Pseudoliparis swirei (Mariana hadal snailfish): 130200125
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Entry
130200125 CDS
T09868
Symbol
ube4b
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04120
Ubiquitin mediated proteolysis
pswi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130200125 (ube4b)
04120 Ubiquitin mediated proteolysis
130200125 (ube4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pswi04121
]
130200125 (ube4b)
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130200125 (ube4b)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
U-box type E3
130200125 (ube4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
130200125
NCBI-ProteinID:
XP_056280091
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All DBs
Position
9:complement(11464847..11482094)
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AA seq
1037 aa
AA seq
DB search
MPISQRYRPYSVTSPWGAPSPSSPGQSGFTFLGPSLSPAGPSVPPNTPVPVPPPSPQSLS
LSSPRVPNQPSSTSLSMVPPSPRSNTRQAAFASRIPPSSPLSVLSFALSDMSQDSSDDDS
EEEDFARVQFGSSLGASGGVMSCNSASDRFTIETCKETEMLNYLIERFDSVGMEERKAPK
ICSQPNVSQLLSNIRSQCISHISLVLQGTLTQPRSPLHQSLLVPYLLCRNLPYGFIPELV
RITHQEEGAFSQIFTPILHGLALAVKECSFDSDNFKFPLMALAELCEIKFGKTHPVCNLV
TSLPLWCPKPLSPGCGREIQRLSYMGAFLSLSVFAEDDTKVGDKYFSGPAITIENTRVIS
QSLQHYLESARGDMFKVLHNILLNGETREPALNYMASLVNYNVKKAQMQTDDKLVSTDGF
MLSFLWVLQQLSMKIKLETVDPYYIFHPRCRLVVSLEETRLKATMEELKSWLTDLHEGPT
KFSEPKFPTECFFLTLHAHHLSILPGCRRYIRRLRAIRELNRTVEELKNSESQWKDSPLA
SRHREMLKRCKTQLKKLVRAKACADVGLLDENLLRRCLQFYSTVIQLILRMVDPAYPNIN
LPLHPEIPKSFAALPEFYIEDVAEFLLFVVQYSPQVLYEPCVQDIVTFLVVFICSQNYIR
NPYLIAKLVEVLFVTNPAVQPRTQRFSEMMENHPLSVKQLVPALMKFYTDVEHTGATSEF
YDKFTIRYHISTIFKSLWQNLAHHGTFMEEFNSGKQFVRYINMLINDTTFLLDESLESLK
RIHEVQEEMKNKEQWEQLPREQQQSRQSQLTQDERVSRSYLALATETVEMFHILTKQVQK
PFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCAR
FAKAIADDQRSYSRELFEEVISKMRKAGIKSSIAIEKFKLLSDKVEEIVAKNSQSEMDYS
DAPDEFKDPLMDTLMTDPVILPSGNIMDRSIILRHLLNSPTDPFNRQPLTESMLESVPEL
KEKIHTWMREKQGGRPV
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgcccatctcacaacgctatcggccttactctgtcacctctccttggggggctccttcc
ccatctagtcctggtcaaagcggatttactttcttaggaccctctctgagccctgcaggg
ccctctgttcctcctaacaccccagttcctgtgccacctcccagcccccaatccctctcc
ttgagctcacccagggttcccaaccaaccctcctccacatccctttccatggtgccccct
tctcccagatcgaatacccgacaggccgcctttgcttccaggatcccaccgtctagcccc
ttgtcggtcctgtcctttgccctctctgacatgtctcaggacagcagtgatgacgattct
gaggaggaggattttgcacgggttcagtttgggtccagtctcggtgcatctggaggagta
atgtcctgcaattcagccagcgaccgcttcaccattgagacttgcaaagagacagagatg
ctgaactacctcattgagcgttttgacagtgttggcatggaggagagaaaagctcccaag
atttgtagccaaccaaatgtcagccagcttctcagcaacattcgctctcagtgtatttct
