Pseudoliparis swirei (Mariana hadal snailfish): 130199623
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Entry
130199623 CDS
T09868
Symbol
soga1
Name
(RefSeq) protein SOGA1 isoform X1
KO
K27704
microtubule cross-linking factor
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130199623 (soga1)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
130199623 (soga1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOGA
SOGA1-2-like_CC
TSC22
Rsa3
Motif
Other DBs
NCBI-GeneID:
130199623
NCBI-ProteinID:
XP_056279271
LinkDB
All DBs
Position
9:7586426..7704877
Genome browser
AA seq
1890 aa
AA seq
DB search
MTKTKEIDVNNYPAHLVFASPKERRLHLRQKMESGGGTEGSDSGQTQHAELPAMVAAHPP
GEKKKKVNRASSPARPKDVPGWSLTKIRGGIGTPTLSVKPGAIHLGSRISRRSPVGGLAA
RDSKAEKSAGGKPTGKSSSSSPSASSKTAKAAKSTGGRRKVSDASIGSDDASKDSGCATG
KLSPTDSSSELSDCASEENKLSAEAVSSDAESRSSRGGGPDGEKPLRDRAGHQAAAAKTT
CSSAERDKDRLSLGVGPGEGSISPGEERSVTSFDSRVPASTSLAFSDLTEEFMDGMHEEF
VREIEELRSENDYLKDEMEELRFEMLEMRDMYIEDDVYQLQDLRQQLEQANKTCRILQYR
LRKAERRSLRVAQTGQVDGELIRTLEQDVKVAKDVSIRLHSQLDNVEKKRSHLEQENEEL
RVRLQDLEVAKQVLQQEIDKNSQRKRGARPNNKPDKKLCPQEDSSDLKCQLHFAKEESAL
MCKKLTKLVKDCEAMKEELAKFRSLYGDVNASLTVEEVADSPHTREAEIRVHLKLVEEEA
NLLSRRIVELEVENRGLRAEMDDMKEPHDGPQELSGVGGSLGLGLCGAASSENFMELQRH
LQFVEEEAELLRRSLIEMEEQNKLLMNEINLYKSDLPPPPSAMSSNSLASLTDGLLNDSP
ERAVLISTDAPAHEEELRLAKLQIGELGGKVKKLQYENRVLLSNLQRCDLASYHSPSSSS
SSSSLRLALDTDAEAGDSAECLPSPLNRKEPVGGETDDLEIRERKKKIKDNADATTSLPG
YLGQKDHDALLAIRDQVRLVSTAIQLLTFPESNCLSSSSIYHKVCSNEAAEPCDLEKPQS
HSQISELSDLADRPLVGALTSRLQALHTQLQAFVEQVDSLGKPPAGGRDTQVEGASPLAS
PCASLPCSGDGQDRLNTPAEQQQPDYRDQSEPEVKGQIEETSRSGADKTEKQDDRWLVQG
EKETDDTLPFHDDELRARLSDAEESALGTQGELERHAQRESTLQLTLHQKALLRRDFQLQ
SLGLQARLQRRLWCQERNLLVQESQHLKQDLLLLSLKLRCFLKQWRQGCRKDIEWKDILE
MNSLKDLYLLLEEENLTSPAHQSDKRDKQLLSPNIKSSAVSSTLADLKVALQDLSGELRQ
GRQGSQEITQQFAKAKASWEVEMTVLKSLITQLETKSGKAADALDPPDLKVALKREREEH
QHLLADSYAAVMDLTKQLQIGERNWGREKLELLERFSQERAQWEQRLGEATAQQGKSSGS
ESSADTAVTNGTGLQRTKSTSELDSPEVNGRANQEERIEFAVPELRDLTRKNWTYLTNET
PEVGDTCKTWDGPSGSCSSLVGSELYLETVQRSYTAPDRTGIRIYYSPPAVRRMEHQRRS
QEAKEQQQAQNGSSSLGVSEPNVGMAAVGALAVQPQQPSCFSSSYEQWLSSLSKQHRELL
ESKSGCIGGSILSITGNGVAGSDVGMAPSSAFHDLEIGEISANLSDDMKEMTNCVRQAIR
SSSLERKSSKEPGSQVVGMSTRSTQTAAQSVSIGLQTGNLPGSRGSGFYSKAWSPRPSTT
TTSSLVSARTRQISTSLDKVHSRVDRPCCSPKYGSPKLQRRVSSGSTSRLEGSSSSRDRS
LWSLQQRSIGGGGGGGAGGAGGAGGAGGGGGSAWARSTTTRDSPVLNGLTDGLSSLFSVV
EHSGSTESLWRGDGGASQEASPARQSPAAGKSTSAPVCGSDPSSQRYGGLDQEFFRNVCS
SSNQDPGGVTLCEERAPRDPSGSPGGLSVLGSYGGLDEPKLECVAVGIGGFGSLATCNDS
VTKIVNKRFMRQTAGEEMVGIMGGGKETVGNAGAVAGSWTEDAPCDCAGQSSSCLTRPSR
AAARHSVGQCKHRTQESQAATEEKVDTCNE
NT seq
5673 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaacaaaggagattgatgtcaataactatccggctcacctcgtcttcgcctcg
cccaaggaacggagactccatctccggcagaagatggaaagcggaggcgggacggagggc
tcggacagcgggcaaacgcagcacgcggagctgccggcgatggtggccgctcatcctccg
ggcgagaagaaaaagaaggtgaaccgggcttcgtcccccgcccggccgaaggatgtaccc
