Pseudoliparis swirei (Mariana hadal snailfish): 130199847
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Entry
130199847 CDS
T09868
Symbol
smc1a
Name
(RefSeq) structural maintenance of chromosomes protein 1A
KO
K06636
structural maintenance of chromosome 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04110
Cell cycle
pswi04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
130199847 (smc1a)
04114 Oocyte meiosis
130199847 (smc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pswi03036
]
130199847 (smc1a)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
130199847 (smc1a)
Meiosis-specific proteins
Cohesin complex and associated proteins
130199847 (smc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_15
AAA_29
ABC_tran
Mce4_CUP1
Motif
Other DBs
NCBI-GeneID:
130199847
NCBI-ProteinID:
XP_056279633
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All DBs
Position
9:13430295..13441558
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AA seq
1232 aa
AA seq
DB search
MGFLKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKT
LKDLIHGAPVGKPAANRAFVSMVYQEDNGEERTFTRGIIGSSSEYRINSKVVGLPEYSEE
LEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISRSGDLAQEYDRRKKEMVKAEE
DTQFNYHRKKNIAAERKEAKQEKEEAERYQRLKDEVARASVQLQLFKLYHNECQIEKLNK
ELNQRNNKIDKDRKKMDHVEEELKDKKKELGRLMREQQTIEKEIKEKDSELNQKRPQYIK
AKENTSHKIKKLEAARKSLQNAQKMYQKRKGDMDELDDEMKAVELAKQDFEERMEEEAQS
QGQDLTLEENQVKQYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKVETEAK
IKQKIREIEENQKRIEKLEDYITTSRQSLDEQKRMEEELTEEVESAKRRIDEINTELNQV
MEQLGDARIDRQENSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGK
NMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELRGAKLVIDVIRY
EPPHIKKALQYACGNALVCENVEDARRIAFGGPYRHKTVALDGTLFQKSGVISGGASDLK
AKARRWDEKAVDKLKEKKEKLTEELKDQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLE
QTKTRHLSLNMQEKSKLESELANFGPRINDIKRIVQSREKEINDLRDRMNLVEDEVFIEF
CKEIGVRNIREFEEEKVKRQNEIAKKRLEFETQKTRLGIQIDYEKNQLKEDHEKVMMWEQ
TVKKDEAEIERLKKEEHRHMKIIDETMAQLQDLKNQHLTKKSEVNDKNHDMEDIRKKLGG
ANKELTQIHKEVTAIETKLEQKRSDRHNLLQACKMQDIRLPLCSGTMDDISQEEGSAQAE
VESSSQRTSSTVLAKEALIEIDYGKLSEDLKDELSEEEIKGETNTLQQRLNEQQSILQRI
SAPNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNNCFESVATN
IDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALAL
LFAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKDQSVLNFQAIVISLKEEFYTKADSL
IGVYPEQGDCVISKVLTFDLSQYPDANPNPNE
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgggttttttaaaactgatagagatcgaaaacttcaagtcgtacaaaggaagacagatc
attggaccgtttcacaagtttactgcgatcatcggacccaatggatctggaaagtccaac
cttatggatgccatcagcttcgtgctggcagagaagaccagcaacctgcgtgtgaagact
cttaaggatcttatccatggagcaccagtaggaaagccagctgccaacagagcttttgtc
agcatggtttaccaggaagataacggagaggaacgtaccttcacaagaggcatcattggt
tcctcctctgagtaccgtatcaacagcaaggtggtgggcctgccggaatacagtgaagag
ctggaaaaacttggcattctgatcaaggctaggaacttcctggtcttccagggagctgtg
gagtctattgccatgaagaaccccaaagagcgtacagctctgtttgaggaaatctcacgt
tctggagatctggcccaggagtatgaccgcaggaagaaggaaatggtgaaagcagaggag
gacacgcagttcaattaccatcgtaagaaaaacattgctgctgagcgcaaagaagccaag
caagagaaagaggaggctgagcgttaccagcgtctgaaagatgaagtggccagggcaagt
gttcaattgcaacttttcaagctataccacaatgagtgtcagattgagaagctgaacaaa
