Pseudoliparis swirei (Mariana hadal snailfish): 130200474
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Entry
130200474 CDS
T09868
Symbol
lamb1b
Name
(RefSeq) laminin subunit beta-1b isoform X1
KO
K05636
laminin, beta 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04510
Focal adhesion
pswi04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130200474 (lamb1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130200474 (lamb1b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
130200474
NCBI-ProteinID:
XP_056280788
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All DBs
Position
10:3410096..3438875
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AA seq
1804 aa
AA seq
DB search
MRDAPTSSQDALDVPRADMSLIILLISTLALRWPVGAQQQQQLPDYADVCTEGSCYPATG
DLLIGRAHKLFVSSTCGLQHPERFCIVGHLEEEKKCFVCDSRQMFDDDSNQVSHTIANLV
TTFAHNRLKTWWQSENGVENVTIQIDLEAEFHFTHLIMTFKTFRPAAMVIERSMDFGKTW
QVYRYFAYDCESSFPGVSSGPKGKVDEIICDSRYSDIEPSTEGEVIFRVLDPVFEIEDPY
SLEIQNMLKITNLRVKFLRLHTLGDNLLDSREEVTEKYYFALYDMVVRGNCFCYGHASEC
APIDGAPTGAEGMVHGRCVCNHNTEGLNCEHCQDFYHDLPWRPAEGRSSHACKRCECNQH
SSSCHFDLAMYVTTGNVSGGVCDDCRHDTAGRRCEQCAPFYHQHPDRDLRDPNVCEPCNC
DPAGSLQGGLCDSHTNMAAGLISGQCRCKANVEGERCDRCRRGHHGLGQGPHGCLPCACN
QLGTLSGGSSCDADTGSCFCKRLVNGRDCDECLPQHWGLSNDMDGCRSCDCDQGGAVNND
CEPHSGQCVCREHMFGRRCDQVESGFYFITLDHYTYEAEDAKHGPGVTVVPRPYPLDRSP
TWTGVGFVNVPEGAYLEFSIDNVPESMDYDILIRYEPQLPEQWEQVNVRVERPVLDPPSS
SGHCDHPVQSGDDQSISLPPGSRHVLLVRSVCFQRGLNYTLHLTLPLYSSVSDIQSPYTL
IDSVVLIPRVREMDMFHGVAGEGAWDTFQRYRCLESSQSVVKSPLTDICNDYIFSVSALL
HQGAMACQCDPQGALSAVCEPSGGQCRCRPSVVGRNCDRCAPATFLFSPAGCRPCGCDPL
GSVSAFCHEATGQCECVPGATGRQCAHCLPGFWGFPQCRPCQCNGHSESCHPQTGECRGC
RDFTGGHHCDRCLGGYHGDPELGSGGHCRPCMCPDGPSSGRQFSDSCYLLTATNQLVCVC
SPGYKGARCDECAPGYFGNPQVPGGRCLPCQCNGNIDMQDPGSCDAQTGACLKCLYHAEG
DGCQTCRPGYYGDAATQSCRKCMCHSAGTSPRACPSPDECECDQRSGQCPCRPNVVGQNC
AACAADTWNLAAGAASGCQRCDCDPVHSSGSSCSEVTGQCLCRPGFGGKTCRECRELFWG
DPEVKCHACDCDSRGVSGAQCHRATGQCSCVEGVSGPRCDACARGYQGEFPSCEPCHRCF
GVWDAVVGELTNQTRRLEAQVTQLQTSGVTAPYRELVGSLETNVKAVREIVESNAAAVKL
EEIQELMHQIIGVMSYLNGKLNTTEETAIHLHGDANATDADLAALTDEAGRLELRVRELR
RQVDNFKNANIQGAMDTIAAAHVASAAAALGANASTSDPGNTLEASAAVRSAAEDKLSAA
QTEFDRKHERNAKKLDALSAELDALDPAPLSEQTCGGAAEGAGCSASPCGGLGCGGEDGA
ARCGGDGCGGVATASRSALESAGDLDREILAASQEVDKLSRLVWEANNRASQAQVNALEV
LVKSNRSKERVEQSNQQLRQLIKEIRDLLTDDKVEVSVIEAVANEVLALEMPTSTEKLQE
LTTEIREKVGALTSVETILSQSAEDIRAAETLLRHAKAASEEAATVKEAADVVKTALEET
ERAQSVAMDAILLAQNNTRGTLDLLLSVESETAVSELKLGNTTGRLVQLEREVGLLRQNS
LEVNRLAEAADWATDQARLNAEEAQQEFDMEVKDRLVDVEDLVEDKGEAVQQARRRADEL
QQEARELLAQSGRKLQRLGELEGSYEANQLVLEAKAAELAELERAVRRVLDEISSKVTLY
STCL
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atgagggacgcaccgacatcctcccaggacgcgctggatgtcccgcgcgccgacatgtcg
ctcataatcctgctcatctcaactttagccctgcggtggcccgtcggggcccagcagcag
