Pseudoliparis swirei (Mariana hadal snailfish): 130200612
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Entry
130200612 CDS
T09868
Symbol
utp20
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pswi03009
]
130200612 (utp20)
Ribosome biogenesis [BR:
pswi03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
130200612 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
CCD97-like_C
Motif
Other DBs
NCBI-GeneID:
130200612
NCBI-ProteinID:
XP_056281017
LinkDB
All DBs
Position
10:9601910..9625332
Genome browser
AA seq
2838 aa
AA seq
DB search
MKIKSKSSYHKSENTYRFLTFAERLANVNIDVIHRIDRTGAYAEEVETYFSEGLTKWKDL
DLTEHFTTFLKEVSNRSQSFNMLVFHQESIVASLKTHLAVKNSLAYQALLDLVVQLARDL
QTDFYPHFPDFFILITSLLDTKDTGVLEWAFTCLSFLYKYMWRVMVKDMTNIYSLNSTLF
EHKKEHIRNFAAESFSFLMRKVPDLDALLSHVFSDLQQHPDKAEGTGQLLFEMCKGVRKM
FHSCATKAFPVALRKLGPSTNTGVSLPWDTVKKALDHMAQAAANHVDREHFLVLWESLQV
SVVEVLAVVEDKGEEAELATEQLERLLVILHTLVSHKNGAKITKPEAVCQTVLRLIQSSS
LSASCSRLLLQITSSLLLGENVALPKALTQEMVQKVFGSTVGQDLILEFTKEMFTMKQFE
QLFLPSLLRFTAGLFESGDPVSRHCGLDELVSLILAKAPPPTDGSMAFETYPLLFTGQTT
GVFPTKDDGPASNSTSEQPAVPDMVLSLIHFPGEQNQSITDLSLPWAALVLLPHLRPIVP
ASVVPAVTAFLNHILCEIEAEKLGKAGLFVAAQAMSCLLTLDGSAQLLSLVTVDKINSIL
QKFPTDLSALLLGDLYYTRLSLSGVSEHLSHNALLELHQMLHANLSSNIPKIRLLTLRIL
SHFEAELQPQAEGEESMEVQPVFALCLQAELVPASVQDYRDKLLHLRKLRYDLVQRSLPQ
GPPGTFQQVPLRYLIAMLFVNFKPLWEAVLELLVTHARGMDNKDFWRVYHEHLEMVAGIA
EKELQESDEDYDDDEEEGGLEGEPGCDVIESGDMGVLFLERLKLTSVPNDRTDFPNFRSL
LWRCMTQFPDRVEPRSRELSPLLLRFIQNEFYRTDMLVAPTQDLRKGNDADLEESGVAME
EDEERGDDEQEAEEGGRQQKKAPPKRATAKHLICHLKVFAKFTNPRYLYMERSLSELYNQ
LLCHQDQQIQRVALECVLTYKDSNIVPYKENLERLLDDKHFKEEIVHFNISEETGVIDAS
HRVKLIPLLMRILFGRLRSKAGSKFQGKASAATRSSIILRFLAGCQPEELGIFIDLLLEP
IRKHSEGSCLAAVEKAVAETDVGAVLPLGRQHSLLNIINVVIQKLGHLIHIYLPKVLQIL
LCVTASVSVVLEKRDQLRPGCIGPLKNLRRLGILRIQDFFDGFDSYSFSADELDAVFQAV
VWPQLCRLPTESPYSPTPLLKLIHVWCKNARYFPLLAKQRPNQPECDVLLNVFAILSAKK
ASPVTIGVVMDIAEFLATAEDFVPSEAETELSITGCLFPQPKEGSLVTADSLHQGSSVLL
PHISTLLQYLSGVVRNTDRLKKKKFRVQVAKELNILSKVSRFVSDKEQSSVLITLLLPYL
QKGFNPQETEIDILATVQNLLRQSVQPSVFLRPLGKLFAIIHHKLPRQALTNVFQTLSDL
EPSLSYITDLASKLNAFDSRHLDEVHFDVRLVAFQDASMRVKGMTTLDMDYIYVIMHNCF
HTFEMGDMSLGDNATLCLSAVITQLAAVGAGEQLYKDVVQHTILTAVHKGLRSTTDTVQH
EYTTVLACLVKTFPSRKEFRDLVQLTDYNDAESDFFEHMKHIQIHRRGRALRKLAKQLTE
GQVAMTPRSLQNYIMPYAMTALLDEKMLKHESMISASVEIVGAVCRKLTWSKYLYYLKHF
VHVLQTGQAEQKLAISLLITVLEAFHFDHQTLSREMEAAKARETGRVEVDAEDEDQAAAG
ESDASDDEEAMEVDGKTAPTDVPMETDTASREEHVASKEGATSEAKTPTGPKPFVVASGL
PQSTGELESLIRAIHQTVTNSVLPRLHKCLTAKIKRDDEHKSVKSKDVKEEEVARIPIGF