ggttggtcgctcaccaagatccgcggagggattgggaccccgaccctgagcgtcaaaccg
ggagccatccacctgggtagccgcatttccaggcgcagccctgtcggaggactggctgca
agggacagcaaggcggagaagagcgctggtgggaaacctacgggcaaatcctcctcctcc
tccccctcagcgtcgtctaaaacagccaaggcggccaagagcactggcgggcggcggaag
gtgtcggacgccagcataggatccgacgatgcgtcgaaggactccggctgcgccaccggg
aagctgtcccccaccgacagtagctccgagctgtcggactgcgcctctgaggaaaacaag
ctctccgcggaagctgtaagcagcgacgccgaatcacggagcagccggggcggcgggccg
gatggcgaaaagccgctcagggacagagccggccaccaagcagccgctgctaagaccaca
tgctcctccgcggagagggacaaggaccggctctccctgggcgtgggccccggggaaggg
agcatatcccccggcgaagagcgttcagtcacctcgtttgacagcagggtccctgccagc
acatccctggctttctcagacctcacggaggagtttatggacggcatgcacgaggagttt
gtccgggaaatagaggagctgaggtccgagaatgattacctcaaagatgagatggaggag
ctgaggttcgagatgctggagatgcgggacatgtacatagaagacgacgtctaccagctg
caggacctacggcaacagcttgagcaggcaaacaagacctgccgcatcttgcagtaccgg
ctgaggaaggcagagcggcgctctctgcgcgtggcccaaacggggcaggtggacggagaa
ctgatacgcacgctggagcaggacgtcaaagtggcgaaggacgtgtccatccgtctccac
agtcagctggacaacgtggaaaagaagaggagtcatctggagcaggagaatgaggagctg
agggtccgcctgcaggacctggaggtcgccaaacaggtcctgcagcaggagattgacaag
aactcccagaggaaaagaggagcacgaccaaacaacaaacctgacaagaagctctgtcca
caggaggacagctcggacctgaaatgccagctccactttgccaaagaggagtcagccctg
atgtgcaagaagctgaccaaactggtgaaggactgcgaggccatgaaggaggagctggcc
aagttcaggtcgctgtacggggacgtcaacgcgtcgctcactgtggaggaggtggctgac
tccccccacacgcgcgaggcggagatcagagtccacctgaagctggtggaggaggaggcc
aacctgctgagtcggcgcatcgttgagctggaggtggaaaacagggggctccgagctgag
atggacgacatgaaggagccacacgatggtccacaggagctttctggtgttggtggcagc
ctgggcctgggactctgcggagcggcttcatccgaaaacttcatggagctccagagacac
ctccagtttgtggaggaggaggcggagctactcaggaggtctctcatcgagatggaggaa
cagaacaaactcctgatgaacgagataaacctctataaatctgatctcccaccgccgccg
tctgcaatgtcctccaattcattagcatcgctgacagatgggctgctcaacgacagcccg
gaaagggcggtgcttatcagcaccgacgccccggcccacgaggaggagctcaggcttgcg
aagcttcagattggagaactgggtgggaaggtgaagaagctgcagtacgaaaaccgagtg
cttctgtccaacctgcagcgctgtgatctggcctcctatcattctccttcctcctcctcc
tcttcctcctcacttcggctggctctggacacagacgcagaggccggagactcagctgag
tgcctcccaagcccgctgaatcgcaaagagccagtcgggggtgagactgacgacctggag
atcagggagcggaaaaagaagatcaaggacaacgctgacgcaacaacatccctccccggg
tacctggggcagaaggaccatgatgccttgctggccattagggaccaggttcgcttggtt
tccacagcgatccagctcctgaccttcccagagtcgaactgcctgtcctcctcgtccatc
tatcacaaggtctgcagcaacgaggcagcagaaccgtgtgacctggagaaacctcagtct
cacagccagatttcagagctgtcggacctggccgaccggcccctggtcggtgctctgacc
agtaggctgcaggccctgcacacccagctacaggccttcgtggagcaggtggacagcctg
ggtaaacccccggcaggtggaagggacactcaggttgaaggagcgtctcctctggcctca
ccctgcgcctctctcccctgctctggagacgggcaggatagactgaacactcctgccgag
cagcagcaacctgattatagggaccaatcagagccggaggtcaaaggtcaaatcgaggag
accagccgatcaggcgccgataagacggaaaagcaggacgatcggtggctggtgcaggga
gagaaggagacggacgatactctgcccttccatgacgatgaacttcgggctcggctgtcc
gacgctgaggagtcggctctcggaactcagggggagctggagaggcacgctcagagagaa
