Pseudoliparis swirei (Mariana hadal snailfish): 130200173
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Entry
130200173 CDS
T09868
Symbol
nphp4
Name
(RefSeq) nephrocystin-4 isoform X1
KO
K16478
nephrocystin-4
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
pswi03037
]
130200173 (nphp4)
Cilium and associated proteins [BR:
pswi03037
]
Primary cilia and associated proteins
Nephronophthisis-related proteins
130200173 (nphp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF2155
Motif
Other DBs
NCBI-GeneID:
130200173
NCBI-ProteinID:
XP_056280182
LinkDB
All DBs
Position
9:3839732..4019418
Genome browser
AA seq
1432 aa
AA seq
DB search
MVKAEDALDMADGWKEVFERSRVIPPPGQTVRLALDNHLTQPHGFQLRLSRLTAAHLPQS
QEMSGGEQDVTHQLRVTLFDRNHQQFFGNTWRSPPQSMKNNKISLNEVLYFHTSLRLPSV
AMVLELVSLSPRPDGSQQALGRGFTVLELFTNRPEVQASDGVQRLNLHHGSPRGLLHPLL
KDTVDYGSLLTAIDGAHLDCVMKNHAALAPAMHLLPENVLVSGNENVPGLAASPTGDALL
RPQLLKTLPFTLSGLTVSLQPSLEKFESQLLERINADCHNTKQPGPEGTARTVVIQERRL
HVGVHNGWCFLDKPQVAVLEPLASGSRGRSTLGKDSSATSTLPQTLGLRSSLELRLANHR
ALAIVFQLECVFSAPIGRETMLSATSASRAAFLQCLRWGAWCPFQEPADWKGEEIQVVLR
GGAEPNPHGVMTYSSETSANAKSPAPLLAAGSAQLSPLPGTKDTITFRLSSALERKTSGS
PKASPRTTQEEVSRHRRSPSRGQRSFPPASPPESPQGPGLSLSQLAATSRYPTISHSSSA
LPWQQSSPSLLHPSLLASAHQLSHVACSGVGSIAHLEMEPQREGDASQDEGDQLQELPFT
PVHAPVITLGVSMPSSCSASSRSSLAHLYSAGFPDIVDGDGQAAEVLDPTEPVTFDPHRE
DAAPLRGDLLVFQFLAFTRTPAAVGGPDWPKNIYFTFQFYRFPPVTSQQLKLLTGDKVQQ
KAAGPLPRVLASINRDGTVNSAPPGLQVQFRVDGGFLKPGEKRWFLRYLALHSMHIDVWD
GDSLLLIGSTAVELKYLLRQGRSAVQALHEVEVLTTDYVGEDALLTGAHEGGRRPPALGP
MNVHTVVMGRLHVRTGNVGCPVDPSRRKAAADAAAPHSNIITPRQVIGGFRGGSLSSRNI
LRLNARNAAQAHRLGGPDPNEPDGAGRRKLECMAAVHRREGTEEAKVTDRTKEARSAREL
HHVQPNEIHNQAEGIANMLSQAITTRHLLYANLGTAEYMEFVLKNPFNVPQTVTVHSDDP
ELSAITNTEEWAYFKALCRTTTPLEENMFHLEEGAPGPRVYLRPKESIHIPLKYQSFLCD
HTMALQGPSFQPPGKGSQAAKRNLSNIVAAKTIKVTFAAEDGKPMAICQVDVEPTPHVVD
QTFRLYHPELCFLKKAIRLPPWNDPTVGDPDVRTHISVRCSDPNIICQTRMLAPGEPRDV
YLKVPGSPSPNIKMFFVMVFTDQWMAVPSQIWQIYVHFLERVDVSCVTGQRSCQSLVLRG
KQAVRKVKCFSSHPQEIEVDPEGVFVLPPAAVQELQLKVQPWRAGSRFLYVNAVDVENRR
LVTAWLLCLNVHRPVLSKAFEVCVPVGGGRGSSRKITYTNPYTGGRSFLLRSDHPDLLQF
KEEKFQIGAGESYTIGLRFAPSQGPGSLEILVYVNNLEEKTEETFCVKVNYS
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaagcggaagacgcgctcgacatggccgacggctggaaagaagtgtttgaaaga
agccgggtgattcctccgcccggccagactgtgcgcctggctctggacaaccacctcact
cagccccacggcttccagctccgcctcagccggctcaccgcagctcacctcccgcagtcc
caggagatgtcagggggggaacaagatgtgacccaccagctgcgagtgaccctgtttgat
agaaaccaccagcaattctttggaaacacatggaggagtccaccccagagcatgaagaac
aacaagatctccctcaacgaggtcctgtatttccatacctctctgcggttgcccagtgta
gcgatggtcttggagctggtgtccttatcacccaggccagatggctcccagcaggccctg
gggcgaggcttcaccgtcctggagctttttaccaaccggccagaggttcaggcgtctgat
ggtgtccaaaggctgaatctacaccatggctcaccaagaggtctcctccatcccctcctg
aaggacacagttgactacggcagtctcctgacggcgatcgacggagcacatttggactgc
gtgatgaaaaaccacgccgcgctggctcccgccatgcacctgctgccggagaacgtcctg
gtatccgggaatgagaacgttcccgggctcgcagcttctccaacaggagacgctttgctg
aggcctcagctgctcaagacgctgcccttcaccctgagcggactgaccgtctccctccag
ccgtccctggagaagtttgagagtcagctgctggagcggatcaatgccgactgccacaac
acgaagcaaccgggaccagagggcaccgcgagaaccgtcgtcatccaggaaaggaggctt
cacgtcggcgtccacaacggctggtgtttcctggacaagcctcaagtggcggtgctggag
cccctggcctcggggtcgagaggtcgctccaccctgggcaaggacagctctgcgacatca
accctccctcagacgttgggccttcgcagcagcttggagctcaggctggccaatcatcgc
gctttggccatcgtcttccagctggagtgcgtcttctccgctccgattggccgagagacg