AMVKMMQTLPPDIMEVHLPGILMKVCVVLRSRFQEVRDVARGTLVKIIETLGYRYLQYLL
KEMQGVLVKGYQVHVLTFTVHQLLLVLTPTLKSGDLDPCMNMLIEIFNNELFGPVAEEKE
VKGIVSKLMEARHSKSMDSYELLARFCSKDSVTKFLLPLKELLENSFSLKVCNRVGAVLR
RLVLGLLVNDGMTAQDILLLCHSLVSQSLPLLTKRDREKASAKPPPDPRLPPPSCLLLLP
TPKRGGQKAPVSSRSNMYILVDAGLKLLHLSLKKSKVTSSDTSALEMLDPFVPLLIDCLN
SMHVKVITEALVAFTWLFKFPLPAVQQNANQLTMQLFILLKDYSKAGAARGENFSLVQNC
FKAITMLVKNVKHNQISETQLQVLLGYAEEDIYDQSRQATAFGLLKAILSRKLIVPEMEE
VMKKVATLSVNGSNNMIRIHCRQIYLKYLLDYPLGKKLRGHMNFVVAQLHYEHDTGRESV
LEMMAYIFQTFPQNLLMKYSGLFFAPLALVVVNDDSARCKKMATMAIKALLAKLDLNQQN
NLFTLVNTWLNAEKASLRRLGAQLCGLYVELEGDKFARRMNDLLPLVEKEINPEKYEDIE
EEEDERGADRLLFSFLTLLTKLSKHCGLLERRKPHDTLCSIWAHIEAHLRYPHCWVWLTA
SQLFGQLFAAYPAEQLVAVWRGEGDASPKSPATSFLTSRMDKKMRELALSFCHQLQSRFL
DVASGEQVIKNLLFVGKVIYLLSPESDATPPQEESKNEEKEKKEEEEEEKEEEEQQNADE
EREEKEVEGKDEDEKEEEEEDEGDHDDRPPSLLWLIKKLSLMAKREAAFTPKVPLRRTCV
FKFLGAIAMDLGKERLGPYLTTLITPLYRELDSTYADQDPTLKNLAQELIELLKKHVGLE
KFSLAFSAVQKEFSQKRAARKRHRAMQAVANPEIAAKKKLKKHKNKIEAKKRKIEFLRPG
YKAKRHRSNVLKDLAMVQ
NT seq
8517 nt
NT seq
+upstream
nt +downstream
nt
atgaagattaaatccaagtcttcgtatcacaaatctgagaacacctaccggtttctcact
tttgctgaaagacttgccaatgtcaacattgatgtcatccatcgtattgaccggactgga
gcttatgcagaggaagtagaaacctacttctctgaaggactgacaaaatggaaagacctg
gacttgaccgagcatttcactacctttttgaaagaggtttccaaccggagtcagtcgttc
aacatgctggtgttccaccaggagtcgatagtggcgagtctgaaaacgcacctggccgtc
aagaacagtttggcctaccaagcattgttggacctggtggtgcagctggccagagacctg
cagactgacttctacccccacttccccgacttcttcattctgatcacctcactgctggac
accaaggacacgggggtcctggagtgggctttcacctgtctctccttcctctacaagtac
atgtggcgggtcatggtgaaggacatgaccaacatctacagtttaaacagcacgttgttc
gagcacaagaaagagcacatccgcaactttgcagcagagagcttctcttttttgatgaga
aaggttccagatctcgatgccctgctgagccacgtgttctcagacctgcagcagcacccc
gacaaggcggagggaacaggccagctgctgtttgaaatgtgcaagggagtccgaaaaatg
ttccactcctgcgctacaaaagctttccccgtagctttgcgtaagctcggaccctcgacc
aacacgggagtgtctctgccgtgggacaccgttaagaaggctctggatcacatggcccag
gctgctgccaatcacgttgaccgagaacacttcctggttctgtgggagtccttacaggtc
agtgtggtggaggtcttagctgttgtggaggacaaaggagaagaggcggagctggcaacc
gagcagctggagaggctgcttgtcatcctccacaccctggtgtcccacaagaacggagcc
aagatcaccaagccggaagctgtctgccagacggtgttgaggctgattcagagctcgtct
ctgtcggcttcttgttcccgtctactcctccagatcacctcctccctgctcctcggggag
aacgtcgccctgccaaaagcactcacccaggagatggttcaaaaggtgttcggcagcaca
gtgggacaagatctcatactggagttcaccaaggagatgttcaccatgaagcaatttgaa
cagctcttcctcccgagcctgttgcgtttcacagccggcttgtttgagagcggcgatcct
gtttctcgccactgtggcctggacgagctggtcagtctgatcctggccaaagctccgccc