cagcagctgccggactacgcggacgtgtgcacggagggcagctgctacccggccacaggt
gacctgctgatcggccgcgcgcacaagctcttcgtgtcctccacgtgcggcctgcagcac
ccggagcgcttctgcatcgtcgggcacctggaggaggagaagaaatgtttcgtgtgcgac
tcgaggcagatgttcgacgacgacagcaaccaggtcagccacaccatcgccaacctggtc
accaccttcgcccacaaccgcctcaagacctggtggcagtcggagaacggtgtcgagaat
gtgaccatccagattgacctggaggccgagttccacttcacacaccttatcatgacattc
aagacgtttcgtccggccgccatggtgatcgagcgctccatggacttcgggaagacgtgg
caggtttatcggtacttcgcctacgactgcgagtcgtccttccccggcgtgtcgtcgggg
ccgaagggcaaagtggacgagatcatctgcgactcccgctactcggacatcgagccgtcc
acagagggagaggtgatatttcgggtgctggaccccgtctttgagattgaggacccctac
agcctggagatacagaacatgctgaagatcaccaacctgcgagtgaagttcctgagactt
cacacgttgggcgacaacctgctggactctcgcgaggaggtgacggagaagtactacttc
gccctctacgacatggtcgtccgcggcaactgcttctgctacggccacgcctccgagtgc
gccccgatcgacggagcgccgaccggagccgagggcatggtccacggccgctgtgtgtgt
aaccacaacaccgagggactgaactgtgagcactgccaggacttctaccacgacctgccg
tggcgacccgccgagggccggagcagccacgcctgcaagaggtgcgagtgcaaccagcac
tcctcgtcgtgccacttcgacctcgccatgtacgtgacgacgggcaacgtcagcggcggc
gtgtgcgacgactgccgccacgacacggcgggccggcggtgcgagcagtgcgcccccttc
taccaccagcaccccgaccgcgacctcagggaccccaacgtctgcgagccgtgtaactgc
gacccggccggctctctgcagggcggcctgtgcgactcgcacaccaacatggccgccggg
ctgatctcaggtcagtgccgctgcaaagccaacgtggagggggagcgctgcgaccgctgc
agacggggccaccacggcctgggccaggggccgcacggctgcctgccgtgtgcgtgtaac
cagctcggcacgctgtcaggaggaagctcctgcgacgcggacacaggaagctgcttctgc
aaacgactcgtcaacggacgagactgtgacgagtgtctgccgcagcattggggtctgtcc
aatgacatggacggctgcaggtcatgtgactgcgatcagggcggagccgtcaacaacgac
tgcgagcctcactcggggcagtgcgtgtgcagagagcacatgttcggccggcgctgcgac
caggtggagtccggcttctacttcatcactctggaccactacacctacgaggcggaggac
gccaagcacggccccggcgtgaccgtggtgccgaggccgtaccctctggatcgcagtccc
acgtggaccggcgtgggcttcgtgaacgtcccggaaggagcctacttagagttctccatc
gacaacgtgcccgagtccatggactacgacatcctgatccgctacgagccgcagctgccg
gagcagtgggagcaggtgaacgtccgagtggagcgtcccgtcctcgaccctccgagctcc
tccggccactgtgaccaccccgtgcagagcggagacgaccagtccatctccctcccacct
ggatccagacatgtgctgctggtgaggtcggtgtgtttccagcgaggactgaactacacg
ctgcacctcacgctgccgctctactcgtcagtcagtgacatccagagcccgtacacgctc
atcgactccgtggttctgatcccccgggtcagggagatggacatgttccacggcgtagcc
ggtgagggggcgtgggacacgttccagaggtaccgatgtctggagagcagccagagcgtc
gtgaagagcccgctgacggacatctgcaacgactacatcttcagcgtctccgccctgctg
caccaaggagccatggcatgccagtgtgaccctcagggggccctcagcgccgtgtgtgag
cccagcgggggtcagtgccgctgtcggcccagcgtcgtcggcaggaactgtgaccgctgc
gcccccgccacgttcctcttcagccccgccggctgcagaccttgcggctgcgaccctctg
ggctccgtcagcgccttctgccacgaggcgacgggccagtgcgagtgcgtgccgggggcc
accgggcgccagtgcgcccactgcctgccgggcttctggggcttcccccagtgccggccg
tgccagtgcaacggccacagcgagtcgtgccacccgcagaccggagagtgccgcggctgc
agggacttcaccggcggacaccactgtgaccggtgtctgggcggttaccatggcgacccg
gagctgggttcaggtgggcactgccggccctgcatgtgccccgacgggccgagcagcgga
