Pseudoliparis swirei (Mariana hadal snailfish): 130199476
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Entry
130199476 CDS
T09868
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130199476 (clstn1)
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Cadherin related
130199476 (clstn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
CDC45
FAM176
Laminin_G_2
Cadherin_C_2
V_ATPase_I
EphA2_TM
PFF1_TM
TMEM132_C
Motif
Other DBs
NCBI-GeneID:
130199476
NCBI-ProteinID:
XP_056278974
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All DBs
Position
9:complement(11522098..11562370)
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AA seq
982 aa
AA seq
DB search
MRFLGNTRSASAAVGLVLGLLCAVEAAKVNKHKPWIETTYHGIVTENDDKVLLDPPLIAL
DKDAPLRYAESFEVTLTEEGEICGFRIHGQNVPFEAVVLDKSTGEGVIRAKDKLDCELQK
EHTFTIQAYDCGEGPDGANMKKSHKATVHIQVNDINEYSPVFKEKSYKATVIEGKKYDSI
LKVEAVDADCSFQFSQICNYEIVTPDVPFTVDKDGFVKNTEKLNYGKERMYKLTVTAYDC
GKNRASEDVLVKISVKPTCKPSWQGFNKRIEYEPGTGSLALFPSMHLETCDEPITSLRAT
IDLETNHIGKGCDRDTYSEKSLHKLCGASSGTVELLPAPSSSANWTVGLPTDNGHDSDQV
FEFNGTQAIKVPDGLVSTSLKEPFTLSVWMRHGPGAREKETILCNSDKTEMNRHHYSLYV
HNCRLILLLRQDPSEAENYKPAEFHWKLDQACDKEWHHYVLNVEFPTVSLFVDGTTFEPF
LVTEDYPLHSTKIESQLTIGACWQDNSGHDNDTESVSEPTSGGNAKMAQFFRGNLAGLMI
RSGKLENKKVIDCLYTCKEGLDVQLPEEVASAVKVEFNPNQSSLTVEGDDIDAFDKVMQH
ISYLNSRQFPTPGIRHLRISTTVKCFNEDSCVTVPDAEGYVMVLQPEEPKISLSGIDHFA
RSAAEFESQEGVTLFPELRIVSTITREVEADTEYEATEGADDDPTVQETVVSEEIVHNLD
TCEVSVVGDELDGEHEGLEVDMAQLQQHGLEMSSSNLGLVVTGVNTMANYEQVLHLIRYK
NWHTEALFDRKFKLVCSELNRRFISNDFKVEVNVIHTANPVEHANNAMVQPNFINPVHHA
SVDLTGHNLVNAHQASVIPSAATIVIVVCVSFLVFMIILGVFRIRAAHQHTAGDQENGKE
NEMDWDDSALTITVNPMETYEDQHSSEEEEEEEEESEDGEEEDDITSAESESSEDEESAE
PEDQQGVSRQQQLEWDDSTLTY
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgcggttcctggggaatacacgatctgcatccgctgctgtcggactggtcctcggacta
ttatgtgcggtggaggcagcgaaagtcaataagcacaaaccatggatcgagacgacgtac
cacgggatcgttacggaaaacgatgacaaagtacttctggaccctcctctaattgcactg
gacaaggatgctcctctacgctacgcagagagttttgaggtgaccctcaccgaagaaggt
gagatttgcggcttcaggatccacgggcagaatgtcccgttcgaggcggtggtcctcgac
aagtccactggcgagggggtcatccgagccaaggacaagctggactgcgagctgcagaag
gagcacaccttcaccatccaagcctacgactgtggagagggtcccgatggagccaacatg
aagaaatcccacaaggccacggtccacatccaggtaaacgacatcaatgagtattcccca
gtgttcaaggagaagtcctacaaagccaccgttatcgagggaaagaagtatgacagcatc
ctgaaggtggaggcagtggatgctgactgctccttccagttcagccaaatctgcaactac
gagatcgtcactcccgatgtgcccttcaccgtggacaaagatggcttcgtcaagaacaca
