KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130200148
Entry
130200148         CDS       T09868                                 
Symbol
kdm5bb
Name
(RefSeq) lysine-specific demethylase 5B-B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pswi01009]
    130200148 (kdm5bb)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pswi03036]
    130200148 (kdm5bb)
Enzymes [BR:pswi01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     130200148 (kdm5bb)
Protein phosphatases and associated proteins [BR:pswi01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     130200148 (kdm5bb)
Chromosome and associated proteins [BR:pswi03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    130200148 (kdm5bb)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID PHD zf-C5HC2 JmjN PHDvar_NSD PHD-1st_NSD
Other DBs
NCBI-GeneID: 130200148
NCBI-ProteinID: XP_056280139
LinkDB
Position
9:20005074..20028045
AA seq 1538 aa
MSQPRPDEFKPPPECPVFEPSWEEFRDPFSFINKIRPIAEKTGICKVRPPPGWQPPFACD
VDKLHFVPRIQRLNELEAETRVKLNFLDQIAKFWDLQGCALKIPHVERKFLDLYKLNKLV
AEEGGFDIVCQERQWTKIAIQMGFAPGKAVGSHLRGHYEKILYPYNLFQSGANLLAPEPA
SKQMHLKADPELEKSVEKPIQPMESTESLDSKDTKLQDQAQRTTAQTPDTSPTARRAKRM
KCESVCVKTEPGEPGDNKPNLRRRMGSFVVKQEPEKEVPVKQEPVETKEPIIEADKSKSR
YKKIIPPVLPSPVDLVVCLVCGSGGDEERLLLCDGCDDSYHTFCLIPPLSDIPKGDWRCP
KCLAQECNKPHEAFGFEQAYRDYSLRAFGQMADAFKSDYFNMPVHMVPTELVEKEFWRLV
GAIEEDVTVEYGADIASKEFGSGFPIPNGKFKVSPADEKYLKCGWNLNNLAMMNPSVLTH
VTADICGMTLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGAPGFAAEQLEEVM
RKLAPELFESQPDLLHQLVTIMNPNTLMAHGVPIYRTNQCAGEFVITFPRAYHSGFNQGF
NFAEAVNFCTVDWMPLGRQCVDHYRMLSRYNVFSHDEMVCNMASKAGTLNVVLASAVHKD
MVSMLREEQKQREKSKKMGMVLTKKAKYDHLQDDERQCTRCRTTCYLSAVTCSCSPGVLV
CLHHINDLCSCPITNYTLNLRYTLDELFPMMNAVKQRAELYDEWASLVKEILEAKLEKKK
GLQIFRSLLAQSESKMFPDNDMLRRLRLVTQDAEKCSSVAQQLLNGKRQTRYRFGSGKSR
SQLSVEELSSFVRQLYNLSCSLPQAPMLKELLNRIEDFQQHSEKVLADEVPSVAEIQGLL
DVSFDFDVELPELPRLRVRLEQARWLEGAQQASTQPTTRTLETMRRLIDQGVGLVPHPSV
EKAMARLQELLTVSEHWENKASSLLKARPPHSIETLSAAAEKTSGIPACLPNCRLLKDTV
RKAREWLQEAEELQVGDCAPMMDSLSDMVLRGQAIQVRLEPLERLESLMMEVQEWRESAS
TTFLLRDTTFTLLEVLCPRCEVGNVGSPKRKAKKGKESPRSNKKKPPRLNTLSDVEKALL
ETRDSTSAMATLEELREREMEAFANLRAANESKLLPTADCMDLKVCVCQKAPMGAMSQCE
LCRNAFHSVCVRDPSDSCETQPWLCPQCQRSEKPPLNKAVSLLASLRRIGVRLPEGEALH
YLVERTVNWQQRAQEISQYFNLPELEERPGTPPILTRWASGSHDDHNNTQAPCLTPEWSG
TSHSQTVFYTEQRCIPLQGLSHDLEELMVEGLLLQVCLPEVQSLFHVLLDRASSQHTNRC
MSPPQEESTDCDKRTQFNSQGTNLPLNQDGVNGVRETMIDSEKKAKRHLEREGLNAERRV
