Pseudoliparis swirei (Mariana hadal snailfish): 130199477
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Entry
130199477 CDS
T09868
Symbol
lrrfip1a
Name
(RefSeq) uncharacterized protein lrrfip1a isoform X1
KO
K26434
leucine-rich repeat flightless-interacting protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130199477 (lrrfip1a)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Other transcription factors
LRRFIP
130199477 (lrrfip1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRRFIP
Cornifin
MbeD_MobD
Gp5_trimer_C
Motif
Other DBs
NCBI-GeneID:
130199477
NCBI-ProteinID:
XP_056278981
LinkDB
All DBs
Position
2:1992073..2059439
Genome browser
AA seq
1704 aa
AA seq
DB search
MGTQGTGRKRSSKKEKSTAEDDALNLIARDAEARLAAKRAARAEAREIRMKELERQQKEI
FQVQKKYYGLDTKLDDRADHKWGDIDQWMEDSERYSRSSRIQTLSDDDERMSVGSRGSVR
SDLDAVGAYGGGDSLRKSKKKKKHKHKDKDRNGHDDDHSVVSSRSSRLSDESRASRSSRL
ELASSRLSDDTRASRASRLDLQPASYASSDLYSFNGLTSSRTPGSAFNGYKPLEYTSYRS
SGSRASSRAGSARVSPVEHCSSVASYLRSAAAGGGGLPRDLDDVTIPDFPDAGRFSATGS
RGRDVEDRDYLEKGSRAASALTAASLSSVGATSLRRGSGETAITIDAETSIREIKEIHEL
KDQIQDVETKYTQNLKEVKDAFVEVEEKYRKAMVSNAQLDNDKNNLMYQVDTLKDSLMEL
EELLFESRRGYEEKVKDHDREKHAHTVLQFQFGEVKETLKQSEELLNDIRQLRIKQEGFV
REISDLQETVEWKDKKIGALERQKEYTDAIRIERDELREEAVKLKDIVKKHGIVLSPDLT
VNGDIGEAEVGGSPSGDAATRPAPDSHTTPSEGNSILGNTEDTPLRSSGEEEVDPERRRE
MFEDEKENPASCDALCNVAAVSTPETSSEEQPTEEQTCLEEDKKTAAEEDNVEESGLGKD
LNVDNIDQSITEAKCIIIGSPGFKEIGTRSEEIVPETKSPQGGDLGETSHPDVGETSHPD
VGETSHPDVGEISHPDVGEKSHPGVGETSHPDVGETSHPDVGETSHPDVGETSHPDVGET
SHPDVGETSHPGVGETSHPDVGETSHPDVEETSHPDVGETSHPDVGETSHPDVGETSHPD
VEETSHPDVGETSHPDVGETSHPDVEETSHPDVGKTSHPDLGETETKSSRVDIESDEINE
SCKNLFEKQENIREDDESNLLDTESCHQQKVSLMSEGLPDESDPTASNAEPQQEPENADE
PQNDEAEEISGQCQPQDAAASGKKKKRKRRGKKKGGTNKDKNQQKEGIDEEKGREEVDNK
SATRNPQEPEVNGSATETLKKSRVAEVKNEQDGRDEAAKPTETFPTNEPLKESLVELVPD
EPDEEQKLQTENLKEAEPGATPNKERLDHVPDEQNEGPSSEAETVEAVEAVAPGETLSRV
ETLNDSRAKAKKDEGQTFETEEVEEVGSITSPVPETKPSTSDLIDTSKDAERTNGLDGEC
SSSIDNSKSETSISTTDDVTDTESKMDRVEDEVGFIDETQSECTTNNPENTFETSAKEDT
EELHVQSNVDVAAHEPESSIDPESTGKASVSQSSTDVFTDVFADAFLVKSLSGSESPADM
NTGSGGASKGVLGGGPEEARAEAEQDSSPPPGPDGHRLEPKAERTKLNEGLTDAEDLVKS
AQSCEGQSDSCALLVNTTDAFDSVKSPLETAGGAQAGQPGDVHSQDLPEESDAKVSAEAE
KVNTIDVLNTTASPKEATEIGSWTEQDHGAEGSTVPERPNGEKDPQSEAEQPHEPGTDES
EGDDPPGPSLQDGNEEDGDEGLPFDFDDKEAAGANPKQEAVEEGVEVVPDDGSNGSLSNE
NRRAELLESVDEAGTVAGGNRVESPDTAPPDNRRARGDASSKEAGRAANEKQKRIPEEEV
GVADEPRHMAEGGRGLSVGGRGDIVQPPPGEEGLDAMKQELHGRDSPKRAEPVASGQEPQ
QAGSGVKRSSKKGKGKGKEDCKMS
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atggggactcagggcaccgggcggaaaaggtcctccaagaaggagaagtcgacggcggag
gacgatgccctcaacctcatcgcgagagacgccgaggccaggctggcagccaagagggcg