cgccagttttcagacagctgttacctcctgactgctactaaccagctggtgtgtgtgtgc
agccctggttacaaaggtgccaggtgtgacgagtgcgcccccgggtacttcgggaacccc
caggtgcccggtgggcgctgcctgccctgccagtgcaacggcaacatcgacatgcaggac
ccggggtcctgtgacgcccagacgggcgcctgcctcaaatgcctgtaccacgccgagggc
gacggctgccagacctgcaggccgggttactacggcgacgccgccacccagagctgcagg
aagtgcatgtgtcactcggcgggcacgtctcctcgggcctgcccctcccccgacgagtgc
gagtgcgaccagcgcagcggccagtgcccctgccggcccaacgtggtcgggcagaactgc
gccgcctgcgccgccgacacctggaacctcgccgccggcgccgcgtcgggctgccagcgc
tgcgactgcgacccggtccactcctccggctcctcctgctccgaggtcacaggacagtgc
ttgtgcagacccggtttcggtggcaagacgtgtcgggaatgccgagaactcttctggggt
gacccggaggtcaaatgtcacgcttgtgactgcgactctcggggcgtctccggcgctcag
tgccaccgcgccacgggccagtgctcctgcgtggagggcgtgtccgggccgcggtgcgac
gcctgcgccaggggctaccagggggagttcccctcctgcgagccctgccaccgctgcttc
ggggtctgggacgccgtcgtcggcgagctgaccaatcagacgcggcgcctggaggcccag
gtgacgcagctgcagaccagcggcgtgacggcgccgtacagagagctggtcggcagcctg
gagaccaacgtcaaggccgtccgggaaatcgtggagagcaacgccgccgccgtgaagctg
gaggagatccaggagctcatgcatcagatcatcggcgtgatgtcgtacctcaacgggaag
ctgaacacgacggaggagacggcgatccatctccacggcgacgccaacgccaccgacgcc
gacctggccgcgctgaccgacgaggccggccggctggagctgagggtccgggagctgagg
cggcaggtggacaacttcaagaacgccaacatccagggtgccatggacaccattgccgcc
gcacacgtggcgtctgcggcggccgcgctcggcgccaacgcctccaccagcgacccgggg
aacacgctggaggcctcggccgcggtccggagcgccgcggaggacaaactgagcgccgcg
cagacggagttcgaccgcaagcacgagagaaacgccaagaagctggacgcgctgtccgcc
gagctggacgcgctggacccggcgccgctcagcgagcagacgtgcggcggtgcggccgag
ggcgccggctgctccgcctccccctgcggcggcttgggctgcggcggcgaggacggagcg
gcccggtgcggcggagacggatgcggaggcgtggccacggcgtcccggagcgctctggag
tccgccggagacctggaccgggagatcctcgccgccagccaggaagtggacaagctctcc
aggctggtgtgggaagccaacaaccgagccagccaggcccaggtgaacgctctggaggtt
ctggtgaagtccaaccggagcaaagagagggtggagcagagcaaccagcagctccgtcag
ctcatcaaggagatcagagacctgctgaccgacgacaaggtggaggtgtcggtgatcgag
gcggtggccaatgaggtgctggcgctggagatgccgacgtccaccgagaagctgcaggag
ctgacgacggagatccgggagaaggtcggcgctctgaccagcgtggagacgatcctcagc
cagagcgccgaggacatccgtgccgccgagacgctgctgcggcacgccaaggccgccagt
gaggaggcggcgaccgtgaaggaggcggcggacgtggtgaagacggccctggaggagact
gagcgcgctcagagcgtcgccatggacgccatcctgctggcccagaacaacacgagggga
accctggacctgctgctctctgtggagtcggagacggccgtgtcggagctgaagctcggc
aacaccacgggccgcctggtccagctggagcgggaggtcggcctgctgaggcagaacagc
ctggaggtcaaccgcctggcggaggcggccgactgggccaccgaccaggcccggctgaac
gcggaggaggcccagcaggagtttgacatggaggtgaaggacaggttggtggatgtggag
gacctggtggaggacaaaggggaggcggtgcagcaggcgaggaggagggcggacgagctg
cagcaggaggccagagagctgctggcccagagcggcaggaagctgcagagactcggggag
ctggaaggttcctacgaggccaaccagctcgtcctggaggccaaagccgcggagctggcg
gagttggagcgcgccgtgcgccgggtcctcgacgagatcagctccaaagtgacgctgtac
agcacctgtctgtga
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