KDKKHSHKRQKMNKKRPASTSSSPRSDFSQSDDSDEEMAVCPAERCQLPEGDEVNWVQCD
GSCNQWFHQVCVGVTAEMAEKEDYICVRCTLKDGHMRK
NT seq 4617 nt   +upstreamnt  +downstreamnt
atgagccagcctcggccggacgagttcaagcctcctccggagtgcccggtcttcgaacca
agctgggaagaattcagagacccgttttccttcatcaacaagatccgacccatcgccgaa
aaaacgggcatctgcaaagttcgcccgcctccgggttggcaacctccatttgcttgcgat
gttgacaaacttcactttgttcctcggatccagaggctcaatgaacttgaggcagagacc
agagtcaaactcaatttcttggaccagattgccaaattctgggatttgcagggatgtgcc
ctgaagattcctcatgtggagcggaagtttttggatttatataagctaaataagctggta
gcagaggagggtggatttgacattgtctgtcaggaaaggcaatggacaaagattgctata
caaatgggttttgcccccggcaaagctgttggctcacacctgcgagggcattatgagaaa
attctctatccctacaatctgtttcagagtggagcaaacctgctggcaccagagccagct
tccaaacagatgcatttgaaggctgaccctgaacttgaaaagagtgttgagaagccaatc
cagccaatggagagcacagaaagcctggatagcaaggacaccaagctgcaggaccaggct
cagaggacgactgcccagacgcccgacacgagccccactgctcgcagagcaaagcgcatg
aagtgtgagtccgtctgtgtgaagacagaaccaggtgagcccggtgacaacaagcccaac
ctgaggcggaggatgggttcgtttgtcgtcaagcaagaaccagaaaaagaggttccagtg
aaacaggaaccagttgaaactaaagaaccaataattgaagctgacaaatccaagtcacgg
tacaagaaaatcatccctcctgttcttccgagtccagtggatctggttgtgtgtctggtg
tgtggcagcgggggagatgaagaacgcctgttgctgtgtgacggctgtgacgacagctac
cacaccttctgcctcatccctcctctatcagacatccccaaaggagactggaggtgcccc
aagtgcctcgctcaggaatgcaacaagcctcacgaggcattcggctttgaacaagcatac
agagactattccctgcgtgcatttggacaaatggctgacgctttcaaatctgattacttc
aacatgccagttcatatggtacccacagagctggtggagaaagagttctggcgtttggtg
ggagccatcgaggaggatgttactgtagaatatggagcagatattgcctcaaaggagttt
gggagcggattccccattccgaatggaaaattcaaagtttccccggctgatgagaaatac
ctgaagtgtggctggaacctcaacaacctggcgatgatgaacccttctgtactgactcat
gtgacagctgacatctgtgggatgacgctgccgtggctttatgttggcatgtgcttctcc
tccttctgctggcacattgaggatcactggagctactccatcaactacctgcactggggg
gagcccaaaacctggtatggagctcctggttttgctgcagaacagctggaggaggtgatg
aggaaactggccccagagctgtttgagtctcagcctgacctattgcaccagctggtcacc
atcatgaaccccaacaccctgatggcccacggagtcccaatttacagaacaaaccagtgt
gctggtgagtttgtcatcacgtttcccagagcgtaccacagtggcttcaatcagggcttc
aacttcgctgaggcggtcaacttctgcactgtagactggatgcctcttggccggcagtgt
gttgaccactatcgtatgctgagccggtacaacgtgttctcccatgatgagatggtgtgc
aacatggcctcaaaggcaggcacgctcaacgttgtcctggcgtcagctgtccacaaggac
atggtcagcatgctccgggaagagcagaaacaaagagagaagagcaagaaaatggggatg
gtgctgaccaagaaggcaaaatacgatcacctccaggacgacgagcggcagtgtaccagg
tgcaggaccacctgctacctgtccgctgtcacctgctcctgcagcccaggagttctggtc
tgtctgcaccacatcaacgacctctgctcctgccccatcaccaactacacactgaatctc
agatacacactggacgagctgttccccatgatgaatgcagtgaagcagcgagctgaactg