cccacagacggctccatggcctttgaaacctacccactgctgttcactggccagactaca
ggagtgttccccactaaagacgacggtccggccagcaactcaacgtcagagcagccggcg
gttcctgacatggtgctgtcgctgattcacttccccggggagcagaaccagtccatcacc
gacctgtcgctgccttgggctgccctggtgctcctgccgcacctcaggcccatcgttcca
gcgagtgttgttccagctgtgaccgctttcttaaaccacatcctgtgtgagattgaggca
gagaaactgggaaaagctggtctgtttgtggcggctcaggccatgagctgcctcctcacc
ctggatggctcggcccagctcctctcactggtcacggtggacaagatcaactcaatccta
cagaagttccccacggacctgtctgccctgttgctcggagacctgtactacactcgcctg
tcgctcagcggcgtttcagagcacctgtcccacaatgcactgctggagctccaccagatg
ctgcacgccaacctctcctccaacatccccaagattcgcctgctgactctgcggattctc
tctcactttgaggcggagctccagccgcaggccgagggcgaggagagcatggaggtgcag
ccggtgttcgcgctgtgcctgcaggcggagctggtgccggcctcggtgcaggactaccgg
gacaagctgcttcacctccggaagctgcggtacgacctggtgcagcgcagcctgcctcag
gggccccccggcaccttccagcaggttcctctgcgatacctcatcgcaatgctgttcgtc
aacttcaagcccctgtgggaggcggtccttgagctcctcgtgacccatgccagggggatg
gacaacaaggacttctggagggtctaccatgaacatctggaaatggtggcagggatagct
gaaaaagaattacaggagagcgacgaggactatgatgacgacgaagaggagggcggtctc
gagggcgagccgggctgcgatgtcattgagagcggggacatgggggtgctgttcctggag
aggctgaagttgacctccgtccccaacgacaggacggacttccccaacttccgcagcctg
ctgtggcgttgcatgacccagtttcccgaccgagtggaaccgcgcagccgggaactgagc
ccgctgctgctgaggttcatccagaatgagttttaccgcaccgacatgctggtggccccc
acccaggacttgaggaaggggaatgacgccgacctcgaggagtctggggtggcgatggag
gaagacgaggagaggggggatgacgagcaggaggccgaggagggaggcagacagcagaag
aaggctcctcccaagagagccactgcgaaacatctgatctgccatctgaaggtgttcgcc
aaattcaccaaccctcgctatctgtacatggagagaagcctcagtgagctgtataaccag
ttgctctgccatcaggaccagcagatccagcgagtggctctggaatgcgtcctcacatac
aaagactccaacatcgtaccgtacaaggagaatctcgagaggctactcgatgacaaacac
ttcaaagaggagattgtccatttcaacatttctgaggagacaggagtgattgatgcgtca
cacagagtcaaactcatccctttgctcatgaggatcctgttcggccgtctgcggagtaaa
gcaggcagtaagtttcaagggaaggcgagcgccgccacccggtcctccattatcctgcgc
tttctggcaggatgccaacccgaggagctgggaatattcatcgacctgctgctggagccc
atccgcaaacacagtgaaggttcgtgcctggcagcggtggagaaagccgtggcggagaca
gacgtgggggccgtcctgccgctgggccggcagcacagcctgctgaacatcatcaatgtg
gtgatccagaaactgggccacctcatccacatctacctgcccaaggtgctgcagatcctg
ctgtgcgtcaccgcctccgtgtccgtcgtcctggagaagagggaccagctgcgtccaggt
tgcatcggtcctctgaagaacctgaggcgactcggcatcctgaggatccaagactttttt
gacggcttcgactcctacagcttcagtgcggacgagctggatgccgtctttcaggccgtg
gtctggcctcagttgtgtcgtctcccgacagagagcccttactccccgacccctctgctg
aaactaatccacgtttggtgcaaaaatgcaaggtacttccccctcttggccaagcagaga
ccgaaccagccggagtgcgatgtcctcctgaacgtcttcgccatcctctcagccaagaaa