catatttccctggtcctgcaaggcaccttgacccagccacggagccctctgcatcagtct
ttgctggtaccttatctgctgtgtcgaaaccttccatatggctttattccagagctggtg
cgcatcacccaccaggaggaaggggccttcagtcagatcttcactcccatcctccatggg
ctggctcttgcagtgaaagaatgttccttcgacagtgacaactttaaatttccccttatg
gcattagccgagctttgtgaaatcaagtttggaaaaactcacccagtgtgcaatttggta
acgtcgctgcctttgtggtgtcccaaacctctgagccctggttgtggcagagagatccag
agactttcctacatgggagccttcctcagtctctctgtgtttgctgaggatgatacaaaa
gtgggagacaagtatttctctggcccagccatcaccatagagaacacgcgagtcatcagc
caatcattgcagcactacctggagtcggctcggggtgacatgttcaaagttctccataac
atcctactaaatggagaaacgcgtgagccagcgcttaattacatggcatctctggtcaac
tacaatgtgaagaaagctcagatgcagactgatgacaagctggtgtcgaccgacggcttc
atgctcagcttcttatgggtgctgcaacagctgagcatgaagatcaagctggagacagtg
gacccgtactacattttccacccacgatgtcgccttgttgtcagcctggaggagacgcgt
ctgaaagccaccatggaggagctcaagagctggctgacggatctgcatgaaggccccacc
aagttctcagaaccgaagttccccactgaatgtttcttcttgacgctgcacgcccaccat
ttatccatcctgcctggctgcagacgttacatccgcaggttgcgggccatccgcgaattg
aacaggactgtagaggagctgaagaacagtgaaagccaatggaaagattctcccctggct
agtcggcatcgagagatgctcaagcgttgcaaaacccagctcaagaaactggtgcgcgcc
aaagcatgtgctgacgtgggccttctggatgagaacctgctccgcagatgtctgcaattc
tacagcacagtcatccagctcatccttcgcatggtggaccctgcctaccccaacattaac
ctgccgctgcaccctgagattcccaaaagctttgctgctctgcctgagttctacattgaa
gatgtcgcagagtttctgctttttgttgtgcagtattctccccaggttttatatgagccc
tgtgtgcaggacatcgtcaccttcttggtggtgttcatctgcagtcagaactacatcagg
aacccttaccttatcgccaagttggttgaggtgctgtttgtcaccaaccccgctgtacag
cctcgtactcagcgattctctgaaatgatggagaatcacccgttgtctgtcaaacagctg
gtccccgccctcatgaagttctacactgatgtggagcataccggcgccaccagcgagttc
tatgataaattcactatacggtaccatatcagtactatcttcaagagtctctggcagaac
cttgcccaccatggtaccttcatggaggagttcaactctggcaaacagtttgtgcgctac
atcaacatgctgattaatgacaccaccttcttgttagacgagagcctcgagtctctgaag
cgtatccacgaagtccaagaagagatgaagaataaggagcagtgggaacagctgcctagg
gagcagcagcagagtcgccagtcccagctgactcaggatgagcgggtgtctcgctcttat
ctggccctggccacagagacggttgaaatgttccacatcctcaccaagcaagtccagaag
cctttcctcaggcctgagctcgggcctcgtttagccgccatgctgaactttaacctccag
cagctttgtgggccgaagtgtcgggacttgaaggtggagaatcccgagaagtatggcttt
gagcccaagaagctcttagaccagctgactgacatctacttgcagctcgactgtgcccgc
tttgctaaagcaattgcagatgaccagcggtcttacagccgcgagctttttgaagaggtg
atctcaaagatgaggaaggctggcattaagtcctctattgccattgaaaaattcaagctg
ctatcggacaaggtggaggaaatagttgccaagaactcccagtctgagatggactacagt
gacgcacctgacgagttcaaagaccctctgatggacacactgatgacggaccctgtgatt
ctgccttcgggcaacatcatggatcgatccatcatcctgcgccacctgcttaactccccc
actgatcccttcaaccgacagccactcacagagagcatgctggagtcagtccctgagctg
aaggagaagatccacacctggatgagagagaaacagggcgggcggcctgtctga
DBGET
integrated database retrieval system