tccactctccaactcacactgcaccagaaggctctgctccgtcgagacttccagctgcag
agtttgggcctccaggctcggcttcagcggaggttgtggtgccaggagaggaatctgctg
gtccaggagtcccagcacctcaaacaggacctgttactgctcagcctcaaactgcgctgc
ttcctcaaacagtggaggcagggctgcaggaaggacatcgagtggaaagacatcttggag
atgaacagcctgaaggacttgtacctgctgttggaggaggagaacctgacgagccccgcc
caccagtctgacaagagggacaaacaactactcagcccaaatatcaagtcgagcgccgtg
agcagcaccttggcggacctgaaggtggcactgcaagatttgagtggagagttacgacag
gggagacaaggctcacaagagatcacacagcagttcgccaaggccaaggcatcatgggag
gtggagatgacggtacttaagagcctcattacgcagctcgagaccaaatcaggaaaagca
gctgatgcactggatcctccggacctgaaggtggcactgaagagggagcgtgaagagcac
cagcacctcctggccgattcctacgcagctgtgatggacctaactaaacagctccagatc
ggggagaggaactggggccgagagaagctggagctgctggagaggttcagccaggaaaga
gctcagtgggagcagagactgggagaggccactgcgcaacaggggaagtcatcaggcagc
gagtcctctgcagacacagccgtcacgaatggaacaggattacaacgaacaaaatccacg
tcagagctggacagcccagaagtcaatgggagagccaatcaggaggagagaattgagttt
gctgtcccagagctgcgtgacctcaccaggaagaactggacctacctaaccaacgagacc
ccagaggttggagacacctgtaaaacctgggacggtcccagcggctcttgcagcagctta
gtaggatcagaactatatctggagactgtccagaggagctacacagctccagaccgcact
ggcataaggatctactacagccctcctgcggtaaggcgcatggagcaccaaagaaggagc
caggaggccaaagagcaacagcaggcccagaacgggagctcctccctgggagtgagtgag
ccaaacgtaggcatggctgctgtgggagcacttgctgttcagccgcagcaaccatcctgc
ttttcatcctcgtacgagcagtggctgagctcgctgtccaagcagcacagggagctgcta
gagagcaaaagtggctgcatcggcggttcgatcctaagcatcaccggcaatggcgtcgcc
ggctcagacgttgggatggcgccctcgtcagctttccacgaccttgagatcggggagatt
tccgccaatttgagtgatgacatgaaagagatgaccaactgtgttcgccaggccatacgc
tcttcctctctggagaggaaatcctccaaggaacctggaagtcaggtggtgggcatgtcc
accaggtccacgcagactgctgcgcaatctgtcagtattgggcttcaaaccggcaacctt
cccggcagcagagggtcggggttctactccaaagcctggtctcctcgcccctcgacaaca
accacttcctcgctagtgtctgcccgaacccggcagatatccacgtccctggacaaggtt
cacagtcgcgtcgacaggccttgctgttcacccaagtatggatcaccaaaactgcaacgc
agagtgtcttctggctccacctccagattggaggggagttcctcttctagggaccggagc
ctgtggagcctccagcaaagatccatcggtggaggaggaggaggtggagcaggaggagca
ggaggagcaggaggagcaggaggaggaggaggctcagcctgggctcgctccaccaccaca
agggacagccccgtcctgaacggcctcactgacggcctctccagcctcttcagtgtggtc
gaacactctggaagcacagagtcgctctggaggggggatggaggagccagccaggaagcc
agtccagctcgacagtctcctgctgcaggaaaatccaccagcgcaccggtctgtggatct
gaccccagctctcagcggtacggaggcctggaccaggagttcttcaggaatgtctgcagc
agcagcaaccaagacccaggaggagtcaccctgtgtgaggagagagctccaagagacccc
agtggcagccccgggggtttgtctgtcttgggaagttatggcggcttggatgagcccaag
ctggagtgcgtggcagtcgggatcgggggatttggatcgctggccacatgcaacgacagc
gtgaccaagatcgtcaataagaggttcatgagacagacggccggcgaggagatggtcggt
atcatgggaggagggaaggaaacagtgggcaatgctggcgccgttgcaggatcttggaca
gaggatgcaccctgtgactgtgctggccagtcctcctcctgcctcacccgaccatcgaga
gcagcagctcgccattcggtcggccagtgcaagcaccgcacacaagagtctcaggcggca
accgaggagaaggtggacacctgcaacgagtga
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integrated database retrieval system