gagaaactgaactacggcaaagagcgcatgtacaagctgaccgtgacggcctacgactgt
ggaaagaaccgtgcctccgaggacgttctggtcaagataagcgtcaagcccacctgcaaa
cccagctggcaaggcttcaataagaggattgaatacgagcctggcacaggtagcctcgct
cttttccccagcatgcacttggagacctgtgatgagccaatcacgtctctccgcgccacc
attgacctggaaaccaaccatattggcaagggctgcgaccgtgacacctactctgagaag
tctctgcacaagctgtgtggagccagctccggcaccgtggagcttctgccggcacccagc
agctccgcaaactggacagtaggtctgcccaccgataacgggcacgacagcgaccaggtg
tttgagttcaatggcacccaggccatcaaggtccctgatggcctggtgagcaccagcctg
aaggagcccttcaccctctctgtgtggatgagacatggccccggggcccgtgagaaggag
accattctctgcaactctgacaagacagagatgaacaggcaccactactcgctgtacgtc
cacaactgccggctgatcctcctcctgcgccaggacccatcggaggcagagaactacaaa
ccagccgagttccactggaaactggaccaggcgtgtgacaaagagtggcaccactatgtg
ctgaatgtggagttccccacggtgtctctgtttgtggatggcactacatttgagcccttc
ctggttacagaggactacccactgcactccaccaagatcgaatcgcagctcaccattggt
gcctgctggcaagacaactcaggacatgacaatgacactgagtcagtctctgagcccacc
tcaggtggaaatgctaaaatggctcagtttttccggggtaacctagcggggctgatgatc
cgctctggaaagctggagaacaagaaggtgatcgactgtttgtacacctgcaaggaagga
ctggacgtgcagctgcctgaggaggtggcttccgctgtcaaggtggagttcaaccccaac
caatcctctctgaccgtggagggcgacgatattgatgcctttgacaaggtcatgcagcac
atctcctacttgaactcgcgccagttcccgacccctggcatcaggcacctccgcatctcc
accaccgtcaaatgcttcaacgaggactcctgcgtcacagtgccagatgccgaaggttac
gtgatggtgctgcagcctgaagagcccaagatcagcctgagtggcatcgaccactttgcc
cgcagcgctgccgaattcgagagccaggaaggtgtgacgcttttccctgaacttcgcatt
gtgagcaccatcacccgcgaagtggaggccgacactgagtatgaagcgacggagggagct
gatgatgaccctacggtccaagagacagtggtgtcggaagagatcgtgcacaacctggac
acgtgtgaagtgtctgtggtgggagacgagctggacggggagcacgagggcctggaggtg
gacatggcccagctgcagcagcacggcctggagatgagctcctccaacctcggcctcgtc
gtcaccggtgtgaacaccatggccaactacgagcaggtcctgcaccttatccgttacaag
aactggcacaccgaggctctcttcgaccggaaattcaaactggtgtgctccgagctcaac
cgtcgcttcatcagcaatgacttcaaggtcgaggtgaatgtcatccacacagccaaccct
gtggagcatgccaacaatgccatggtgcagcccaacttcattaaccctgtgcatcacgcc
tcggtggatctgaccggtcacaacctggtcaacgctcaccaggcctcagtcatccccagc
gctgccaccattgtcatcgtggtgtgcgttagcttcctggtgtttatgatcatcctgggc
gtgttccgcatccgcgccgcacaccagcataccgcgggagaccaggagaacggcaaggag
aacgagatggactgggacgactcggccctcaccatcaccgtcaaccccatggagacgtac
gaggaccagcacagcagcgaggaggaggaggaagaggaggaggagagcgaggatggagag
gaggaagatgacatcacgagcgctgagtcagagagcagcgaagacgaggagagcgcggag
ccagaggaccagcagggggtcagcagacagcagcagctggagtgggacgactccaccctc
acttactaa
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