKKKRSQSKSPSERSSSGESERSYKKSKKHKKKGKKRRHKSASPDTDNEK
KGRERDGKREKDLEKDKENDKSRAKPRSDPKQKSPKRKPAKEEGGWDTSGSELSEGELEK
RRRTLLEQLDAP
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgatgggcccaccaggaataccgcctcattactctcccattggaatgcccccgatggga
cagagaccgcccagcatgactccgatgcctcctggtataattccccctggtgtaatgcca
ccaatgggtgcaccgccaatgggacagatgccaggcatgatgccacctatgatgccaggg
atgatgatgcctcctcacatgccagctgcggctgtacaaccaacaggaccgcctggtgtt
gactccattgcagctgcgcctgaaacagctattgacacaaatggatctccacaggacgaa
caaccaaagaagaagtccctgtggacagaacacaaatcattggatgggaagacctatttt
tacaatacagagaccaagcagtccacatgggagaaaccagaggatctcaaatctcctgca
gagcaaatgctgtccaaatgcccttggaaggagtacaagtcagacacagggaagccttat
tattacaactctcagacgaaggagtccagatggacgaaacccaaagatctggaggatctg
gaagcaatgatcaaagcagaggagaatgggacggcggaggcgatggctcctggcactaca
gcagctcctgcaatgcaagcagataatacagcctctatggtaaccgttatggaggcggaa
actgcaatggcagtcccagaggaacacctgtctcaggtggctctgcatcacacagacgag
gtcaagactgcggatgcacctgtggcttcctcagagagctcagccgtcacagaggccaca
gccagtattgaagtcacaaaagaagagcggccagaacttcagaagaaaacatacaaatgg
aacacaaaagaggaagccaagcaggccttcaaagagctgctgaaggagaagggtgtgtcc
tcaaactcttcctgggaacaggctatgaaaatgattatcaatgatcctcgctacagtgcc
cttcccaaactgagtgagaagaaacaggcgttcaatgcctacaaagtccaaacggagaag
gaagaaaaagaggagaccagaatcaaatacaaggagtccaaagagacctttcagaggttc
ctggagaaccacgagaagatgacttctaccacgagatacaagaaagcagaacagatgttt
aatgagcatgaggtgtggagctgtgtgccagagcgggacaggctggagatctatgaagat
gttttgttctacctcgcgaagaaagagaaggagcaagccaagcagctgaggaagaggaac
tgggaagctctgaagaacattttggacaacatggccaacgtcacgtaccgcaccacctgg
tctgaggcccagcagtacctgctggacaacccgacctttgcagaggatgaggagctgcaa
aatatggacaaagaggatgccctcatttgttttgaagagcacatccgagctctggagaag
gaggaagaggaggagaaacagaagactcttctcagagagaggagacggcagcgcaagaac
agagaggccttccagaaatttctggacgagctccacgaccacggtcagcttcactccatg
tcggcctggatggagatgtacccgaccctgagctcagacatccgcttcgccaacatgctg
ggccagtcgggatccactcccttggatctgttcaagttctatgtagaagacctgaaggcc
cgctaccacgatgagaagaggatcatcaaagatattctcaaggacaaaggctttctggtg
gaggtcaacactagctatgatgactttggatccgtcatcagctcggacaagagagccacc
acactggacgcaggaaacattaagctggcattcaacagcctactggagaaggccgaagcc
agagagagagagcgagagaaggaggaggccaggaaaatgaaaaggaaagaagcggccttt
aaaaacatgctgaagctggccacgcccacactggagccagagactgcatgggaggggatc
agagatcggttcttaaaagaatctgcctttgaagacgtgactctggagtcggagaggaag
aggatattcaaagaattcatgcatgtcttggagcatgaatgccaacaccaccactccaag
acaaagaagcactcgaagaagtccaagaagcaccacaggaagcggtcccgctctcgatcg
ggctccgagtccgaggacgacgaataccacaagaagaaaaagaggtcgcaatccaaatct
ccctctgagcgctcatccagcggagaatctgagagaagctataaaaaatccaagaagcac
aagaagaagggcaagaagagacgccacaagtctgcatcgccagacaccgacaatgagaag
aaaggaagagagcgcgatggaaagcgtgaaaaggacttagagaaagataaagagaacgac
aagtctcgggccaaacctcgctccgacccgaaacagaagtctcctaaaagaaaacctgca
aaagaggagggcggctgggatacatcaggcagtgagctgagtgaaggagagctggagaag
aggagaagaactttactggaacagctggatgcaccttga
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