gcttccccggtgaccatcggagtggtaatggacatcgctgagttcctcgcgaccgctgaa
gacttcgtaccctcggaggctgagacggagctgagcatcaccggctgtctgttcccgcag
cctaaagagggctcgcttgtcactgccgactcgctacaccagggctccagtgtgctgctg
cctcacatatccaccttgctgcagtacctcagcggagtcgtgcgcaacacagaccgactc
aagaagaagaagttcagagttcaggtggcaaaagagctcaacatcctctccaaggtcagt
cggtttgtgagcgacaaggagcagagctcggtactcatcaccttgctgctgccctacctc
cagaaaggcttcaaccctcaagagacagaaatcgacatcctggccacggtgcagaacctg
ctgcgacagtccgtgcagccatccgtcttcctgcggccgctcggcaaactctttgccatc
attcaccacaagctgcccaggcaggccctcaccaacgtcttccagactctgtcagatctg
gagccttccctttcctacatcactgatttagcctcaaagctcaacgcgttcgacagtcgc
cacttggacgaggtccactttgacgtgcgcctggtggctttccaagacgcctccatgcgg
gtcaagggcatgacgaccctggacatggactacatctacgtcatcatgcacaactgcttt
cacacctttgagatgggagacatgtcgctgggagacaacgccaccttgtgtctgtcggcc
gtgatcacccagctggcggcggtcggtgctggagagcagctctacaaggacgttgtgcaa
cacaccatcctgaccgccgtgcacaagggactgcgcagcacgaccgatactgtgcagcat
gaatacaccacagtgctggcctgcttggtgaagacctttccctccaggaaagagttccga
gacctggtacagctcaccgactacaacgacgccgagtctgacttctttgagcacatgaag
cacatccagatccaccgtcgtgggcgtgccctgaggaagctggccaagcagctgaccgag
ggccaggtggcgatgacgcctcgttcactgcagaattacataatgccgtacgccatgacc
gccctgctggacgagaagatgctgaagcatgagagcatgatatcggcgtcggtggagatt
gtgggcgctgtgtgccgcaagctgacctggtccaagtacctctactacctcaaacacttt
gtccacgtcctgcagacggggcaggccgagcagaaactggctattagtttgctgatcaca
gtcctggaggctttccattttgaccatcaaaccctcagcagagaaatggaagcagccaag
gccagagagactgggagagttgaagtcgacgccgaggatgaggaccaagctgcagccggc
gaatcggacgccagcgacgacgaggaagcaatggaggtagacggtaagaccgctccgacc
gacgttcccatggaaacggacaccgccagcagagaagagcacgtcgcctcgaaagaagga
gccacctccgaagccaagacgccgacgggtccaaagcccttcgtggtagccagcgggctg
ccgcagagcacgggggagctggagtctctgatccgcgccatccaccagaccgtcaccaac
agcgtgctgcctcgcctgcacaagtgtctcactgcaaagataaagcgtgacgatgagcac
aagtcggtgaagtcgaaggatgtgaaggaggaggaggtggcgaggataccgatcggcttc
gccatggtcaaaatgatgcagactctgcctcctgacatcatggaggtccacttgcctggg
atcctgatgaaggtgtgtgtggtgctgaggagccgcttccaggaggttcgcgacgtggcg
aggggaactctggtgaagatcatcgagactctcggctacaggtacctgcagtacctgctc
aaagagatgcagggggtcctggtcaagggctaccaggtccacgtgctaacattcacagta
caccagctgctcttggtcctcactccaaccctgaagagtggtgacctggacccatgcatg
aacatgctgatcgaaatcttcaacaacgagctgtttgggcctgtggccgaggagaaggag
gtgaaggggatcgtctccaagctgatggaggctcggcacagcaagagcatggactcctac
gagctgctggcccgcttttgcagcaaggacagcgtaaccaagttcctattgccactgaag
gagctcctggagaactcctttagtctgaaggtgtgtaacagggtgggggctgtgctgagg
cggctggtcctgggtctgctcgtcaatgacggcatgactgctcaagacatcttgctgctg