gagctgaaccagcgaaacaataagatcgataaggaccgtaaaaaaatggaccatgtggaa
gaggagctgaaggacaagaagaaggagctgggcagactgatgagggagcagcagactatt
gaaaaagaaatcaaagagaaagactctgaattgaatcaaaagaggccgcagtacatcaag
gccaaggagaacacgtctcacaagatcaagaagcttgaggcggcgcgcaagtcattgcaa
aatgcccagaagatgtaccagaaacgcaagggggacatggatgagctggatgatgaaatg
aaggcagtggagctggccaagcaggactttgaggagcgcatggaggaggaggcacagagc
caaggccaggacctcaccctcgaggaaaaccaggtcaagcagtaccatcgtctgaaggag
gaggccagtaaacgtgctgccaccctggctcaggagctggagaagttcaaccgcgaccag
aaggccgaccaggaccgcctcgacttggaggagaggaagaaagtggagaccgaggccaaa
atcaaacagaagatacgtgaaattgaagaaaaccagaaacgtattgagaaattagaggat
tacattaccaccagcaggcagtcgctggatgagcagaagcgcatggaggaggagctgact
gaagaggtggagtcggccaagaggagaattgatgagatcaacacggagcttaatcaggta
atggagcagctgggagacgccagaatcgacaggcaggagaacagtcgccagcagcgcaag
gctgagatcatggagagtatcaaaagactctacccgggctctgtgtatgggcgtctaatc
gacctgtgccagcccactcagaagaagtatcagattgctgtgaccaaggtgttgggcaag
aacatggacgccatcattgttgactctgagaagactggcagagattgtattcaatacatc
aaggagcagagaggagagcccgaaaccttccttcccctcgactacctcgaggtgaaacca
acggacgagaaattgagggagctgcgaggagccaaactggtgattgatgtgattcgctat
gagccgccccacatcaagaaagccctccagtacgcctgtggcaacgccctggtctgcgag
aacgtagaggatgcgcgaaggatcgctttcggagggccatacagacacaagacggtagcc
ctggatggtactctgttccagaagtctggagtcatctctggaggagccagcgacctaaag
gccaaggccaggcgctgggatgagaaggcagtggacaagctcaaggagaagaaagagaag
ctcactgaagagctcaaggaccaaatgaaggccaagaggaaggaggcagagctgcgtcag
gtgcagtctcaggcccacggtctgcagatgagactgaagtactcccagagtgatctggaa
cagacgaaaacccgtcacctctccctcaacatgcaggagaagtctaagctcgagagtgaa
ttggccaactttggccctcgcatcaatgacatcaagaggatcgtccagtcccgtgagaag
gagatcaacgacctgcgagaccgcatgaacctggtggaggatgaggtgtttattgaattc
tgtaaagagattggcgtgaggaacatcagagagtttgaggaggagaaggtgaagaggcaa
aatgagattgcaaagaagcgtcttgagtttgagacccagaagacccgcctcggtatccag
atcgactatgagaagaaccagctgaaggaggaccatgagaaagttatgatgtgggagcag
accgtcaagaaggacgaggctgaaatcgagcgactgaagaaagaggagcacagacacatg
aagatcattgatgagacaatggcacaacttcaggacctgaagaaccaacacctcaccaag
aaatctgaagtcaatgataagaaccatgatatggaggacatccgcaaaaagctggggggt
gccaataaggagttgactcagatccataaggaagtgacggccattgagaccaaactggag
cagaagcgtagtgaccgtcacaacctgcttcaagcctgcaaaatgcaggacatcaggttg
cctctttgttctggaacgatggatgatatcagccaggaagaggggagcgcccaggcagaa
gtggagtcgagcagccagaggacgtccagcactgttctcgctaaagaggccctcatagag
atcgactacggcaaactgtctgaagaccttaaggatgaactgtcagaggaggagatcaag
ggggagaccaacactctgcagcagcgtctgaacgagcagcaaagtatcctccagaggatc
agtgcacccaacatgaaggccatggagaagctggagagcgtcagggacaagttccaagag
accagtgacgagtttgaggctgcccgtaagagagccaagaaggccaagcaagcctttgag
cagatcaagaaggaacggtttgaccgtttcaacaactgcttcgagtcggtggccaccaac
atcgatgagatctacaaggccctctcacgcaacagcagtgcccaggctttcctaggccca
gaaaacccggaggagccgtacctggatggcatcaactacaactgtgtggctccgggaaag
cggttcagacccatggacaacctgtctggaggagagaagactgttgcggccttggctctg
ctctttgctattcacagctacaaacccgctcccttcttcgtcctggatgagattgatgct
gctctggacaacacgaacatcggcaaggttgccaattatatcaaagaccagtcggtgctg
aacttccaggccatcgtcatttctctgaaagaggaattctacaccaaggcagactcactc
atcggtgtttatccagagcaaggagattgtgtcatcagtaaagtgcttaccttcgacctc
tcccagtatcctgatgccaacccaaatcccaatgaatag
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integrated database retrieval system