tatgatgaatgggcctctcttgtgaaagagattcttgaggctaaactagaaaagaagaaa
ggcttgcaaatctttcgctcccttcttgctcaatcggagtccaaaatgttcccggacaac
gacatgctgcgtcggctacgtctggtcacacaagatgcagaaaagtgctcctcggtggca
cagcagctcttgaatggcaagaggcagaccaggtatcgttttggaagtggaaaatcacgc
agccagctgagtgtggaggagctgagttcatttgtgaggcagctgtataacctctcctgc
agtctccctcaagctcccatgttgaaggaactcttgaatcgcatcgaagacttccaacag
cacagtgagaaggtcctggcagacgaagttcccagcgtcgctgagatccagggcctgttg
gacgtcagctttgacttcgacgtagagctgcctgagctgccccgcctgagagtgaggctg
gagcaggcacgctggctggagggggcgcagcaggccagcactcagcctaccacccggact
ctggagaccatgaggaggctcatcgaccagggagtcggcctggtgcctcatccatctgtg
gagaaagccatggcccgcctgcaggagctgctcactgtatccgagcactgggagaacaag
gcgagcagtctcctcaaagccagaccaccacactccatagagactcttagtgctgcagct
gagaagacgtctggcatccccgcttgcctcccgaactgtcgccttctaaaagacaccgtc
agaaaagccagagagtggcttcaagaagctgaggagctccaggtcggtgattgcgcaccg
atgatggacagcctctctgacatggtactacgaggtcaagccattcaagtccgcctcgag
cctttagaacggctggagtctttaatgatggaagtgcaagaatggagagaatcggcatcg
acaaccttccttctgagagacacaacctttactttactggaggtcctgtgtccaagatgt
gaagttggtaatgtaggttctccaaagaggaaggccaagaaaggaaaagaatcgccgaga
agtaacaaaaagaaaccgccacggctaaatactctcagtgacgtggaaaaagctctttta
gaaaccagagattctacctctgcaatggcaactctggaggagctgcgggagagggagatg
gaggcttttgctaatctcagggcagcaaatgagtcaaagctccttcctacagcagactgc
atggacctgaaggtgtgcgtctgtcagaaggcgcccatgggtgcgatgtcacagtgtgaa
ctctgcagaaatgctttccacagcgtgtgtgtcagagacccgtcggactcctgcgaaacg
cagccgtggctttgtccgcagtgccagcgatcggagaagcctcccttgaacaaagccgtc
tctctgctcgcgtccctgcggcgcatcggggtgcgcctgccggagggcgaagcgctgcac
tacctggtcgagaggacggttaactggcagcagcgagcacaggagatctcgcagtatttt
aacctaccggaactggaagagagacctggaactcctcccattttaactcgctgggcatcg
ggcagccatgatgatcacaacaacactcaggctccgtgtttgactccagagtggagtggg
acaagccattctcagactgtcttctacaccgagcagagatgcatcccgctgcagggcctg
agtcatgatctcgaggagctgatggtggaggggctcctgctgcaggtgtgtctgccagag
gtgcagagcctcttccacgttttattggacagagccagcagccagcacacaaaccgatgc
atgtcaccaccgcaggaagaatccacagactgtgacaaacgcacgcagtttaactctcag
ggaacaaatctgccactgaaccaggatggcgtcaatggtgtgagggaaactatgattgac
tcggaaaagaaagcaaagcggcatctggagcgggaagggttaaatgcagagcgcagagtg
aaggacaaaaagcactcccataaaagacagaagatgaataaaaagaggccggcctcgacc
tcgtcctctccacgctctgatttctcgcagtccgatgactctgatgaggaaatggctgtg
tgtccggcagagaggtgccagctgccagagggagacgaggtgaattgggtccagtgtgac
ggcagctgtaaccagtggttccaccaagtctgcgtcggtgttacagcagagatggcagag
aaggaggactacatttgtgtcaggtgtacactgaaagatggacacatgaggaaatga

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