atgctgtcggccacctccgcgtcccgagcggccttcctgcagtgcctccgttggggagct
tggtgccccttccaggagccggcggactggaaaggggaagagatccaggtggtcctgcga
ggcggtgcggagccgaaccctcacggggtcatgacctacagctcggagacgtcggccaac
gccaagagcccggcgccgctcttggctgcaggctcggctcagctttctcctctcccgggg
accaaggacaccatcacatttcgtctgtcgtccgctttggagaggaagacgtccggcagc
ccaaaggcatcgccgaggacaacgcaggaggaggtgtcccgtcacagaagatcgccatcg
cggggtcaaagatcttttccaccagcttctcctccagaatctcctcaaggccccgggctc
tcgctgtctcagctcgcggcgacttcacgctacccgacgatcagccactcaagctcggcg
ttgccgtggcaacagtcgtctccttctctgctccatccgtccctgttggcgtcggcccac
cagctgtcacatgtcgcctgctcgggggtcggcagcatcgcccacctggagatggaacct
cagcgggaaggggacgcgtcccaggacgaaggagaccagctgcaggagctgcccttcacc
cccgtgcacgcccccgtcatcaccctgggggtgagcatgcccagctcctgctccgccagc
tccaggagctcgctggcccacctctactccgccggcttccccgacatcgtggacggcgac
gggcaggcggcggaggtcctggaccccacggagcccgtgacctttgaccctcaccgcgaa
gacgccgcccctctccgcggcgacctgctggtgttccagttcctggcgtttaccagaaca
ccggcggcggtcggcggccccgattggcccaaaaacatctacttcaccttccagttctac
cgctttccaccagtcacgtcgcagcagctcaaactgctgaccggcgacaaggtccagcag
aaagctgcgggtccacttccccgagtcctggcctccatcaacagagacggcaccgtgaac
tccgcccccccgggcctgcaggtgcagttcagagtggacgggggtttcctgaagcccggg
gagaagcgctggttcctgcgctacctggccctgcacagcatgcacatcgacgtctgggac
ggcgactcgctgctcctcatcggctccaccgccgtcgagctcaagtacctgttgcgtcag
ggtcggtcggcggtgcaggccctccacgaggtggaggtgctgaccacggactacgtggga
gaggacgccctgctgaccggcgcccacgaggggggccgccggccgccggctctcggcccc
atgaacgtccacaccgtggtcatgggccggctgcacgtccgcacgggcaacgtagggtgc
ccagtggatccgagcaggaggaaggcggcggcagacgcggcggcgcctcattccaacatc
ataactcctcgccaagtgatcggcggcttcagaggaggaagcctgtcctccagaaacatc
ctccgactcaatgctcggaacgccgcacaggctcacaggctgggggggccggaccccaac
gagcccgacggtgccgggcgccgcaagctcgaatgcatggccgccgtgcatcggcgggag
ggcacggaggaggcaaaggtcacggatcggactaaggaagcccggtcggccagagaactt
catcacgtccaacccaacgaaattcacaaccaggccgagggcatcgccaacatgctgagc
caggccatcaccacccggcacctgctctacgccaacctgggcaccgccgagtacatggag
ttcgtccttaaaaaccccttcaacgtccctcagacggtcaccgtgcacagcgacgacccc
gagctcagtgccatcacgaacacagaggagtgggcttacttcaaggcgctctgcagaacc
acaaccccgctggaggagaacatgttccacctggaggaaggtgccccgggtcctcgggtc
tacctccggcccaaggagagcatccacatccccctgaagtaccagagtttcctctgcgac
cacaccatggccctgcagggaccgagctttcaaccgccgggcaaaggatcccaagcggcc
aaaaggaatctgtccaacattgttgcagccaagaccataaaggtcacgttcgcggcagaa
gacggcaagccgatggccatctgccaggtggacgtggagccgacgcctcacgtggtcgac
cagacgttccggctctaccaccccgagctctgcttcctcaagaaagccatccgcctgcca
ccctggaacgaccccacagttggagacccagatgtcaggactcacatttccgtacgctgc
agtgacccgaacatcatctgccagacaaggatgcttgcgccgggggagcctcgggacgtg
tacttgaaagtgccggggagtcccagtccaaacataaaaatgttctttgtgatggttttc
actgatcagtggatggcggtgccctcccagatctggcagatttacgtgcacttcctggag
cgggtggacgtcagctgcgtgaccggccagcggagctgccaatcgctggtgctgaggggg
aagcaggcggtccgcaaggtcaaatgtttctcatcgcacccccaggagatcgaggtggac
ccagagggcgtgttcgtcctgcctccggcggcggtgcaggagctccagctgaaggtgcag
ccgtggcgagcgggaagccgcttcttgtacgtgaacgcggtggacgtggagaaccggcgg
ctggtcaccgcctggctgctctgtctcaacgtccaccggcccgtgctgtccaaggcgttt
gaagtgtgtgtccccgtcggtggcggccgtggaagctccaggaaaatcacctacaccaac
ccgtacaccggcggccgctccttcctgctccgctcggaccatccggacctgctccagttc
aaagaggagaaattccagatcggcgcgggagagagctacaccatcggactgcgattcgcc
cccagccagggtcccggctcgctggagatactggtctacgtcaacaacctggaggagaag
acggaggagaccttctgcgtgaaggtcaactactcctga
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