tgccacagcctggtcagccaaagtctgccgctgcttacaaagagagaccgagagaaagcc
tcagctaagcctcccccagaccccagactgccccctcccagctgcctgctcctgcttccg
actccaaagagaggcggtcagaaagcgccggtcagcagccgatccaacatgtacatcctc
gtggacgccggcctcaagctgctccacctgagtctaaagaaatccaaagtgacgtcgtcc
gacacctcggctctggagatgctggatcctttcgtgccgctgctcatcgactgcctcaac
tccatgcacgtcaaggtgatcactgaggccctggtggcattcacttggctgtttaagttc
cctctgcccgcagtgcaacagaatgccaaccagctgaccatgcagctctttatcctgcta
aaagattactctaaggccggagccgcccgcggggagaacttcagcctcgtccagaactgc
ttcaaggccatcaccatgctggtgaagaacgtcaaacacaaccagatttcagagacacaa
ctacaagtgctgctgggatatgccgaggaagacatctacgaccagtctcgccaggccacg
gccttcggcctgctgaaggcaattctgtccaggaagctcatcgttccagagatggaggag
gttatgaagaaagttgccacgctttccgtaaacggcagcaacaacatgatcagaatccac
tgccgacagatctatctgaaatacctgctggactaccccctggggaagaagctgagaggc
cacatgaacttcgtggtggcccagctgcactacgagcacgacacaggccgggagtctgtg
ctggagatgatggcctacatcttccagacgttcccccagaacctgctgatgaagtacagc
ggcttgttcttcgccccgctggccctggtcgtggtcaacgatgactctgctcgctgtaag
aaaatggccaccatggccatcaaggccctgctggccaagctggacttgaaccagcagaac
aacctgttcaccctcgtcaacacctggctgaatgcagagaaggccagcctgcggcgtctc
ggggctcagctgtgtggcctgtacgtggagctggagggggacaagtttgcccgtcgcatg
aacgacctgctgccgctggtggagaaagagataaaccctgagaaatacgaagacatcgag
gaggaggaggacgagagaggagcagaccggctgctgttcagttttctgactctcctcacc
aaactgagtaaacactgtggcctgctggagcgccgcaagcctcacgacaccctgtgtagt
atctgggctcacattgaagcccacctgcggtaccctcactgctgggtgtggctgacggcc
tcgcagctgtttggtcagctgttcgcagcctatccggcagagcagctggtggccgtatgg
agaggagagggagatgcttcacctaagtctccagccacatcctttctcaccagccgcatg
gacaagaagatgagagagttggcgttatctttctgccatcaactccagtccaggttccta
gacgtagcgtcaggagagcaggtgatcaagaacctgctgttcgtggggaaagtgatctac
ctcctttctcccgagtctgatgccaccccccctcaggaagaatcgaaaaatgaggagaag
gagaagaaggaggaagaagaagaagaaaaagaggaggaggagcagcagaatgcagatgaa
gagagggaagagaaagaagtagaggggaaagatgaagatgaaaaggaggaggaggaggaa
gatgaaggtgaccatgatgatcggcctccttccctgctgtggttgataaagaaactgtcg
ctgatggccaagcgagaggcagcgttcactcccaaagttcccctgaggagaacgtgtgtg
ttcaagttcctgggcgcgatagccatggacctggggaaggagcgactgggtccctatctg
accacgctcatcacgcctctctacagggagctggacagcacctatgcagaccaagatccc
accctgaagaacttggcacaggagctgatcgagctgctgaagaaacacgtggggctggag
aagttctctctggccttctctgcggtccagaaggagttttcacagaagagagctgcacgc
aaacgacacagagccatgcaggcggtggcaaacccagaaatcgcagccaagaagaaactc
aagaagcacaagaacaaaatagaagccaagaagaggaagatcgagttcctccggcccgga
tataaagccaagaggcaccggagcaacgtgctcaaagacctggccatggtgcagtga
DBGET
integrated database retrieval system