gccagggcggaggcccgagagatccgcatgaaggagctggagcgacagcagaaagagatc
ttccaggtgcagaagaaatattatggcttggataccaaattagacgaccgcgcggaccac
aaatggggcgacattgaccagtggatggaggacagtgagagatactcacgttcttcgcgg
atccaaacgctctcagacgacgatgagcggatgtcagtgggaagccggggcagcgtcagg
tctgatctggatgcggtcggggcttacggtggcggggactcacttaggaagtcaaagaaa
aagaagaaacataagcacaaagacaaagacaggaacggccatgacgatgatcacagtgtg
gtgtccagccggagctccagactcagtgatgaaagccgagcgtctcgctcctccaggctg
gagctagcgagctccaggctgagtgatgacacccgggcgtctcgtgcctccagattagac
ctgcagccggcctcttacgcttcctctgacttgtacagcttcaatggtctgacctcctcc
agaaccccggggtcagcgttcaatggttacaagcctttagagtacacgagctatcgcagc
tccggctccagagcctcgtccagggccggctcggcccgcgtcagcccagtggaacactgc
agctccgtcgccagttacctgaggagtgcggccgctggcggcggcggcctcccccgggat
ctggacgacgttactattcctgactttcctgatgcgggtcgcttttccgccacaggaagc
cgcggccgcgatgtggaggacagagattatcttgagaaggggtctcgagcagcttccgcc
ttaacggcagcgtccctcagctccgtcggcgccacttccttgcggagggggagcggcgag
acggcgataaccatcgacgcagagacttctatacgagaaatcaaggagattcatgagctg
aaggatcagattcaagacgtggaaaccaagtacacgcagaacctaaaagaagtcaaggat
gcgttcgtggaggtggaggagaagtaccgcaaggccatggtgtccaacgcccagctggac
aacgacaagaacaacctgatgtaccaggtggacacgctgaaggactcgctcatggagctg
gaggagctgctgttcgagtcgcgccgcggctacgaggagaaagtcaaggatcacgaccgc
gagaaacacgcccacacggtgctgcagttccagttcggtgaagtgaaggagacgctgaag
cagagtgaagagctgctcaacgacatccgccagctgcgtatcaagcaggagggttttgtc
agagagatctctgacctgcaggagacagtggagtggaaggataaaaagattggggcctta
gagcggcagaaagaatacacagacgccattcgcattgagcgcgatgagctccgagaagag
gcggtgaagctgaaagacattgtcaagaaacacgggatagtactgagtcctgatctcacc
gtcaatggggacattggtgaggcagaggtgggcggctcccccagtggagacgctgccact
cgaccggctccggactcgcacaccaccccgtcggaggggaacagcatactgggcaacacg
gaggacactccattgagaagtagcggagaggaagaggtggatccagagcggcgtcgagaa
atgtttgaggacgaaaaagagaatcctgcgagctgtgacgcgctctgtaatgttgctgct
gtgtccacgccggagacatctagcgaagaacagccaacagaagaacagacatgcttggaa
gaggacaagaagaccgcggcagaagaagacaacgttgaagaaagtggcctcggcaaggac
ttaaatgttgacaatattgaccaatcaatcacagaagccaaatgtataatcataggcagt
cctgggtttaaagagattggaacaaggtctgaggaaattgttccagaaaccaaatcgcct
caagggggagatttaggggagacgagtcacccagatgtaggggaaacgagtcacccagat
gtaggggagactagtcacccagatgtaggggagattagtcacccagatgtaggggagaag
agtcacccaggtgtaggggagacgagtcacccagatgtaggggagacgagtcacccagat
gtaggggagacgagtcacccagatgtaggggagacgagtcacccagatgtaggggagacg
agtcacccagatgtaggggagacgagtcacccaggtgtaggggagacgagtcacccagat
gtaggggagacgagtcacccagatgtagaggagacgagtcacccagatgtaggggagacg
agtcacccagatgtaggggagacgagtcacccagatgtaggggagacgagtcacccagat
gtagaggagacgagtcacccagatgtaggggagacgagtcacccagatgtaggggagacg
agtcacccagatgtagaggagacgagtcacccagatgtagggaagacgagtcacccagat
