Pseudoliparis swirei (Mariana hadal snailfish): 130199802
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Entry
130199802 CDS
T09868
Symbol
xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
130199802 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pswi03400
]
130199802 (xpc)
DNA repair and recombination proteins [BR:
pswi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
130199802 (xpc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
130199802
NCBI-ProteinID:
XP_056279569
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Position
9:8073373..8090760
Genome browser
AA seq
938 aa
AA seq
DB search
MSKRRGCAETEARTKKLKRVPQAKSGGAKNKDAGDVITEEEEELKRKVKPKPRGSTKRAL
GTTSSTTSATVKTSKYFQSPVKEEESDSEDDFDMVTSAPPAVTVSTTKTKKEEEEEEEDD
DEEVEEDEEDEDSEEDEVDWEEVEELSGPLGPLGPQEPVLPSQPVEIEIETPEVRKKQKR
KAELETYMRRMVNRYKKDVLIDTHKVHLLCLIASGMFRGRLCTEPDLLAITLSLLPAHFS
MVAKERIDHNYLSGLLKWFSSIFTLNPCLPCEERQNPRALLERRLASLSARNHQEMTHLF
LLVLRSLQFFCRLVISLQPIPLKPPSAKGHGARTSTGTPRKSNTSQQPSKTVCPEQKISP
GTKRPAGGGEITGSRGGKKAKTKEIKEECDKVKKKPKTSGGQRPKNSKRRSIASKVSYKE
ESESGGEREEEGEGLSEEEEFQATSEDSEGGAKSTKWKKGRGKSKPNVTNTAASKERRSD
GGNKQFKDEEGKEWEEEEDEKEEGTMHNQTNRRSVRKNKGPGADEWLEVFLVKTSSWLCV
DVERGVGMPHLCSQNATAPITYVVSVDGNGFLKDLGRKYDPTWLTFSRKRRVDEEWWEET
LGSFLGFEDERDKKEEKELQNKLLNKPLPISITEYKNHPLYALKRHLLKYEAVYPSTATV
MGYCRGEPVYSRDCVHTIHSKDTWLKEARTVLLGEEPFKMVRGFSNHSRKARMASERKDE
NDLALFGEWQTEEYQPPIAVDGKVPRNDYGNVYLFKPCMLPVGCIHLMLPNLHRVAKKLN
MDAAPAVLGFDFHAGYSHAVTDGYIVCEEHEEILRAAWLEDQEIHKQKEKEKKEKRVISN
WTLLVKGLLIRERLKQRYGKKNHGLGSLGETGGLSSDEEEVEAGSPSAKTASETLAMSWP
QNRQAEEEGGSISGLKRKTTTKREKRGQEKHLFPFEKA
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcggagaggctgtgcagagacagaggcccgtacaaagaagctgaagcgagta
ccgcaggcgaagagcggcggagcgaagaataaagatgcaggtgatgtcatcacagaggaa
gaggaggagctcaaaaggaaggtcaaacccaaaccacgtggctccacaaaacgagcgttg
gggaccacctcctccaccacatctgcaactgtcaaaaccagtaaatacttccagtcgcca
gtgaaggaggaggagtctgacagtgaagatgactttgacatggtgacctcagcaccacct
gcggttacagtgagcaccacgaaaaccaagaaagaagaagaagaagaagaagaagacgac
gatgaagaagtagaagaagatgaggaggatgaggacagcgaggaagatgaagttgattgg
gaggaagtggaagagctttctgggccgctgggtccacttggaccacaagaacctgtcctg
ccctcccagccggttgagatagagatcgagactccagaagtcaggaaaaagcagaagaga
aaggcagagctggagacttacatgaggcggatggtgaaccgatacaagaaggacgtgctg
atagacacacacaaggtccacctgctgtgcctgatagccagtggaatgttccgcggccgt
ctgtgcactgaaccggacttgctggccattactctgtcgctgctgcccgcccacttcagt
atggtcgccaaggagcgcatcgaccacaactacctctccggactgctcaaatggttcagt
tcaatattcaccctcaacccctgtcttccctgtgaggaacgtcagaacccccgcgctctg
ctggagaggcggttggccagcctgtctgccagaaaccaccaggagatgactcatctgttt
ctgttggtcctgaggtctctgcagtttttctgccgattggttatttctttgcagccgatt
cctctcaaacccccttcagccaagggccatggggctagaacatctacaggtaccccaaga
aagagcaacacaagccagcaaccctccaagaccgtctgtcctgagcagaagatctctcct
ggcaccaagagaccagctggagggggggagatcacgggaagccgagggggaaagaaagca
aagacaaaagaaataaaggaagagtgtgacaaggtaaagaagaagcctaaaacatcggga
gggcagagaccaaagaactccaaacgtcgcagcatcgcctctaaagtaagctacaaggaa
gaaagtgagagcggaggggaaagggaggaggagggagaggggcttagcgaagaggaggaa
ttccaggcgaccagtgaggattcagaaggaggagctaaatccacaaagtggaagaaggga
agaggaaagagcaaacccaacgtaacaaacactgctgcttcgaaggagaggaggagtgac
ggagggaacaaacagttcaaagacgaggagggcaaagagtgggaggaagaggaggatgag
aaagaagaaggaaccatgcacaaccaaactaatcgaaggagtgtgagaaagaataagggg
cctggcgcggacgagtggttggaggtgtttctggtgaaaacgtcatcctggctctgtgta
gacgtggagcgtggtgtcgggatgcctcacctctgctcccagaatgcaacagcgccgatt
acgtacgttgtgtcggtggacggaaacggttttctgaaggacttgggaaggaagtacgac
cccacctggttgacattttccaggaagaggcgggtggatgaagagtggtgggaagagacg
cttgggtccttcctcggattcgaggacgagagggacaaaaaggaggagaaggagcttcag
aacaaactgctgaacaagcccctgcccatctcaataacggagtataagaaccacccgctg
tatgccttaaagagacacttgctgaaatatgaagccgtctacccatcaacagccactgtt
atgggatactgccggggagagccggtgtactcgagggattgtgtgcatacgatccactcc
aaagacacttggttgaaagaggcacggacggtcctactaggagaggaaccatttaagatg
gtgaggggcttctcgaatcattcccgcaaagccaggatggcgtctgagcggaaggatgag
aacgacctggctctgtttggagaatggcagactgaagagtaccagccgccgatagctgtg
gatgggaaggttccacgtaacgactatggcaacgtctacctgtttaagccctgtatgtta
ccggtgggctgtattcacctcatgctgcccaacctgcaccgcgtggccaagaagctgaac
atggacgccgcccctgcagtcctgggcttcgacttccatgcaggatactcgcatgctgtg
actgatggttacattgtgtgtgaggagcatgaggagattctcagagcggcctggttggaa
gaccaagagattcacaaacagaaggagaaagagaaaaaagaaaagagggtgatatccaac
tggactctgctggtgaaggggctcctgatcagagaaagactgaaacagcgctacggaaag
aagaaccacggactcgggagcctcggagagactggtgggctttcgtcagatgaggaagag
gttgaggctggaagcccttcagccaagacggcatcagagactctggccatgtcctggccc
cagaacaggcaagcagaggaggagggagggagcatcagtggactgaagaggaagaccacg
acaaaacgagaaaagagaggacaagagaagcacttgttcccctttgagaaagcgtga
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