ttaggggagacggaaaccaaaagcagtcgtgttgacatagagagtgatgaaatcaacgag
tcatgtaagaacctttttgaaaagcaagaaaacattcgggaagatgatgaaagtaacttg
ctagatacagaatcatgtcatcagcaaaaagtttcactgatgtcagaaggtttacccgat
gagtccgacccaaccgcgtcaaacgccgaacctcaacaagagccggagaatgccgacgag
ccacagaacgacgaggcagaggaaatatcaggtcaatgtcagcctcaggacgccgctgct
tcagggaagaagaagaaaaggaagaggagaggcaaaaagaaaggaggaacaaacaaggat
aagaaccaacaaaaagaaggaattgatgaagaaaaaggcagagaagaagtagacaacaaa
tcggctacaagaaacccacaagaacctgaagtcaacggttctgccactgaaactctcaag
aagtcgagagttgctgaagttaagaatgagcaggacgggcgagatgaggcagcaaaaccc
acagaaacctttcctaccaatgaacctctgaaagagtctctagtggaactcgttccagat
gagcccgacgaagaacaaaagttgcagacggagaacttaaaggaagcagaacccggggca
actcccaacaaagaaaggttggatcatgttccggatgaacagaacgagggaccgagttca
gaagctgaaaccgtagaagccgtagaggcagtggcacccggtgaaacattgtctcgcgtt
gaaaccctcaatgactccagagcaaaggccaaaaaggacgagggacaaacctttgaaact
gaggaagtagaggaagtgggatccataacaagtcctgtcccagagaccaagcccagcact
tctgatcttatcgacacctctaaagatgcagaacgcaccaatggtcttgatggagagtgt
tcttccagtatagataactctaaaagtgaaaccagcatctcaaccactgacgatgtcacc
gacaccgagtcaaaaatggatagagtcgaggatgaagttgggttcattgacgagacgcaa
tctgaatgtacaactaataaccccgagaacacctttgaaacgagcgctaaggaagacact
gaagaattgcacgttcaaagcaatgttgacgtcgctgcccatgaacctgaatcctccatc
gatcccgagagtacgggcaaggcgtctgtgtcccagtcctctaccgacgtcttcaccgat
gtcttcgccgacgcttttcttgtcaagagcttgtctggctccgagtcgcccgcagacatg
aacacgggcagcggtggcgcttccaaaggggttttaggtggaggtccagaggaggcaaga
gcagaggctgagcaggactcctctcctcctcccggtcctgatgggcaccgtttggagcca
aaagcagaaagaaccaagttgaacgaaggcttgacggacgccgaagatttagtcaagtca
gcccaatcctgtgagggacaaagtgatagttgtgcattattagttaataccaccgatgcc
tttgactctgtgaagagtccgctggagaccgccggaggagcacaggccggacaaccgggt
gacgtccacagccaggatctgcctgaggagtctgatgccaaagtgtccgctgaagcagaa
aaggtgaacaccattgacgtgttgaatacaacggcctctccaaaagaagcgactgaaatc
gggtcctggacagagcaggaccacggggctgaagggtcgaccgttccagagcgtccaaac
ggtgaaaaggatccgcagagcgaggcggagcaaccgcatgaacccggcacagacgagtct
gagggcgacgatccgcctggaccctccctgcaggacggcaatgaagaggacggagacgaa
ggtcttccttttgatttcgatgacaaggaggcagctggagccaatccaaaacaggaagcg
gtggaggagggagttgaagtcgtgcccgacgacggcagcaatggtagtttgtccaatgag
aataggcgagcggagctacttgagagtgttgacgaagcgggtacggtagccgggggcaac
cgggtagagtccccggataccgcgcctccagacaaccgaagggcccgcggggacgcctcg
tccaaagaggcggggcgggcggcaaatgaaaagcagaaacgcattccagaggaagaagtg
ggcgtggcagatgagcccaggcacatggcagagggagggcggggtttgagtgttggcggg
cggggcgacatcgtccagcctccgcctggagaggaagggctggatgccatgaagcaggag
ctgcacggccgagattcaccaaagagagccgagccggtggcgagcggtcaggagccacag
caggcgggcagcggcgtgaagaggagcagcaagaaaggcaaaggcaagggcaaagaggac
tgtaagatgtcttag
DBGET
integrated database retrieval system
